>input_sequence_79645
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----------------------------------------------ATGGAGCGCAACCCCAGGACACCGGCTCCCCGGG
TGTACACGGAGGTCCCGCCGGAAACAACATTCGTGCGTGCGACCACGTCGACGTTCAAGGAGGTGGTGCAGCGTCTCACC
GGCCAGCCGGCGGCCGCAAATACCGTCGCCCATCGCTATGGTGCCACCGTGCAGCAGCCACCGCCGCCACCGGTGCCACT
CGCGGCAGGCATCGTGTCGCCATATACGCACCCGCTACCACTGTTGTCGGACATGCCGGGCCTGTGCATCGCCAACAAGG
CGGTGAAGGTGAACACACTGTTCCCGATGACATCGGCGTCAATGCTCGCTGAGGACA------TGGAGATGGTGGACGCT
GAAGAGGAGAAGGCCGTCAAGGAGGGTAGGTTCTACCTGCTTCCGTCGGGAAGGTGCCGCTGCTGCCACGGCGAGCCGAA
ACTGCTTCCCTTGTTTCCAGGAGCGGAGTAG-------------------------------------------------
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>chr4B_1_TraesCS4B01G090900
GTGCACTTCTAATTTTTTATTCCCTCCGCCTCATAATATAAGAGCATTTTGGTGTAAAAAATGCTCTTATATTATGGGAC
TGGAGGGAGTATATACTAAAGAGTGCAAGTACCTTAGGTGTATCAAATCCACGTTTGAAAAGAGACAGTAAATACGTGAG
AACAAATTCAAAGCAATAAATTGCTATTCTAGACACCGAATCTTGTGTTTTCCAATGTAGAACATAAACTTTTTTCGATA
AAGGGTGCTTTTATTATCTCAAAATGTAGCATCAAGCAGATACAAAGCATTATGAGTAACATAAACTAGCATATGTTTTA
TCATCAAATACTTTTTTTGTGAGCGGATGCACATGGCATGATACCACATGTATACGAATTTGTTTTTCATTTTACTTTAT
TTTTTCCCAAAATAAAGTGCAAGTAGTTTGGGTGCAATGCATGCAGACGGACGGCATCCGTGAGTCCGCAAGATGAAAAT
TAAGCATAGCACAATTATTAAAGTAGCGAATTTTAGTGTGTTTTCGGCTTCACGGACTTTAGAATGTGTAGCTTTTTCAT
TTATTTAATAAATCAGAGTATTAGCTAGCGGTTCGACTTCAGAATGTGTAGCCTTTTCATTTATCCAGGTCTGATTAG--
AAAAAGTGTTTGTCTTAGTTCTTG---TCTA-TTTTTTGAAAGAAAGCTGCAAGGGGTTAACCAAAACCCTGTGAGTGGA
GCTGTACATGCATGCACTTCCCCAGCGAAGTGAGCTCGTCTTCTTTTGGCTTCTTTCATCTTTCTGTTTCCCCTTTCCTT
TCATTAGCTAGTAACCACGTGATCAACATCTAAATGTTATCACTTTTTGAAAAATCTAAATGCTATCACTAGCGACGTTT
TAGCATACATCTCAATTTTGATTTAGGATTTGATTCGAATTGAACTTATGTTAAACCCTGACAAAGTCTTGTCTGTTGCG
CAGTCTTCCCCCGTGAAGTGCGGGCTTAATTACGTCGTAAGCTGCCATGGAGCGCAACCCCAGGACACCGGCTCCCCGGG
TGTACACGGAGGTCCCGCCGGAAACAACATTCGTGCGTGCGACCACGTCGACGTTCAAGGAGGTGGTGCAGCGTCTCACC
GGCCAGCCGGCGGCCGCAAATACCGTCGCCCATCGCTATGGTGCCACCGTGCAGCAGCCACCGCCGCCACCGGTGCCACT
CGCGGCAGGCATCGTGTCGCCATATACGCACCCGCTACCACTGTTGTCGGACATGCCGGGCCTGTGCATCGCCAACAAGG
CGGTGAAGGTGAACACACTGTTCCCGATGACATCGGCGTCAATGCTCGCTGAGGACA------TGGAGATGGTGGACGCT
GAAGAGGAGAAGGCCGTCAAGGAGGGTAGGTTCTACCTGCTTCCGTCGGGAAGGTGCCGCTGCTGCCACGGCGAGCCGAA
ACTGCTTCCCTTGTTTCCAGGAGCGGAGTAGCCCCTTTCCTACAGTGATGGAAGTTGAGAATTATATGAAGCGCCTATGC
GTCTCGAAGGACTAGCTGAACACATATTGTGCGTGGTGTGATACTTCCAACTATCTCTTACTTGAGCAAATGTGTTGGAT
TTTGCCGTTCTCACTGAACATAGTCATGTATGGAGATAATTAAGAAGGATTTTGCCGTTCTTACTTAAGCGTGGGCTAGA
CAGCATTAAGTCCATACAACCCGATATCGAGCGCAATGTAAGGCGTTGGATCTTGCGCAACGAGTCTCCATTAGGTATTC
TTGATGGGTCTATCTAGAACTCAGTCGACTGAGACTTAACGAAGTCTCAGTCGACTGATGTCATCATAGTTTTTTTGCTG
CAAGCGGCACGGCTAGATGCTACAACTGATGTTGAAAAATGTTGCAGCAGTTTTGCAAGCAATGATGATTGATGCTGCAA
TCAATGTGACTAAAATGCTACAACCGTCAATGACGGATGCTACAATCGGTGAGGCGTTGTGCTACAATCGATGAGGGACA
ACATGCTACAACCAACAAGACGGATGTTGCAACCATAGAAAAAAAGTTGCAAACGTTGGGACAAAATGTTGCATGGTCGA
CTGAGACTTGGTTAAATCTCAGTCGACTGATTTTTAGCAAGCCCGATTCTTGACCACTGAAATCAAGTAAATGCTTCGGT
CTCCTTTGTCATATGATAGGATTACCATAAGAATAGAAAACTTGCAGCAAATGAGATGACATGTATATCAAATCCTATGA
GTAGACATAGAAAGAGAGATGTCATTTGGTTCACATTATAGAATTTTTTATTGAGTCTGGCCTAATGTTTATTTTCCTTT
GAAATGTGGAGGATAAGAACCAATCCTATTAGAAATAGGAATCCATTCTTATGAATCAAAGGGCTCACTAGTAGAAAACA
AGGCTTTCGTTCGGGCCAGGTAAGTCCATTAGTCCCGGTCCAGTCATGAACCGGGACCCATGGGGGCATTG
>chr4D_1
GTGCACTTCTAATTTTTTATTCCCTCCGCCTCATAATATATGAACATTTTGGTGTAAAAAACGCTCTTATATTATGGGGC
-GGAGGGAGTATATACTAAAGAGTACAAGTACCTTAGGTGTATCAAATGCACGTTTGAAAAGAGACACTAAATACGTGAG
AACAAATTCAAAGCAATAAATTGCTATTCTAGACACCGAATCTTGTGTTTTTCAATGTAGAACATAAACTTTTTTCTATA
AAGGGTGC-TTTATTATCTCAAAATGTAGCA---AGCAGATACAAAGCATTATGAGTGACATAAACTAGCATATGTTTTA
TCACCAAATACTCTTTTTGTGAGCATAATGCTT---------------TGTATATGAATTTGTTTTTCATTTTACTTTAT
TTTTCCCCAAAATAAAGTGCAAGTAGTTTGGGTGCAATGCATGCAGACGGACGGCATCCGCGAATCCGCAAGATGAAAAT
TAAGCATAGCACAATTATTAAAGTAGCGAATTTTAGTGTGTTTTTGGCTTCGTGGACTTCAGAATGTGTAGCTTTTCCAT
TTATTTAATAAATCGGAGTATTAGCTAGCGGCTCGACTTCAGAATGTGTAGCCTTTTCATTTATCCAGGTCTGGTTAG-A
AAAAAGTGTTTGTCTTAGTTCTTAGTATCTA-TTTTTTGAAAGAAAGCTGTAAGGGGTTAACTAAAACCCTGTTAGTGGA
GCTGTACATGCATTCACTTCCCCAGCGAAGTGAGCTCGTGTTCTTTTGGCTTATTTCATCTTTCTGTTCCCCCTTTCCTT
TAGTTAGCAAGTAACCACATGATCAACATCTAAATGTTATCACTTTTTGAAAAATCTAAATGCTATCACTGTCGACGTTT
TGGTATACATCTCAATTTTCGTTTAGGATTTGATTGTAATTGAACTTATGTTAAACCCTGACAAAGTCTTGTCTGTTGCG
CAGTCTTCCCCCGTGAAGTGCGGGCTTAATTACGTCGTAAGCTGCAATGGAGCGCAACCCCAGGACACCGGCTCCCCGGG
TGTACACGGAGGTCCCGCCGGCTACAATATTCGTGCGTGCCACCACGTCGACGTTCAAGGAGGTGGTGCAGCGTCTCACC
GGCCAGCCGGCGGCCGGAAATACCGTGGCCCGTCGCTATGGTGCCACCGTGCAGCAGCCACCGCCGCCACCGGTGCCACG
CGCGGCCGGCATCGTGTCGCCATATACGCACCCGCTACCACTGTTGTCGGACATGCCGGGCCTGTGCATCTCCAACAAGG
CGGTGAAGGTGAACACACTGTTCCCGATGACATCGGCGTCAATGCTCGCTGAAGACGTGGAGGTGGAGACGGTGGACGCT
GAAGAGGAGAAGGCCATCAAGGAGGGGAGGTTCTACCTGCTTCCGTCGGGAATGTGCCGCTGCTGCCACGGCGAGCCGAA
ACTGCTTCCATTGTTTCCAGGAGCGGAGTAGCCCCTT-CCTACAGTGATGGAAGTTGAGAATTATATGAAGCGCCTATGC
GTCTGGGAGGACTTGGTGAACACATATTATGCGTGGTGTGATACTTCCAACTATCTCTTACTTAAGCAGATGTGTTGGAT
TTTGTCGTTCTCACTGAACATAGTCATGCATGGAGATAACTA--------------------------------------
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>chr4A_50
-------------------------------------------------TGGTGTCAAAAACGCTCTTATATTATGTGA-
TGGAGGGAGTATATACTAAAGAGTGCAAGTACCTTAGTTGTATCAAATCCACGTCTGAAAAAAGACCGTAAATACGTGAG
AACAAATTCAAAGCAATAAGTAGCTTTTCTAGACACCGATTCTTGTGTTTTTCAGTGAAGAACATG--------------
---------------------------------------------------------------AACTAGCATATGTTTTA
TCACCAAATACTTAC-----------------------------------------------------------------
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-------------------------------TTTAGTGTGTTTTTGGCTTCGCGGACTTCAGAATGTGTAGTTTTTTCAT
TTATTTAATAAATCGGAGTATTAGCTAGCGGCTCGACTTCAGAATGTGTAGCCTTTTCATTTATCCAGGTCTGATTAGAA
AAAATGTGTCTGTCTTAGTTCTTA---TCTATTTTTTTGAAAGAAAGCTGTAAGGGGTTAACTAAAACCCTGTTAGTGGA
GCTGTACATGCATGCACTTCCCCAGCGAAGTGAGCTCGTCTTCTTTTGTCTTCTTTCATCTTTCTGTTTCCCCTTTCCTT
TAATTGGCTAGCAACCACATGATCAACATCTAAATGTTATCACTTTTTGAAAAATCTAAATGCTATCACTGTCGACGTTT
TAGTATACATCTCAATTTTTGTTTAGGATTTGATTCTAATTGAACTTATGTTAGACCCTGACAAAGTCTTGTCTGTTGCG
CAGTCTTCCCCCGTGAAGTGCGGGCTTAATTACGTCGTAAGCTGCCATGGAGCGCAACCCCAGGACGCCGGCTCCCCGGG
TGTATACGGAGGTCCCGCCGGAAACAATATTCGTGCATGCCACCACGTCGACGTTCAAGGAGGTGGTGCAGCGTCTCACC
GGCCAGCCGGCGGCCGCAAATACCGTCGCCCATGGCTATGGTGCCACCGTGCAGCAGCCACCGCCGCCACCGGTGCCACT
CGCGGCCGGCATCGTGTCGCCATATACGCACCCGCTACCACTGCTGTCGGACATGCCGGGCCTGTGCATCGCCAACAAGG
CGGTGAAGGTGAACACACTGTTCCCGATGACATCGGCGTCAATGCTCGCTGAGGACGTGGAGGTGGAGATGGTGGACGCT
GAAGAGGAGAAGGCCATCAAGGAGGGGAGGTTCTACCTGCTTCCGTCGGGAAGGTGCCGCTGCTGCCACGCCGAGCCGAA
ACTGCTTCCATTGTTTCCAGGAGCGGAGTAGCCCCTTTCCT------ATGGAAGTTGAGAATTATATGAAGCGCCTATGC
GTCTGGGAGGACTAGGTGAACACATATTATGCGTGGTGTGATACTTCCAACTATCTCCTACTTCAGCAAATGTGTTGGAT
TTTGCCGTTCTCACTGAACATAGTCATGCATGGAGATAATTA--------------------------------------
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>SNPs
----------------------------------------S--S-----------------S------------------
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---------------------------------------------------S------------------------S---
--------S----------------------SSS-----------------------S----------------------
---S--------------------SS-SSSSSSSSSSSSSSSSSSSSS------S-------------------------
----S-------------------------------------------------------S--S----------------
--------------------------------------------S------S-------S--------------------
--------------S----------------S------------------------------------------------
-----------------------S--------------------------S-----------S----------S------
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-S----------------S---------------------------------------------------SS--------
---S---------------SS---------------S-------------------------------------------
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---------------------------S------------S---------------------------------------
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------S-------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
---------------S----------S-----------------------------------------------------
---------S----------------------------------------------------------------------
----S-S--------S------------S----------------------------------S----------------
----------------------------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_355
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---------------TTTGTGAGCGGATGCACATG---------------------------------------------
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>reverse_1698
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-----------------AACCCGATATCGAGCGCAAT-------------------------------------------
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