>input_sequence_79629
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------------------------------------------------------------------------------AT
GGCGGCGAGCCTGTGGCGAGCGGTGATGGGCACCGGCGCCCCGCCCGCGGACGCCACGGACGGCATCGAGTTCTGGCGCG
AGCCCGAGCGCGGCGGGTGGCTGGACAAGCAGGGCGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAG
GGGAAGCTCTTCTGGTTCAAGGACTCGACCGTCACGCGCGCGTCCGTGCCCCGCGGCGTCATCACCGTCGCCTCCTGCCT
CACCGTCAAGGGCGCCGAGGACGTGCTCAACCGCAAGTTCGCCTTCGAGCTCTCTACCCCGGGCGACACCATGTACTTCG
TCGCCGACTCCGAGAAGGAGAAGGAGGACTGGATCAACTCCATCGGCCGCTCCATTGTCCAGCACTCCCGATCCATGACC
GACGACGAGATCGTCGACTACGACAGCGGCCGCCCCGCGGCCGGCGGCAAATCATAG-----------------------
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>chr3B_1_TraesCS3B01G401500
CATCTGACGGACAAATTCTTCGTCCATCAAAGCTGCCTTCGTGAGGAGACGGGGCCACGGCTGCTGG---TGGTGTTCCT
CCTTGCCGGAGGAGCCAACCCCCGTGGATGTCGTGGGGCCTGGAGAACGAGGACGACGGTGCCATGAACCGCCTGATGAA
GAGCTGCCATCGCTACTGCCTGCCTGCATGGAGAACCAAGACTTCGACATCATCGTTGGAGTTGG-GGGGCTCAGAAAGG
ACGGAGAGGAGGAGGGGCTCGAAGAGGACGAAGTGCGGATGTGCATCGCCGGCGCACGGCTTAAATAGCCGCGACCAGTC
CAGTCGAAGGGCCGTTCAACCCGCTTCAATGCGGCACAGCTATCGGAGTTGGTTTCTTAAGGACGCGGCATCCACATTGA
AGCGCCGACGTCCGAGAGGTCACGTCTATCAGCACCCCCCTCACGCCCGGTCACATCGTACAACATCACTGCCAGCCA-T
TGCATACTCTGGGCCGACATGAATATGACGCAGCAAGCGGCACAGACATTCGGTGGAAAAGCGCGGGAGGGGCAGGCGGG
AATTTTGGTGGGCCACGATCATCAGATGTGGACGTGCAGCGGTCCGGACGCCCGCAAAGGCCCCAT--------------
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--------------------------------------------------------------------TTTCATCTCGAA
TTTGCGGAAAAAACCCCGTTCATA--CCGTTAGCGGACCCATATAAATCCGTCTTGGATGACAAAACACATCCAAACATC
GCACCACCGTGACGGCTGTGGATGTTTAAGAGTCCGCATTGGAGATGCTGGAAGGCGAGAAAAAGAAAACCTGGAGACTG
TCTCTCTGCGATGACTCT----CTTTACGTTTTTCTTTTAGTTG----CTTTTAAGTTGTTTCTATCCACGTGAGCAACG
CAGATACACCGATACAA---ATCAGTTCGGTACACAGTCCGACCCCCAGCCCGTCCCGTTCCGTCAAAACCAGGAGGAAA
AACCAACCGAACGAACTCTC------------------------------------------------------------
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--------------------------------------CCGATCCGCCCGACCCGATCCCCAAATCCCTCCGCGTCTCAT
GGCGGCGAGCCTGTGGCGAGCGGTGATGGGCACCGGCGCCCCGCCCGCGGACGCCACGGACGGCATCGAGTTCTGGCGCG
AGCCCGAGCGCGGCGGGTGGCTGGACAAGCAGGGCGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAG
GGGAAGCTCTTCTGGTTCAAGGACTCGACCGTCACGCGCGCGTCCGTGCCCCGCGGCGTCATCACCGTCGCCTCCTGCCT
CACCGTCAAGGGCGCCGAGGACGTGCTCAACCGCAAGTTCGCCTTCGAGCTCTCTACCCCGGGCGACACCATGTACTTCG
TCGCCGACTCCGAGAAGGAGAAGGAGGACTGGATCAACTCCATCGGCCGCTCCATTGTCCAGCACTCCCGATCCATGACC
GACGACGAGATCGTCGACTACGACAGCGGCCGCCCCGCGGCCGGCGGCAAATCATAGATTCGTCGATTGATTC-GGTGAG
CAAAAGGACCGGTGAGGCGGTGTCACCTGTAATTCTACTGTTCTACATCGTCTTTGTCATATTTATCTAGATTCTTTTAG
TTCATATTTTCCACAGATATGATGTGTGCACCTGTATATTATTAGTGATTTT-------------AGGTGTCTTTATTTA
TACTATGGATCGGTTTTGTTCTTATAACTTT--TAAG---TACTGTTCGATTTGTATTTGGTCCTTAAACTTTC---TTA
TCCAAGTGTATATCTCAAGCCGTAGCAAATTGAACAAGGGGATGTTTCTCGGTGTTTTTGACTTCTGTACATGTAGAGTT
GTCTGATAATATTTGGCTTGTTATGACTGGATACATAGTGGCCCATTAACCGTAAAATCATGCATTG-----TATCTTGT
TCGTTCAACATCTTGGTTTGCCTACTCCAGCGAGAATGCTTGGTTGACCATGATGAACTCAGAGCAGTGTTTGTGTACAG
AA--AAAAAAGGCAACCCTCCTTTGCCTTCTGTCAGTATCAACAGACAGAAGCGACTGCATGATTGTGTTCCATTAACAT
A-----------------CTTGTGTTTTTATGAGCTTATCACTTAAAATAGCTTTTGTGCTAATCACTTAACCATGTTGA
GAACATCTGCAAAGCTGCAAATAGCAGTATTTAAGTACATCAATATGGTTA-----------------------------
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-------------------------------------------------TAAGCAAATCATGTGAAAACAGCTGTAAACA
GTGATGTTATGAGTAATGATACCTCCAATTATATTCCTTCACCTCATTACTGAACATGTCAGGTCCCCATCTCATCATTG
GAAATGGCTAAGCTCAAGAGCTGAATGCTTAACATCATTCCTAACATTATTGTGCCAT-CACGTGGTAGATACATGTGGT
CAGTACTGTACTTATGTTCCTGCAAAAAAGA---ATTGCATTTATGGAGATAATAGTTTCACAGTACATCCTGATAAGAT
AACTCTGTCTTATGCAGGCTAGCTGCGTAGATGTGTTTTTTCTGTTTCT------CTAATTATTTCCTGAC
>chr3A_43
------------------------------------------GAGGAGACGGGACCACCGTTGCTGCCGTTGGTCCTCCT
CCTTGCCGAAGGAGCTGG-CCGCGTGGATGCCGAGGGGCCCAGAGAGCGAGGATGGCGGTGCCAGGAACCGCCTGATGAA
GAGATGCCACCGCAGC-GCCTACCTGCATGGAGAACCAAGACTTCGACATCGCTGTTGGAGTTGGAGGGGCTCCGAGAGG
ACGGAGAGGAGGAGGGGCTCGAAGAGGACGAAGTGCGGATGTGCATCGCCGGCGCACGGCTTAAATAGTCATGACCAGTC
CAGTCGAATGGGCATTCAGCCCGCTTCAATGCGGCACAACTGTTGGAGTTGGTTTGCTAAGGACGCGGCGTCCACATTGA
AGCGACGACGCCCGAGAAGTCGCGTCTATCAGCGCTGCCCTCACGCCCGGTCACATCGCACGGCATCACTGCCGGCCGTT
TGCATACTCTGGGCCGGCATGAATATAACGCGGCAAGCGGCGCATGCATTCGATGGAAAAAGCGCGA-------------
---------------------------------GTGCAGCGACCCGCCCGCCCGCAAAGGCCTCA---------------
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--------------------------------------------------------------------TTTCATTTCGGA
TTTGCGGAAAAAACATGTTTAGATTGGTCAGTAAACCGATGTATACCT--GCCTTGAATGGCAAAACACATCCCGACACC
GCACGGCCACGACGGCTACGGATGTTTAAGGGTCCGCGTTGAAGATGCTACAAGGC-AGAAAAAGAAAACCTGGAGACTC
TCTCTCTGCGATGACTCTCTTTAAATTTTCT---------TGAGTTGCCTTTTAAGTTGTTTCTATCCACGTGAGCAACG
CAGATACACCGATACAAATCATCAGTTCGGTACACAGTCCGACCCCCAGCCCGTCCCGTTCCGTCAAAACCAGGGGAAAA
AACCAACCGAACGAACTCTC------------------------------------------------------------
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--------------------------------------CCGATCCGCCCGACCCGATCCCCAAATCCCTCCGCATCTCAT
GGCGGCGAGCCTGTGGCGAGCGGTGATGGGCACCGGCGCCCCGCCCGCGGACGCCACGGACGGCATCGAGTTCTGGCGCG
AGCCGGAGCGCGGCGGGTGGCTGGACAAGCAGGGCGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAG
GGGAAGATCTTCTGGTTCAAGGACTCGTCCGTCACGCGCGCGTCCGTGCCCCGCGGCGTCATCGCCGTCGCCTCCTGCCT
CACCGTCAAGGGCGCCGAGGACGTGCTCAACCGCAAGTTCGCCTTCGAGCTCTCCACCCCGGGCGAGACCATGTACTTCG
TCGCCGACTCCGACAAGGAGAAGGAGGACTGGATCAACTCCATCGGCCGCTCCATTGTCCAGCACTCCCGATCCATGACC
GACGACGAGATCGTCGACTACGACAGCGGCCGCCCCGCGGCCGGCGGCAAATCATAGATTCGTCGATTGATTC-GGTGAG
CAAAAGGACCGGTGAGGCGGTGGCACCTGTAACTCTACTATTCTACAT-GTCTTTGTCA--------TAGATTCTTTTAG
TTCATATTTTCCACAGATATGGTGTGTGCACATGTATATTATTAGAGATTTTTATTGGTGATTTTAGGTGTCTTTATTTA
TACTATGGATCGGTTTTGTTCTTATAACTTTCTTTAAGTATACTGTTCGATTTGTATTTGGTCCTTAAATGTTCTTATTA
TCCAAGTGTATATCTCAAGCCGTAGCAAATTGAACAAGGGGATATTTCTCGGTGTTTTTGACTTCTGTGTATCTAA--TT
GTCTGATAATATTTGGCCTGTTATGACTGGATATGTAGTGGGCTGCTAACCGTAAAATCATGCAATGCATTGTATCTTGT
TCGTTCAACATCTTGGTTTGCCTACTCCAGCGTTTC------GTTGACCATTATGAACTCAAAGCAGTGCTTGTGCACAG
AAAAAAAAATGGTAACCCTCCGTTGCCTTCAGTCAGTATCAACAGACAGAAGCGATTGCATGATTGCGTTCCACTTTAAC
ATGGATAGACATGTAGTGCTTGTG-TTTTATAAGCTTATCACTTAAAATAGCTTTTGTGCTAATCGCTTAACCATGTTGA
GAACATCTGCAAAGCTGCAAGTAGCAGTATTTAAGTACATCAATATGGTTCGGACGGGGAAGCGGGATCCTCTCCAGGAG
GTGGGTGCTTAGAGACAAAAAGTTCCGGTGCATAAAGTTGAAAAAGTTGAAATGGAGAGGAGGGATGCATGTGTAGTGAG
AGTCACTTTCTATTCTTTGATGAGGTCACTAGTAGTAGCTTGCATTGGGGAGAAAAATTCAACACATATGCTTCAAATTA
CTTTTTGTCATGAGGCATCTGTATTCATATGCCACCATTGTACATGCCCTAAGCAAATCATGCGAAAACAGCTGTAAACA
GTGATGTTATGAGTAATGATACCTCCAATTATATTCCTCCACCTTATTACTGAAGATGCCAGGTCCCCATCTCATCATTG
GAAATGGCTAAGCTGAAGAGCTGAATGC-TAACATCATTCCTAACATTATTGTGCCGTCCACGTGGTAGATACATGTGGT
TAGTATTGTACTTATGTTCCTGC--AAAAAAAACATTGCACTTATGGAGATAATAGTTTCACAGTACATCCTGATAAGAT
AACTCTGTCTTACGGAGGCTAGCTGCGTAGATGTGATTTTTCTGTTTCTGTTTCTCTAATTATTTCGTGAC
>chr3D_616
AAATCTCCCGACTCGCCCGACCGGATCCCCAAATCCCTCCACGTCTCATGGCGGCGAGCCTGTGGCGAGAGGCGATGGGC
GCCGGCGCACCGGCCGCGGACGCGGACTTCCTGGACTACATCGAGTTCTGGCACCAGCCCGAGTGCGCGGGGTGGCTGGA
CCAGCAGGGGGAGCACACCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAGGGGATGCTCTTCTGGTTCAAGGACT
CGGCCGTCGACCACGCGTCCGTGCCCCGCGGCGTCATCTTCCTCGCCTCCTGCCTCGCCGTCAAGGGCGCCGAGGGCGTG
CTCGACCGCAAGTTCGCCTTCGAGCTCTCCACCCCGGGCGAGACCATTTACTTCGCCGCCGGCTCCGAGAAGCAGAAGGA
GGAGTGGATCAACTCCATTGTCCTCCCACTCGCCGCTCCTGCAGGGACCACATGGGATGAAATTTTTCACATGGTGGACA
CGCTGCGCGAAGGGTTTGGAGCAGGAGGTTTAGATCCTTTTGTGGGAGAGTAGGCTATGTGTAGTGTGTTGGTGTCGGTG
TGTTGCTGTGGATTTCGCATTTGTTGACGGTTTCTTGTAATAATAACTCTCTATCTTCTCCTATAAGAATATGATACGTC
ATTGATGTATTCTCGAAAATAAATTCACAAGAAATTTTACCAAGTAATTTTTGTGTTATGTAGAGATGTGAAAAAGTAGG
ATGAATGTGGCAAAGATGATGAGCAAATTTAAATGAACCCCTCTCCTTTTAATCGTTTTATTAATAGTACGAGATGATAT
AACTTAAGATTTAAATAAAAAGGCTATGCTAGTCCCCTCACGCTTGAGTCATATCTTGTTTGACGGGTCCACGATCACGC
AATGATGCCAAGGGAATTAATATCATATATATATATATATATATATATATATATATATATATATATACACACACACACTT
AATCAACGTAAGTATATTGTCATCAATATTAAAATATGATTAAGGGCATGATTATACTTTCAGGTGCATCTAGCGTCGTC
GGAGTGCATGTGGATGTATGTTTTCGACAGATCATGTGGGATTGATGTGTGTATCCACTTGATCCAGTCTTCGTTCGTCG
ATGTTGGATCCTTTCGATCTAGTGCACTGGTCCTAGGACCTTAGCATGACGACTTCTCAACTGTCTAGGTTTGTCCGACT
TCGATGAGGAAGGGTCAACGATGACGATGCGTCTTTGGCTCATCGCTTCTTGTGTTCTTTTATGTTGTCAGCATGTTTGA
TAAATATTGGAAGTTTTTCTCAAGATTTTTTTTCCAATAACAACTCCCAGTAGATGTAAAAAATACTCCCCGTAGACGAG
TTAACGCCTTCGATAGAAAGGGCGGATAAGGGTATCTCCAACGCTGACTCGCAAACCGAACACCGTAACTGTTCGCGAAC
CGAGGGAGGGGGCAGTCCGCGGATATGGATGTGGGAGGGGGTCATCCAATGCTATCCACATACATTTCAAAACAAGTTTA
ACAAACCGAACGAAATTTATCAAACAAGTCGGATTTTATTAAAGTTCAGACATAATTTACACAAAATCAATCAATATTTT
GACCATTCAACTAAAAATTGGAAGGAAGAAAAAACCCTAAACCCTATACCGGACGATCGACCACCCCATTTCGTCTCGAA
TTTGCAAAAAAAGAAAGTGTTCAAACCCGTTAGCGGACCCATGTAGATCCGCTTTGGAAGGCAAAACATATTCGGACATC
GCACGGTTGCGACGGCCGTGGGTGTTTAAGGGTACGCGTTGGAGACGCTGTCAGGCGAGAAAAAGAAAACCTGGA----C
TCTCTCTGCGATGAGCCGATGACTTTAAGTTTTTTTCTTATGAGTTGCCTTTTAAGTTGTTTCTATCCACGTGAGCAACG
CAGATACACCGATACAAAT---CAGTTCGGTACACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATCCGCCCGGCCCGATCCCCAAATCCCTCCGCATCTCAT
GGCGGCGAGCCTGTGGCGAGCGGTGATGGGCACCGGCGCCCCGCCCGCGGACGCCACGGACGGCGTCGAGTTCTGGCGCG
AGCCGGAGCGCGGCGGGTGGCTGGACAAGCAGGGCGAGTACATCAAGACGTGGCGGCGGCGGTGGTTCGTGCTCAAGCAG
GGGAAGCTCTTCTGGTTCAAGGACTCGACCGTCACGCGCGCCTCCGTGCCCCGCGGCGTCATCGCCGTCGCCTCCTGCCT
CACCGTCAAGGGCGCCGAGGACGTGCTCAACCGCAAGTTCGCCTTCGAGCTCTCCACCCCGGGCGAGACCATGTACTTCG
TCGCCGACTCCGACAAGGAGAAGGAGGACTGGATCAACTCCATCGGCCGCTCCATTGTCCAGCACTCCCGGTCCATGACC
GACGACGAGATCGTCGACTACGACAGCGGCCGCCCCGCGGCCGGCGGCAAATCATAGATTCGTCGATTGATTCGGGTGAG
CTAAAGGACCGGTGAGGCGGTGGCACCTGTAATTCTACTGTTCTACATCGTCTTTGTCATATTT------ATTCTTTTAG
TTCATATTTTCCACAGATATGATGTATGCACCTGTATATTATTAGTGATTTT-------------AGGTGTCTTTATTTA
TACTATGGATCGGTTTTGTTCTTATAACTTTCTTAAG---TACTGTTCGATTTGTATTTGGTCCTTGAACGTTCTTAT--
-CCAAGTGTATATCTCAAGCCGTAGCAAATTGAACAAGGGGATGTTTCTCGGTGTTTTTATCTTCTGTGTATCTAA--TT
GTCTGTTAATATTTGGCCTGTTATGAGTGGATATGTAGTGGGCTGCTAACCGTAAAATCATGCAATGCATTGTATCTTGT
TCGATCAACATCTTGGTTTGCCTACTCCAGCGTTTA------GTTGACCATGATGAACTCAAAGCAGTGCTTGTGCACAG
AAAAAAATGG-----------------------------------------------------TTGCGTTCCATATTAAC
ATGGATAGATATGTAGTGCTTGTGTTTTTATAAGCTTATCACTTAAAATAGCTTTTGTGCTAATCGCTTAACCATGTTGA
GAACATCTGCAAAGCTGCAAGTAGCAGTATTTAAGTACATCAATATGGTTA-----------------------------
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-------------------------------------------------TAAGCAAATCATGTGAAAACAGCTGTAAACA
GTGGTGTTATGAGTAATGATACCTCCAATTATATTCCTCCACCTCATTACTGAAGATGGCAGGTCCCCATCTCATCATTG
GAAATGGCTAGGCTCAAGAGCTGAATGC-TAACATCATTCCTAACATTATTGTGCCGT-CATGTGGTAGATACATGTGGT
TAGTATTGTACTTATGTTCCTGCAAAAAAAAAATATTGCACTTACGGAGATAATAGTTTCGCAGTACACCCTGATAAGAT
AACTCTGTCTTGCGCAGGCGAGTTGGGTAGATGTGATTTTTCTGTTTCT------CTAATTA---------
>SNPs
S-SSSSS-S---SSSSS-SS-SSSSSS-SS-SS-S---S-SS----------------S-S-------------S-----
--------S------SSSS--S--------S--S-------S----S-----------------S---------------
---S-----S---S--S----------------------------------SSS----------------------S---
--------------------------------------------------------------------S-SS--------
--------S--S-S----S-------------------S--S--------------S-----------------------
----S-----S------S---S-----------S--S---------------------S---S----------S------
----------------S------------------------S---S---------------SSSS-SSSS--SSSSS-S-
SS--SSS----SSSS--SSSS-SSSSSSS-SSS--------SS---SS--------------S--S--------------
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--------------SSSS--SSS----------------------S-----S--------S------------SS-----
----SS---S--------------------S------S------------S----------------------------S
---------------------------S------S-S---SSS-------------------------------------
--------------------------------------------------------------------------S-S---
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-------------------------------------------------------------------------S------
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----S---------------------------------------------------------------------------
---------------------------------------------------------------S----------------
------------------------------------------------------S-----------S-------------
-------------S------------------------------------------------------------------
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----------------------S-----------------------------------------SSS-------------
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----------------------------------------------------------------------S---------
--------------------------------------------------------------------SS--S--SSS--
-----------------S---------------SS------S-SSS------------------S---------------
--------------------------------SSS-SSSSSS-------------------S-------S-----S----
---------S--S--------S--------S------------------------S----------S--------SSS-S
-------------------------------S---------------------------------S--------------
--------------------S-----------------------------------------------------------
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--------------------------------------S---------------S---S---------------------
----------------------------S---------------------------S-----------------------
S----S-----------------------S----------S---------------------------------------
------------S----------------------S------------------------------S----
>forward_39
-------------------TCGTCCATCAAAGCTGCCTT-----------------------------------------
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>reverse_3213
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------------CAACCCTCCTTTGCCTTCTG------------------------------------------------
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