>input_sequence_79614
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-----------------------------------------------------ATGGCTGGAATCAATACAGCGCGGAGC
TCCAAACGCGATGTGGGAAGAGTTTTCTGCAGGTTGCTATGGTGCAGGTTTGGCAGAAATCAACACCAAGTGTTATTTCA
CAAATTCCACAGCGTCAACCAAGTCGGCACTGTGGAAGAATATGTGGAGCAACTCGCGGAGTTGTATGATCAGTTGTCCG
CTTATGAGTCTGGTCCTCAATCAGTGCATTATGTCACCAAGTTCATTAATGGGTTGCAGCCAATAGTGAGAGTGATGGTG
GCCCTGCATCAGCCGCAAGACTTGGATGCAGTGTACGAACTAGCCCTGTTACATGAAACTGTGTCAGTTCCTACTCCTCA
CCAAGGTACTAGTATCAAAAGGGAGCAGTACAATTTGTCGACAACTTCAATCAAACATCCAACTGTCAAGTCTGTTGAAG
ATGGAAGGAATAAATTTGAGTCTCACAAGTAA------------------------------------------------
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>chr2B_1_TraesCS2B01G161800
CCGTCCCAGAGTGGACCCAGTGAACTGCTATTCTATATATGTAACAGGTAGAATGGCCGAAAGGGGTAGGAGGGAAGGAA
CGGCTTTGGACGGATGGATAGGCTTGTGTGTGTGTGGCTAGCTAGCTCTTGCTTCTTCTTCCTCTCTGTACGCTGAATTT
GAATTCCCCCATGTACTGAGAATTGGTTGGTTTATAGCTAGATCGAGAGAGCAATTCGGTGCTTACAATTAGCTAGCTCT
TGCTTCTTCTTCCTCTCTATACGCTGAATTCGAATTCCCCCATGTACTAAGAATTGGTTGGTTAACAGCTAGATCGAGAG
AGCAATTCGGTGCTTACAATTGGTATTGGAACTGTAGATCCCGGAGCAGCGAGTTCCAAGCCACCATACGCACGCGACGA
GGTTCGCGGCCCGCCGCCAATGAGAAATCATGGAGAGCCTGACGCCG-CGATGAAGGCTGTGTACGGGTTCCTCAAGGAC
GACCTGGCGGAGTCCCTTGATGTA-GTTTCAAGCGCCAAGATGAAGACGCGGCAAAATCGATGTGATCCATCATGGGCAA
TCTGACGATGAGGATTGACAACCTCAAGTTGTTGATCGGAGTTGACATGGACGAGATCCGTGCCGGAATGGAGCGTCCAC
TGCCTGCTATCACCATGGCTTCGGGTGACCGTCAACAACCTTACCAATCAGTGATGGGAAGCGGCGAATCCGGCCTGGAA
GGTAGTCAATCTGATCCGGTCACCAAGGGGAAGGATTATGCTCCTTACATCCCTCCATAGGCCAAAGGTACGAGATCCGA
CCTCAGCCCTGCATCCAGTTCTCGTTTCGCTGATCACCACCGATC-----------CATATACCTACAGTCCTCAAATTG
ATCTGCCCCATTTCGATGGCACAAATCCGAGGTTGTGGCAAATGAGGTGTGAAGATTACTTCAGCATGTGTGGAATGCCC
CGTATGCTTCGGGCATAGTTTGCTTCTACCATGTTTGAGGGCCCAGCGGCGAGATGGCTGGAATCAATACAGCGCGGAGC
TCCAAACGCGATGTGGGAAGAGTTTTCTGCAGGTTGCTATGGTGCAGGTTTGGCAGAAATCAACACCAAGTGTTATTTCA
CAAATTCCACAGCGTCAACCAAGTCGGCACTGTGGAAGAATATGTGGAGCAACTCGCGGAGTTGTATGATCAGTTGTCCG
CTTATGAGTCTGGTCCTCAATCAGTGCATTATGTCACCAAGTTCATTAATGGGTTGCAGCCAATAGTGAGAGTGATGGTG
GCCCTGCATCAGCCGCAAGACTTGGATGCAGTGTACGAACTAGCCCTGTTACATGAAACTGTGTCAGTTCCTACTCCTCA
CCAAGGTACTAGTATCAAAAGGGAGCAGTACAATTTGTCGACAACTTCAATCAAACATCCAACTGTCAAGTCTGTTGAAG
ATGGAAGGAATAAATTTGAGTCTCACAAGTAAGCTACTGGGGAGGACAAATGGAGTGCCTTGTGTGCTTACCGCAAGGCC
AAGGGTCTGTGTTTCATGTGTGGGGAGAAAAGGAGCCGTGACCACTAACGCAAGCAATCGGTTTCATTACACATGGTGCA
AGAAATGGTGGAATTTTTTCAATGTTCTGCTTCTGAGGATTGTGAAACTGATGGGGAAGAGGAAGTAAACCTCATGGCCA
TATCAGAAGCAGCTGAAAGCAAGACTACTCATAGCAAGTCTTTCCAGCTTACTGTTAATTTCAATGGGCACCAGAAAATA
TTTCGTGTCGATTCAGGTAGCAGACACTCCTTCATAGATACTAATTCTGCAGCGCACAACTGTTGGTGTTCAGAGTTGTG
CTATGATGAAGGTTAAAGTAGCAAATGGAAGTTTCATGAGCTGCAGCAACATTATTCCAAAATGCCAGTGGTCTGTGCAA
GGAGTTTAGTTTGAAGATGATCTCAGGGTGCTTCCTCTCAGTTGTTATGATGGTATTCTGGGGTTGGACTAGTTGGCACA
ACATAGTCTGATGATGGTCGATTGGGAGCAACAATGGATGTCATTCCCTATTAATGGTCGTTCAGTAACATTGCAAGGAG
CAGTGCATGTGGAGTTTCCTTATACTACCATTGAGTTATCAGTCATAACTGATGAAAATGCTCCTGAACTATTGCCAGAG
ATTCAGGAACTGGTGGAGAAATTC--------------AAAGATGTTTTTGTTGTGCCAATAGAGCTACCACCAGAGAGA
GCTTGTGATCATTCCATCCCTCTTATTCCTGGGGCCAGACCCTTCTCTCTCTGTCCCAATAGATTAGCACCTGAACTGAA
GGATGAGGTGGAGAAACAGATACAAGAATTGTTGGACTTGGGAGTGATCAGAAGAAGCAACAGTCCTTTC-TCTTCTCCA
ATATTGTTAGTTAAAAACAAGGATCACACCTGGAGATTGGTTGTGGATTATAGACACTTGAATGCACTGACCATAAAAGG
GAAGTTC
>chr3A_307
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------------------------------------------------------------------AGCTAGATCAAGAG
AGTTATTTGGTGCTTACAATTGGTATCAGAGCCATAGATCCTGGAGCGGCTATTCCCGAGCCACCATTCGCAGGTGACGC
GATTCGTGGCCCGCCGCCGATGAGAAATCATGGAGAGCCTGTCGCCGGCGACGAAGGCTGTCTACGAGTTCCTCAAGGCC
GACCTAGCAGAGTCCCTCGACGTCCGTTTCAAGCGCCAAGACGAAGATGAAGCAAAATCGACGCGCTCCATCGTGGGTGA
TCTGACGGCGAGGATCGACGACCTCAAGCTGTCGATAGGAGTCGACATGGACGAGATCCACGCCGGAATGGAGCGGCCAC
CAGCTGCTACCACCACGACCTCGGGCGACCGCCAACAGCCGTGCCAATCAGCGATGGGAGGCGGCGAATCAGGCCCGGAA
GGCAGTCGCCCTGCTCCGTTGACCAAGGGAAAGGATTATACTACATACATCCCTCCCCCGGCCAGAGGTACAAGAACCAA
TCTCAACCCTGCCACCAGTTCTCGTTTCACTGATCACCACCGAGAAATTACTGACTCATATGCCTACGGTCCACGCATTG
ATCTGCCCCGTTTCGATGGTACAAAACTGAGGCTATGGCAAACAAGGTGTGAAGATTACTTCAGCATCTGTGGAACACCA
GGAATGCTCTGGGTACAGTTTGCTTCTACCATGTTTGAGGGGTCGGCGGCGAGATGGCCGGAGTCAGTCCAGCGCAGAGC
TCCAAACGTTGCCTGGGAGGAA--TTCTGCATGCTGCTACAGTGCAGATTCGGCAGAAACCAGCATCAAGCGTTGGTCCG
CAAACTTCACAGTATCAACCAAGTCAGCACGGTGGAAGAATATGTGGAACAATTCGCTGAATTATATGATCAATTGTTTG
CTTACGAGTCTGCTCCAGAATCAGTACACTATGTCACCAAGTTCATTAATGGGTTGCAACCGACAGTGAGGGTGATGGTG
GCTATGCATCAGCCCCAGGACTTGGATGTAGCATACGAGCTGGCTTTGTTGCATGAAACCATGACAGCTTCTGCTCCTCA
CCAAGGTATTAATGTCAGAAGGCAGCAATACAACTCGTCAATAGCTTCAGTCAAACACCCGGCTGCCAAGTGGACTGAAG
ACACAAGGAGCAGCTCTGAATCTCACAGGCAAGCATCAGGGGAGGACAAATGGAGTGCTCTGCGTGCTTACTGCAAGGCC
AAGGGTCTATGTTTTATGTTTGGGGAGAAATGGAGTCGAGATCATCAGTGCAAACAAACAGTCTCGCTGCATGTGGTATA
GGAGATGATCGAATTTTTTCAGTGTACTGCAACTGAAGGTTCAATTACTGATGGCGAAGAGCAAATCGATCTCATGGCGA
TATCTGAAACTGTAGAAGGTAAAACTGCTCGTAGCAAGGCATTTCAGTTGGTGGTACAGCTCCAAGGGCAAGAGAAGACA
TTCTTAGTGGACTCGGGAAGCACCCACTCCTTTGTGGACACCACAACAGCAACTGCACTGTCAGGAA-TTCAGAATTGTG
CTCCAGTGAGAGTCAAGGTAGCTAATGGTGGTATCATGAGCTACTGTAGTATCATACCCATGTGTTAGTGGACTACACAA
GGATTTTAGTTCGAGCATGATCTCTAGATTCTTCCTCTCAGCCGTTACGATGGGATACTGGGCTTAGACTGGTTGGCAAA
ACACAGCCCGATGACTGTAGATTGGGATCAACAGTGGACGTCTTTTCCCCATCAGGGTACTATAGTTACCTTGCAAGGTG
TTGTGCTTGTGGAGTTTGCTTATACAATCATTGATATGTCTATTGTGATTGAAGAGAATGCTCCAACTATACTGCCAGAA
ATCCAAGAGCTTGTTGATCAATATAAGGTGATCAATATAAGGTTGTTTTTGTTGTACCGGTGGGTTTGCCTCCTGAACGA
GCTTGTGATCACTCCATTCCACTTATACCTGGAGCTAGGCCTTTCTCCATCAGACCCTATAGATTAGCTCCTGAATTAAA
AGATGAAGTAGAAAAACAGATCCAGGAAATGCTTGATTCAGGTGTTATCACAAGGAGCAACAACCCCATTTTCTTCTCCC
ATTCTGTTAGTTAAGAAGAAGGACCACACTTGGCGCCTCGTGCTGGATTACAGACATCTGAATGCATTGACAATAAAAGG
GAA----
>chr6B_331
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----------TGCTTACATTTGGCATCAGAGCTACAGATCCTGGCGCATCAAGTTCCAAGCCACCACCCGCACGCGACCA
GATTTGCGGCCCGCCGCCGCCGAGAAATCATGGAGAGCCTGTCGCCGGCGACGAAGGCGGTGTACGAGTTCCTCAAGGCC
GACTTGGCGGAGTCCCTCGACGTGCGGTTCAAGCGGCAGGATGAGGAGGCGTCCAAGTCCATGCGCTCCATCGTGGGCAA
TCTGGCGACGCGGATCGACGACCTTAAGATGTCGATCGGGGTCAACATGGACGAGATCCGTGCCGGAATGGAGAGACCGC
CGACCGCTATCTCGTCATCCACGGGCAGCCGCCAGCAAGCGAATCTGCTCCAGATGGGAAGCAGTGAAGGAGGAGCGGAA
GGCAGTCGTTCAGCTCCGCCAGCCAAGGGGAAGGATCATGTTCCATACGTGCCTCCTCCAGCCAGAGGTACGAGATCTGA
GCTCAATCCCGTCCAGTCTGCTCGCTACTCTGAATTTCATCGAGAGACTGAGCAATTTGGTTTTGGCCCC---CGCATTG
ATTTGCCTCGTTTCGATGGAACCAATCCGAGGCTGTGGCAAACGCGATGTGAGGATTATTTCAGCATGTGTGGGACGCCC
CGTCAGTTATGGATACAGTTCGCTTCCACCATGTTTGAGGGGCCGGCAGCTCGATGGCTTGAATCTGTGCAGCGTAGGGT
TCCAGGCGCGTCATGGGAGGAA--TTTTGCAGGCTGTTGCAGTGCCGGTTTGGTCGAAATCCACATCAGGCACTTGTGCG
CAAATTCCACAGTATCTCTCAAGCGGGCACTATGGAGGAGTATGTGGAGCAGTTTGCAGAGTTATATGATCAGCTATCGG
CATATGAGGCGGTACCTGAATCA---------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S----
--SS---S------------------SS--S--S-------S--------S----------------S------------
-S----------------S----------------------S---------S--------------S-----------S-
-----------------S--S--S-----------------------S---------------S-S------S-------
--------S------S---S--------S---S---------S--------------------------------S----
S-S------------S-S-S-----S-----S--------S----------S------------------S----S----
--S----SS----S----S-S-----------------------S-----------SSS-----S---------------
S----S------SS--------------S--------------SS----------------S-----S----S-SS----
---------S---------S------------S---------S--------------------------------S----
--------SS---S-S-------------------------S--S---------------------S-S------S----
----------SSS-----S--SSS---------S-----SS------------------------S----S---SS-S-S
------------SS--------------------------------------S----S-----S--------------S-
------------S----S-------S--S-----------------------------S--S-S------S---------
--SS----------S--S----------S--SS-----S--S--SS----S--------SS--S---S-S--S-------
--------S--S-S---S----S----S-----S-S---S-S-S-----S-------S--SS---S-----SSSS-----
-SSS-----SS-SS-S---S-------S-S----SS-S--------------------SS--S--------S--------
--------S-----S----S----------S----S--S--S--SS-SS----S---S-S--S--SS-S--SS----SS-
S--S---S-S-----------S---S----SS----S-S--SSSSS--------S------S--S-SS-S--------S-
----S---S-S-SS---S-S--S---S---S-------S-S--S---S-SSSS--SS-SS--S-S-----SS----S-S-
--SSSS--S--S--S--S----SS--------SS-S--S--S-SSS-S---S-SSSSSSS-SSS-SSS------S-----
--SSSS---SS--S--S-----S-----SS--S---------S-S-S-SS--S--S--S-SS--SS-----S--SSS---
---S-------S--SS--------SS-S-S-----------SS----S-----S--S-----S--S----S-------S-
---S--S-S-----SS--S--------S-----S----S---S--S--SSS-S-S---SS-SS---S--S--------S-
SS----S----------S-------S-S------SS-S--SS-SS-S-S---S--S--------SSSSS--S-------S
--S--S--S--S--S--SS---SS----------------S-S------------S--SS-S-SSS-S--S--S--SS--
-----------S-----S--S-----S-----S--S--S--S-----SS--S-S---S----------S------S-S--
S-----S--S--S--------S--S---S--S-S--S-SS--S--S----S---S-------SS--SS-S---------S
--SS----------S--S-----S-----S---S-SS-S--SS-------S-----SS--------S----S--------
---SSSS
>forward_25
-----CCAGAGTGGACCCAGTGAAC-------------------------------------------------------
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>reverse_1562
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-----------------------------------------CCACTAACGCAAGCAATCGG-------------------
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