>input_sequence_79610
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----------------------------------------ATGGACATGGGGAG------------GGGGATGGGGATGG
GGATGGGGATGGGGAGGGGGATGGACAGGGAGGACGGGCTCAACCTCAGCTTGTCACTGCAGCGGTCGCCTTCGTCGCCG
CCGAGGTTCCAGGCGGTGTTCGCCTGTTGCTACTGCCCCAGGAAGTTCAGGAGCTCGCAGGCGCTCGGCGGCCACCAGAA
CGCGCACAAGGTCCAGCGCAACCTGGCCAGGCGAGGCCGGGACGCCACCACGGCGCTGTCGTTGGCGGCGGCGGGAGATC
AAGGTAAGGCCGCCGTCGATGACGACAGCGCTCCGCTGCGCCCAGCGGACCCCGACGCCGCCGACGCGTGGGGAGGGGGG
AGGGTCTACCCTCCTCATCGCCAGCAGGGCTCGGGAGCAGCCTCGTCCGGTGCGGCAAGAGGCAACGAAGAGCTTGCGGA
TGAGATGATTGACCTGTCCCTGAAGCTATGA-------------------------------------------------
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>chr2A_1_TraesCS2A01G312200
GTGTATAATATATTTTAGCCTTCTCTAAATGGCATGGAATATATATAAAGCCGTCTTATAAACTAGATGTATCCTAATTA
TGTGGTGAGAGATACCATTTCTAAGATATATGATATCTTAATTAAGAGAATTTACAAAACAAAAATCTCAAGGTAAAACT
TTC-----TTTTTTCTAGTTT-----------------ATTTATCCTGCGTGACATACTATCACATGCCTAACGCTGAGA
CCCGAAAAAACACTATGTATTCCATTAGAACATGCATAATGATCTCTTAGAAAAGCACATGCCCGAGGAGACAGGGACCA
TACATACCCATGCAATGATGCATATCTCTACATGGTTCGATCAGGGGCTTGGCTTTTGCTGGGCTATGTACCCAGTACAT
ATCAATGTTAGCTAGGTAGATTGATCTAGTGCATTCCTAATAGGACATCGGCCATGTCTGTGGCCATGAAAGCCTACCCG
TGTTGGCCTTTGGACCCGTGCTGCACCGCAACTGCATAGGAGCGCAGCCAGCACAGTGCCATGCACATACACATCGAACA
GTTCCGATGTGAAAGCTAGCTATAAGGCGGAAACGGCTCGGGGACATGTAGATCAGTAGTAGATGTGTAGGGTGGTCATT
GATCGCGAGAGCACTGACCAGGCAACAGGCCAGGAAAGAGAGGCGCGGATTAACCATCCTCGGCAAGCATGCATGCTCCA
GGAGTGCAGGACGCAGCGTCTCAGGCAGTCAGGCTCGGGCGCCGGGCGTTGCGTTGAGTGCCGTCAGTTTCATAGCTGGT
TTTTACTGCAAAT-------------------------------------------------------------------
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----------------------------------------------------------------------ATGTGTCCAT
GGAGTCTCCACTGTTTGGCTTGGTCTCCGACAGGGCAGCCCCACATCCACCCCCGGCCGCGCCATAATATCATGGCACCT
CTCCGGGGGAGGGAGCTGCCTGATTGATTGCCACATTGTGTATATCCACTTCCAGTCTCATTTGTGGGTTCTCTCTTGTA
CCTGAGGTAGCTA-GCCTGTCGCCCGGCGCCGGTTGCGACATGGACATGGGGAG------------GGGGATGGGGATGG
GGATGGGGATGGGGAGGGGGATGGACAGGGAGGACGGGCTCAACCTCAGCTTGTCACTGCAGCGGTCGCCTTCGTCGCCG
CCGAGGTTCCAGGCGGTGTTCGCCTGTTGCTACTGCCCCAGGAAGTTCAGGAGCTCGCAGGCGCTCGGCGGCCACCAGAA
CGCGCACAAGGTCCAGCGCAACCTGGCCAGGCGAGGCCGGGACGCCACCACGGCGCTGTCGTTGGCGGCGGCGGGAGATC
AAGGTAAGGCCGCCGTCGATGACGACAGCGCTCCGCTGCGCCCAGCGGACCCCGACGCCGCCGACGCGTGGGGAGGGGGG
AGGGTCTACCCTCCTCATCGCCAGCAGGGCTCGGGAGCAGCCTCGTCCGGTGCGGCAAGAGGCAACGAAGAGCTTGCGGA
TGAGATGATTGACCTGTCCCTGAAGCTATGATCGCTCGATTCAGATGCAGGAGCATGGGCTAGCTAGCTTGGCCCGAGCG
GCATGAAGTTCCCCTCTTCCATTTGTTTCATTTCTGCGCGTCATTTCTTGTGTGTGTTTCTGCTATCGCTTATCAGGTTA
ATTATTGTTGTTGGCTGGTTTCTGCAATGGGCTTGAAACTGTACTCGATCTTCAGGTATCTCCATGCATGGATATTGTTA
ACTATACTGATCAGAAGCCTTTTATTTTATGGAACTGTTTGCAGTAATCTACTA--------------------------
--------------------------------------------------------GTTCTTGCC-------TGTAAATG
ACAAAATGTGCGGTCCTAGAATAACTTATCTCTTTGATAAATCTAGAGTAATGTTGAACTCTTTACATTCCCAGTTCTGG
TTAACTAATTCAACTACCTAGCTGCCTCCTTGTTGCTTCAAGGGTTTCTCATGATCAGTTTAACTCTTCCGGATTTACAT
GACCAATTGCCGTTGGTAGGGCCTTGTCCTAGGGAACTCCTGTTTAGATAGAGTGAAAATTACTAGCACAGCACAGCACT
AGCTAGTATACTGATGAGAGACACCTCTGCCTCAGATCAGACGCCTTAATTGTTGAGATTTACATCCTTGCGTGATTCTC
CCTCGTCCCAAGTTGAGTCATTTATTTTAGAATGTTGTATTAATTTTAGTACAAAGTTAATACAAATTCGAGTCACTTAT
TTTAGAACGGAAGGAGTATATACTACTTCATTATAGGGGAAACGCGCGCATTCTTATGTTTTTAAAC----AGGCAATGC
GTCTGGTCGGTTTTTTTAGTATATTGATTTACATCCTCGTGTGATATAATATGTT--------TAATTTTAGCGGAACTA
TTCGCATTTTCTTTTGTTTTTTTAATTGAGAGGCAATTCATTTGGCCGGTGTTTTCAGTA--------------------
----ATTAACTAGTACTGCTAACGCTGACGGCCATTCTTTTTTGCTTTTGCTGTTTCCCATCTGGGAT----TCTGGGTA
TAGGATGAACGGGAACACACTAGAATGCTAAAAACATAGA
>chr2D_6
-----TAATATATTTTATTCCCTTTCTATGA-CATGGAATACATATAAAGCTGTCTTGTAAACTAGATGTAT-CTAATTA
TGTGGTGAGAGATACCATTTCTAAGAG--ATGATCTATTAATTAAGAGAATTTACAAAACAAAAATCTCTTAATTAAGAG
AAGTCAATTTTTTTCTAGTTTCTCTCCTTCACTTCAGCATTTATCCTACGTGACACACTATTACATGCCTGACGCTGAGA
CCCGAAAAAACACTATGTATTCCATTAAAACATGCATAGTGATCTCTTCAAAA---ACATGTCCGAGGAGACAGGGACCA
TAGATACGCATGCAATGATGCATATCTCTACATGGTTCGATCTGGGGCTTGGCTTTTGCTGGGCTGTGTACCCAGTACAT
ACCAACGTTAGCTATGTAGGTTGATCTAGTGCATTCCTAATAGGACATCGGCCATGTCTGTGGCTATGAAAGCCTACCCG
TGTTGGCCCTTGGACCCTTGCTGCACCGCAACTGCATAGGAGCGCAGCCAGCACAGTGCCATGCACATACACATCGAACA
GTTCCGAGGTGAAAGCTAGCTATAAGGCGGAAACGGCACGGGGACATGTAGATCAGTAGTAGATGTGTAGGGTGGTCATT
GATCGCGAGAGCACTGACCAGGCAACAGGCCAGGAAAGAGAGGCGCGGATTAACCATCCTCGGCAAGCATGCATGCAGCA
GGAGTGCAGGACGCAGCGTCTCAGGCAGTCAGGCTCAGGCGCCGGCCGTTGCGTTGAGTGCCGTCAGTTTCATAGTTGGT
TTTTACTGCAAATATGTGTGATGGCAATAAGCCATGCACACGGCCATGGCGACTGGCATGAAGATGACCAGATTGAGTCC
GTAGCGTGTGTGTCCCCCAGCGTGAGCCCGTGGTTGCGTTCGTGAAGTGGAGGAGCTGCATGCGGGGAGCCGTTGCGATC
TGTTGGAGTCAGGTGCGGCGTGCGCGCGGCTGGAGGGAGTTAGTTGCAAGCTAGCTAGATGGTTGGCCCGGCGGGTCATG
TGGTCATGCATGGGCTAGCCCGGCGGGTCATGTGGTCATGCATGGATATGAATCCTGCATGTAGTGGTTAGCTTAGTGCG
TGAGTTAGTTGCCGGGTGTGCCAGCCGTGTGGTGTGTGTGCACGGGTATAAAAAACCCTCCTCCGTATATTGATCGAGTT
GCGCCGGTGTGGAGCCGAGGGTAGCCATGTAGCCACTGTAAAGAGGAAAAGGATTGGGGCGTTCGTGCGTCCATGGCGGC
GTTTGTGCGCCGGCCCGAAATTTCTTGTGTCTTGTGTCTTCTTCTACCTTTAGCCGTGTGTGAGAGAGGAGGCTGCGGTT
CCAACAATTGGTATCATGAGCTTAGTGTCTTGGGCGTGCTTGCCGTGACGGAGGCGTGGCAGCGATGGCGGCGCTCGCCG
GTGGCTGCACGACGGAGCTCCGGGCCGTGTGTGGGCCCAAGGAGGTGGGCGGCGTTGTGGCTGTCATGGTGCGTGGCGGA
GGCGGCGGGCGGTGACGTCGTACGTGCGGCGACCGCGGAGGCCGGCGAGGCGCTGCGTGGTGGCGCAGGGGCGCAGCATG
GCGTGGAGGCACTACATGGCGGCATGGAGGCCGCGGCGGTGCAGGGCAATAAGCCGTGGCGGCGAGCCGGGCGCGACCGG
TGCGTGTTATGGGTGCGCACTGGACGTGTCGGGACCGCGGGCGCGCGGTGAGCGTTTGGTGCAGTCGGACTCGTCGAGCG
CGTCGGATGCGCGCGGGACGTGCGGGACGCACTGGTGTGGTCGGGCTCGTCGGGCGCGTCGGATGCGCGCGGGACATGCG
GGACGCACTATTGCGGTCGGGCGCGTCGGGTGCGCGCGAGACATGCGGGGCGCCGAGGGACGCCAGGCATGTGTCGCCGG
CGGAGAAGGAGCTCGGCGTGTGTCGCCGGAGTCGTGACGGAGCACGATGCGACCGGCGTCGTTGCGCCAGGTCGGGTCCG
CGGACTGGGTCACGGTCGTGGCGAGATCGATGACGGGAGGTGCAACAACTCCGACGACGACGATGTCATGGCTTAGGGGG
TGAGTGATGGCAATAAGCCATGCACACGGCCATGGCGACTGGCATGAAGATGACCAGATTGAGTCCGTAGCGTGTGTGTC
CCCCAGCGTGAGCCCGTGGTTGCGTTCGTGAAGTGGAGGAGCTGCATGCGGGGAGCCGTTGCGATCTGTTGGAGTCAGGT
GCGGCGTGCGCGCGGCTGGAGGGAGTTAGTTGCAAGCTAGCTAGATGGTTGGCCCGGCGGGTCATGTGGTCATGCATGGG
CTAGCCCGGCGGGTCATGTGGTCATGCATGGATATGAATCCTGCATGTAGTGGTTAGCTTAGTGCGTGAGTTAGTTGCCG
GGTGTGCCAGCCGTGTGGTGTGTGTGCACGGGTATAAAAAACCCTCCTCCGTATATTGATCGAGTTGCGCCGGTGTGGAG
CCGAGGGTAGCCATGTAGCCACTGTAAAGAGGAAAAGGATTGGGGCGTTCGTGCGTCCATGGCGGCGTTTGTGCGCCGGC
CCGAAATTTCTTGTGTCTTGTGTCTTCTTCTACCTTTAGCCGTGTGTGAGAGAGGGCTGCGGTTCCAACAATGTGTCCAT
GGAGTCTCCACTGTTTGGCTTGCTCTCCGACAGGGCAGCCCCACATCCACCCCCGGCCGCGCCATAATATTATGGCACCT
CTCCGGGGGAGGGAGCTGCCTGATTGATTGCCACATTGTGTATATCCACTTCCAGTCTCATTTGTGGGTTCTCTCTTGTA
CCTGAGGTAGCTA-GCCTGTCGACCGGCGCCGGTCGCGACATGGACATGGGGAG------------GGGGATGGGGATGG
GGATGGG------GAGGGGGATGGACAGGGAGGAGGGGCTCAACCTCAGCTTGTCACTGCAGCGGTCGCCTTCGTCGCCG
CCGAGGTTCCAGGCGGTGTTCGCCTGCTGCTACTGCCCCAGGAAGTTCAGGAGCTCTCAGGCTCTCGGCGGCCACCAGAA
CGCGCACAAAGTCCAGCGCAACCTGGCCAGGCGAGGCCGGGACGCCACCACCGCGCTGTCGTTGGCGGCAGCAGGAGAGC
AAGGTAAGGCCGCCGTCGATGACGACAGCGCTCCGCTGCGCCTAGCGGACCCTGACGCCGCCGACGCGTGGGGAGGAGGG
AGGGTCTACCCTCCTCATCGCCAGCAGGGCTCGGGAGCAGCCTCGTCCGGTGCGGCAAGAGGCAACGAAGAGCTTGCGGA
TGAGATGATTGACCTGTCCCTGAAGCTATGATCGCTC------GATGCAGGAGCATGGGCTAGCTAGCTTGGCCCGAGCG
GCTTGAAGTTCCCCTCTTCCATTTGTTTCATTTCTGCGCGTCATTTCTTGTGTGTGTTTCTGCTATCGCTTATCAGGTTA
ATTATTGTTGTTGGCTG-----------GGGCTTGAAACTGTACTCGATCTTTAGGTATCTCCATGCATGGAT--TATTA
CCTACACTGATCAGAAGCC-----TTTTATTGAACTGTTTGCAGTAATCTACTA--------------------------
--------------------------------------------------------GTTCTTGCC-------TGTAAATG
ACTAAATGTGCGGCCCTTGAATAACTTGTCTCTTTGATAAATCTAGAGTAATTTTGAACTCTTTACATTCCCAGTTCTGG
TTAACTAATTAAACTACCTAGCTGCCTCCTTGTTGCTTCAAGGGTTTATCATGATCAGTTCAACTCTTCCGGATTTACAT
GACCAATCGCCGTTGGTAGCGCCTTGTCCTAGGGAACTCCTGTATACAGAGTGAACAGATTACTAGCACTGCACA---CT
ATCTTGTATACTCATGACAGACATTGT---CTCAGATCAGACGCCTTAATTTTTGCGATTTACATCCTTGCCTGATATAA
TAATATATATG---------------------------------------------------------------------
-------------------------CTTAATTATAGGGGAAACGTGCTCATTCTTATGTTTTTTAATTGAGAGGCAATGC
GTTTGGCCGGTGCTTTCAGTATATTGATTTACATCCTTGCGTGATATAATAATATAATATGCCTAATTTTAGCGGAAATA
TACGTATTTTCTTTT----TTTTAATTAAGAGACAATTCATTTGGTCTGTGTTTTCAGTATATTGATTTTTTTTGTGCTT
AGATATAAGCTAGTACTGCCAGCGTTGATGGCCATTCTTTTTTGCTTTTGCTGTTTCCCATGATCCCATCGATCTTGGTA
TAGGTTAAACTGGAACACACTAGAATGCTAGAAA------
>chr2B_275
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--------------------------------------------------------ACATGTCCGAGGAGACGGGGACCA
TACATACGCATGCAATCATGCATATCTCTACATGGTTCGATCAGGGGCTTGGCTTTTGCTGGGCTATGTACCCAGTACAT
ACCAATGTTAGCTAGGTAGATTGATCTAGTGCATTCCTAATAGGACATCGGCCATGTCTGTGGCTATGAAAGCCTACCCG
TGTTGGCCCTTGGACCCGTGCTGCACCGCAACTGCATAGGAGCGCAGCCAGCACAGTGCCATGCACATACACATCGAACA
GTTCCGAGGTGAAAGCTAGCTATAAGGCGGAAACGGCACGGGGACATGTATATCAGTAGTAGATGTGTAGGGTGGTCATT
GATCGCGAGAGCACTGAGCAGGCAACAGGCCAGGAAAGAGAGGCGCGGATTAACCATCCTCGGCAAGCATGCATGCAGCA
GGA--------CGCAGCGTCTCAGGCAGTCAGGCTCAGGCGCCGGGCGTTGCGTTGAGTGCCGTCAGTTTCATAGCTGGT
TTTTACTGCAAAT-------------------------------------------------------------------
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----------------------------------------------------------------------ATGTGTCCAT
GGAGTGTGCACTGTTTGGCTTGGTCTCCGACAGGGCAGCCCCACATCGACCCCCGGCCTCGCCATAATATCATGGCACCT
CTCCGGGGGAGGGAGCTGCCTGATTGATTGCCACATTGTGGATATCCACTTCCAGTTTTATTTGTGGGTTCTCTCTTGTA
CCTGAGGTAGCTAAGCCTGTCGCCCGGCGCCGGTTGCGACATGGACATGGGGAGGGGGATGGGGATGGGGATGGGGATGG
GGATGGG------GAGGGGCATGGACAGGGAGGAGGGGCTCAACCTCAGCTTGTCACTGCAGCGGTCGCCTTCGTCGCCG
CCGAGATTCCAGGCGGTGTTCGCCTGCTGCTACTGCCCCAGGAAGTTCAGGAGCTCGCAGGCGCTCGGCGGCCACCAGAA
CGCGCACAAGGTCCAGCGCAACCTGGCCAGGCGAGGCCGGGACGCCACCACGGCGCTGTCGTTGGCGGCGGCGGGAGATC
AAGGTAAGGCCGTCGTCGATGACGACAGCGCTCCGCTGCGCCCAGCAGACCCCGACGCCGCCGACGCGTGGGGAGGTGGG
AGGGTCTACCCTCCTCATCGCCAGCAGGGCTCGGGAGCAGCCTCGTCCGGTGCGGCTAGAGGCAACGAAGAGCTTACGGA
TGAGATGATTGACCTGTCCCTGAAGCTATGATCGCTC------GATGAAGGAGCATGAGCTAGCTAGCTTGGCCCGAGCG
GCATGAAGTTCCCCTCTTCCATTTGTTTCATTTCTGCGCGTCATTTCTTGTGTGTTTTTCTGCTATCGCTTATCAGGTTA
ATTGTTGTTGTTGGCTGGTTTCTGCTATGGGCTTGAAACTGTACTCGATCTTCAGGTATCTCCATGCATGGAT--TGTTA
ACTACACTGATCAGAAGCC-----TTTTATGGAACTGTTTGCAGTAATCTACTACCCCCTCTGTAAATTTATATAAGAGC
ATTTAGATCACTATTTTAGTATTCTAAACAATCTTATATTAGTTTACAGAGGAGTAGTTCTTGCCTGTAAAGTGTAAATG
ACTAAATGTGTGGTCCTAGAATAACGTATCTC-TTGATAAATCTAGAGTAAGTTTGAACTCTTTATATTCCCAGTTCTGC
TTAACTAATTAAACTACCTAGCTGCCTCCTTGTTGCTTCAAGGGTTTATCATGATCAGTTTAATTCTTCCGGATTTACAT
GACCAATCGCCATTGGTATCGCCTTGTCCTAGGGAACTCCTGATTACATA------------------------------
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>SNPs
SSSSS------------SS-SSS-SSS-SSSS---------S---------S-----S--------------S-------
--------------------------SSS-----S-S--------------------------------SSSS-S--SSS
SSS--------------------------------------------S-------S-----S--------S---------
---------------------------S----------S---------SS---SSS-----S------------------
-------S------------------------------------------------------------------------
-S--------------------------------------------------------------S---------------
--------S-----------------------------------------------------------------------
-------S-----------------------------S------------------------------------------
----------------------------------------------------------------------------SS--
------------------------------------S-------------------------------------------
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-------SSSSSS---------------------S---------------------------------------------
--------------------------S-----------------------------------------------------
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----------------------------------------------------------------------------S---
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-------------------------------------SSSSSS-------------------------------------
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-------------------------S-----------------------------------------------SS-----
----S--------------SSSSS--------------------------------------------------------
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--S-------------------------------------------------S---------------------------
----------S------------------------------------S--------------------------------
-------S-----------S--------------------------S----S-SSS-S-----------S-----SSS--
-S--S-------S----S-----SSSSSSS---------------------S---S---------------S----SSSS
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---S---------------S--S---------------S--S-------------
--S---S----SS---S--------------------S-S-----------SSS-----------------------S--
-S--S----------SSSS--------S----S------------S-S--------------------------------
------S-S----------S-S--S---S--------------------------------SSSSSSS-------S----
----S-S---S-------------------S---SSSSSS
>forward_328
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------------------------------------------------------------------GGAGACAGGGACCA
TACATACC------------------------------------------------------------------------
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>reverse_4000
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-------------------------------------------------------------------------------C
CCTCGTCCCAAGTTGAGTC-------------------------------------------------------------
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