>input_sequence_79587
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-----------------------------------------ATGTCCCAGAGTTCATCGTCGGCGCGTCGCATCCGGGCA
CCCCCACCCCCGCTGCCCTTGATCATGTGCCCAAGGTGCACCGGGACAAGGACTAGGTGGTTTGTGTCCGGGATGGAACG
CAACCCGGGCATCCGTTTCTACAAGTGCCCGAACCAGTTGGTAAGCAACACGTACCACAC---------ATCCGCCAGAA
CCGTTCTTTTCCTGCTTTGGTTCATCGTTCAGTTTTGAATCATGGCAGGACGGAGGCCCTTGCGATTTTTGGCTGTGGGA
GGACCAGTACGCGTTCTACATAACTGGCGTTGGCATCAACCTCCTCATCGAGGCTGCCGGAGGTGGGAGCAACGTCATGT
TCGGGATGGGACGCGCCATGGAAGACATACGCATCGCAGCTAGGAACACCATGATGATCTGTTTGCTAATGCTGTTCGTG
GTGCTTGCCAAGGGAGCCGGCTGGCAGTAA--------------------------------------------------
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>chr2B_1_TraesCS2B01G614300
GAGTTAAAAAAATGTGCAAAAAATCACAGGCACAAGATCCATTGTTTATATTTTTCTTCCTTGTAAGGCCACTTGACAGG
GGAGTAAGAAACTTTACAAAAAATCACAGGCACGAGACCAATTTTTATGTTCTTCTTCCTCATAGGGTCACTTGGCAGTG
ACAGTCAAATCTTTGCAAAAAAAAGTCATAGACACAGGACCAACATATGCTACCCAAACTTGCCATTTCAAGTATATGCA
CTGGTATATACGGATATGAGAAAAACAGGCAAGCCGATGGTGACAGTCGGATAAGAGATAGACCATAGAGTGCAAAGGCA
GCTCCACTAACATGCTGATCATGGAGGGTCTGAGGAGCCACACAGTTATACCAACATGAAGTGGTACCAGAAAGTAGTGC
ACGTCTTTGCCGTGCCATTCTTCTATTTAGGTTTTGAGCTTACGGTGCGTGAATCTATTATCTCTATGCGACAACTCAAC
TTTCACCGGGTTGTGTTGTTATGTATGGCAGCATGGATGGAGAAATGCATCACTGCACGCAGCGGCAGATCGACGGTGCG
CAGCCCGTCGCGATGCGTGGCAAGCTTGCGCCCTACTTGGTGTATATAGGAAACGTGGAGAGTTATATGGCTCGTATTGA
TGTATTTAGGTGGACCGAGCTGACATTTGAGGCTGACACGCCGCTGCGCTGAGAACTGTACATCGCAGTCAGGAGGACAG
AAAGTTACCGTTGCATGATCAGCATCGCAGTTGATGTATTTTTGGATGTACCAAGCTGTCAGGCGAGACCGACACGACGC
TGCGCATATCACTGTACAGCGACGGCGAGAGGACGGAATGCTACCGTTGCGAGCTACACTGTATAACATAAACTTTTTTT
CTGGTTGGATGTATTTAAAGCCCATGCAAGCGTTCGACGGCACCCATCACATGCAACGCAGCCTCAATCAAACACGCTCA
AACATCTCAGT-TGCCCTCCACCCCCCGCCGCTGTGCCAAGATGTCCCAGAGTTCATCGTCGGCGCGTCGCATCCGGGCA
CCCCCACCCCCGCTGCCCTTGATCATGTGCCCAAGGTGCACCGGGACAAGGACTAGGTGGTTTGTGTCCGGGATGGAACG
CAACCCGGGCATCCGTTTCTACAAGTGCCCGAACCAGTTGGTAAGCAACACGTACCACAC---------ATCCGCCAGAA
CCGTTCTTTTCCTGCTTTGGTTCATCGTTCAGTTTTGAATCATGGCAGGACGGAGGCCCTTGCGATTTTTGGCTGTGGGA
GGACCAGTACGCGTTCTACATAACTGGCGTTGGCATCAACCTCCTCATCGAGGCTGCCGGAGGTGGGAGCAACGTCATGT
TCGGGATGGGACGCGCCATGGAAGACATACGCATCGCAGCTAGGAACACCATGATGATCTGTTTGCTAATGCTGTTCGTG
GTGCTTGCCAAGGGAGCCGGCTGGCAGTAAAGACCAGGGTGGCGCAG------CAATGAAGCGGAAACA----GCCCGAT
GATGGATTACAAACCCCCTACCCTGATTTATGTTTGGTAATGCTG-----------------------------------
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------------------------------------------TTTGTAGTACGTATG-AATCCAGAGTGCGGTGGCGTAC
CCCCGCAGGGTAACCGTGTATTAATTAA--TTT-----------------------------------------------
-------------------CCTATTAGCTAATGT-AAACCTTGGCGACGTGTACCACACGCAACAGACCTGGACGATTGT
TTCTGCACCTACATCAAGCCAGGCAGAGACATAAATTGATATGCTCGCACGGTCAAAAGCGT-ACCCAACAGCGGTGTGC
GTGTGTCAGTTGTGACAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGTCAGTGCCTCCAGGCGACGGAGAAGGCCGGTG-TCGCCGCACAGCGTGGTGAGTTCTGATCCACA--
TCTCAGGTCGCCGGCACATCAATCAAAATCTTGCTGAAATACTCACCCTTCCCTGCACCCCACCCACCCGCGCCCCCTGT
AGGTGTTCTCTCTCTCCTT-----------------------------------------CCACCGGCCATGGAAGGAGA
GAGAGAGCAGCCGATCGAAGAAGGAGAAGCAGCAGCTCCGTCGGGATCAACAAGCAGGTCAACTAAACACACATCTAGGA
TAGCTATTCAGAAATTAATAGAGGTGGTAGCTGCATTGTCAGATTACAAAAGATTCCTAGTTGAGGAGATTGGATTTGAG
GGTGTACTACGTATCCCCATGATCCAGAAAATCAATCTGAAGTTTAGCAAGTTCCTAATGACCAAGGTGGTTGTGGAAAA
GCATTGCATCATACTGAGAGATGGCGGAACGC
>chr5A_764
GGATGCA-------------------------------------------------------------------------
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---------------------------------------------------CAAGCTGTCAGAAGAGTCTGACAGGCAAC
TGCGCGTGTCGCTGTACGCCGCAGGCGAGAGGACGAAATACTAACGTTGCAAGCGACACTGTATAACGTAAACTTCGTTG
CTGGTTGGATGTATTTATAGCCCATGCAAGCTTTTGGCAGCAATCATCACATGCGACGGCAC--CATTCAAACACGCACA
AACATCTATCGTTGCCTCCCCCCTCCCGCCGCTGTGCCAAGATGTCCCAGAGTTCCTCGGCGGCGAGACGCACCCGGGCA
GTTCCACCACCGCTGCCATTGATCATGTGCCCAGCGTGCACGGGGACGAGGACCAGGTGGTTTGTGTCCGGGACGGACCG
TAACCCGGGCATCCGTTTCTACAAGTGCCCGAACCAGGCAGTAAGTAC---------CACGGCCCACACATCCATCAGGA
GTTTGCAGTTCTTCGTTTTGTTTAGCCGTCAGTTCTGAACCATGGCAGGACGGAGGCCCTTGCGATTTTTGGCTGTGGGA
GGACCAGTACGCGTTCTACATCATCGGGGTTGGCATCAAACTCCTCATAGAGGCTGCCGGAGGCGGAAGCAACATCATGT
TCGGGATGGGCCGCGCCATGGACGACATACGCATCGCAGCTAGGAACACGATGATGATATGCATGCTAATGCTTTTCGTC
ATGCTTTCGAAGGCGGCCGGCTGGCAGTAAATACCACTGTGGTGCCCCCCCCCTCACGTGTGTCGAAATCTTTGCCTGAT
GAAGGGATTTAGAAATCCTGCCGCTACAGTTTAAATTA------------------------------------------
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---------------------------------------TTACCTGTAGCACTTATGTTTTCCAGAGCGCGGGGCAGTCC
GCCCATGTGTAATCTTGTTCGTTAATTAGAATTCATCAA-----------------------------------------
-----------------------GCAGGTAAAGTAAACACGGGGGGACGTGTACCGCGCTCCCACCCTAGAC--------
-------------------------GAGACATAAATTGCAACGACCGCACGGTCAAAAAACAGACCCAACAGGTCGTACG
TGGGGTCAGCTGCTTGAGCGGTCAAACTCAATCCACCCCCACCCACGCCCTGCCGTAAATAATCAAAACTCTGTACCCAC
ACGCTGGGCCACCCCTCGCATGCGCACATACACTGCAGATCGACGGCAGTCTCCATCACTAGAACAGAGCAATCGAGGAT
CTC-----------------------------------------------------------------------------
------------GTCGGTGCCTTCAGACGACGGAGCAGGCTGGTATTCGCCGCGCAGCGAGGTGAGATCTGAACCACAGC
TCTCATGCCGGCGGCGTCTCAATCAAATTTTTGCTGAAACATC--------------CCCCCTGCCCCCCGCCCCCCTGC
AGGTTTTCCCACAGCTAGATGGAAGAAGAAGAACAACATCTCAGGCGGGAGATACAGACCCCGCCCACCATGGAAAGAGA
TGGAGAGCAGCTGGTAGGAGAAGGAGAAGCAGCAGCTCCGTCGGGATCAACAAGCAGTTCAACTAAACACACACCTAGGA
TAGCTATTCAGAAAGTAATAGAGGTGGTAGCCGGACTGTCAGATTACAAAAGATTCCTAGTTGAGGAGATTGGATTTGAG
GGTGTACTGCGTATTCCCATGATCCAGAAAATCAATCTGAAGTTTAGCAAGTTCCTCATGACAAAGGTGGATGTGGAAGA
GCACTGCATCATCCTGTGAGATGGCGGAAC--
>chr4B_764
GGATGCA-------------------------------------------------------------------------
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---------------------------------------------------CAAGCTGTCAGAAGAGTCTGACAGGCAAC
TGCGCGTGTCGCTGTACGCCGCAGGCGAGAGGACGAAATACTAACGTTGCAAGCGACACTGTATAACGTAAACTTCGTTG
CTGGTTGGATGTATTTATAGCCCATGCAAGCTTTTGGCAGCAATCATCACATGCGACGGCAC--CATTCAAACACGCACA
AACATCTATCGTTGCCTCCCCCCTCCCGCCGCTGTGCCAAGATGTCCCAGAGTTCCTCGGCGGCGAGACGCACCCGGGCA
GTTCCACCACCGCTGCCATTGATCATGTGCCCAGCGTGCACGGGGACGAGGACCAGGTGGTTCGTGTCCGAGACGGACCG
TAACCCAGGCATCCGTTTCTACAAGTGCCCGAACCAGGCAGTAAGTAC---------CACGGCCCACACATCCATTAGGA
GTTTGCAGTTCTTCGTTTTGTTTAGCCGTCAGTTCTGAACCATGGCAGGACGGAGGCCCTTGCGATTTTTGGCTGTGGGA
GGACCAGTACGCGTTCTACATCATCGGGGTTGGCATCAACCTCCTCATAGAGGCTGCCGGAGGCGGAAGCAACATCATGT
TCGGGATGGGCCGCGCCATGGACGACATATGCATCGCAGCTAGGAACACGATGATGATATGCATGCTAATGCTTTTCGTC
ATGCTTTGGAAGGCGGCCGGCTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACCTGTAGCACTTATGTTTTCCAGAGCGCGGGGCAGTCC
GCCCATGTGTAATCTTGTTCGTTAATTAGAATTCATCAAGCAGGTAAAGTAAACTCGGGGGGGACGTGTATGTGTAACCT
TGTAGTTAATTAGAATTCATCAAGCAGGTAAAGTAAACACGGGGGGACGTGTACCGCGCTCCCACCCTAGAC--------
-------------------------CAGACATAAATTGCAACGACCGCACGGTCAAAAAACAGACCCAACAGGTCGTACG
TGGGGTCAGCTGCTTGAGCGGTCGAACTCAATCCACCCCCACCCACGCCCTGCCGTAAATAATCAAAACTCTGTACCCAC
ACGCTGGGCCACCCCTCGCATGCGCACATACACTGCAGATCGACGGCAGTCTCCATCACTAGAACAGAGCAATCGAGGAT
CTC-----------------------------------------------------------------------------
------------GTCGGTGCCTTCAGACGACGGAGCAGGCCGGTATTCCCCGCGCAGCGAGGTGAGATCTGAACCACAGC
TCTCATGCCGGCGGCGTCTCAATCAAATTTTTGCTGAAACATC--------------CCCCCTGCCCCCCGCCCCCCTGC
AGGTTTTCCCACAGCTAGATGGAAGAAGAAGAACAACATCTCAGGCGGGAGATACAGACCCCGCCCACCATGGAAAGAGA
TGGAGAGCAGCTGGTAGGAGAAGGAGAAGCAGCAGCTCCGTCGGGATCAACAAGCAGTTCAACTAAACACACACCTAGGA
TAGCTATTCAGAAAGTAATAGAGGTGGTAGCCGGACTGTCAGATTACAAAAGATTCCTAGTTGAGGAGATTGGATTTGAG
GGTGTACTGCGTATTCCCATGATCCAGAAAATCAATCTGAAGTTTAGCAAGTTCCTCATGACAAAGGTGGATGTGGAAGA
GCACTGCATCATCCTGTGAGATGGCGGAAC--
>chr7B_895
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--------------TTAAATACCATG-AAGCGTTGGACATCACCCATCACATGCAGCGACCTC---ATCAAACACGCACA
AACAGCTCTCTCTGCCCTCCACCACTCGCCGCTGTGCCAAGATGTCACAGAGTTCATCGTCGGCGCGACGCATCCGGGCA
CCTCCTCCCCCGCT-CCATTGATCATGTGCCCAAGGTGCACCGGGACGAGGACCGGGTGGTTTGTGTCCGGGACGGAACG
TAACCCGGGCATCCGGTTCTACAAGTGTCTGAACTAGACAGTAAGTAT---------CAC---------ATCCACCAGAA
GATTTCTTTTCCTGGTTTTGTTCATCCTTCAGTTTTGAATCATGGCAGGACGGAGGCCCTTGCAATTTTTGGTTGTGGGA
CGACCAGTACGCGTTCCACATCACCGGGGTTGGCATCAACCTCCTCATCGAGGCTGTTGGAGGTGGGAGCAACGTCATGT
TCAGGATGGGCCGCGCCATGGACGACATACGCATCGCAGCTAGGAACACCATGATGATCTGTTTGGTAATGCTTTTCGTG
CTGCTTGCCAAGGCAGCCGACGGGCAGTAAAGACCAGGGTGGCGTACCACCACCAACGAAGCCGAGACA----GCCTGAT
GAAGGAATAAAAATTCCCAGTCCTGACAGTATGGTTTA------------------------------------------
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---------------------------------------TGATTTGTAGTACGCATG-TATCCAGAGTGCCATGTAGACC
CACCATTTTTAATAGTGTCGTTAAATAACGTTT-----------------------------------------------
-------------------TCAATTAGTTAATGAAAAACCTGGGCAACGTGTACCGCACGCA------------------
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>SNPs
-SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------SS---S-S----S-SSS-
-----S-S--S------SS--SS------------S---S---S------S---S------------S-------SS--S
----------------------------------S---S-------------------SSS--S-------------S--
--------SS-------------S-------------------------------------------S------------
--S--------------S-----------------------------S-----S-------------------S------
S------------------------------------SSS-----S-SSSSSSSSSS----------------S------
SSS-----------S---S-------S-----------------------------------------------------
---------------------S--S--S----------------------------------------------------
----------S-----------S--------------------------------------------------S------
S------------S--------------------------------S---------S-----S-------------S---
--S---S--S---SS----S------SSSS-SSS-SSSSSSSSSS-----------------------------------
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----------------------------------------------------------S---------------SS--S-
----SSSS-SS-S-SSSS-S----S-------------------------------------------------------
-------------------S-S-----S-------------S-------------S------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------------SS-S-SS-------------SSSS----------SSSSSSSS
SS-S-----S--SSSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---S------S---S--------S--------S--------S-----S------S-----S-------
-----S-S--S----SSS---------S-S---------S-SSSSSSSSSSSSSSSS----SSS-S---SSS-------S
----S---S-S-SSSSSSS-------------------------------------------S--SS--------S----
SS---------S-S-S-S---------------------------------------S---------------S------
--------------S----------------S-S-S--------------------------------------------
--------S-----S-----------------------------------------S-----S-------S-------S-
---S--------S---S-------------SS
>forward_604
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------------------------CTTGCGCCCTACTTGGTGTA------------------------------------
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>reverse_2077
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----------------------------------------------------------------------------GTGC
GTGTGTCAGTTGTGAC----------------------------------------------------------------
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