>input_sequence_79544
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---------------------------------------------------ATGGACTTCTGCCCGGCGTGCGGGATGCT
GCTGCAGATCCAGCCGGCCACCGGCGGCCACCGCCTGCGCCTCTTCTGCCCCACCTGCCCGTACGTCTGCCCCATCAAAA
ACAAGGTCTGCCCTCAAACCCAATTCCGCCTCCTCGTTCCCTTGCGTCGTTTTACTCTGATGCCCCCGATCGAGTTGTGT
TGACGTGCTTGTTGGTGTGACCCTCGCTTGGCGCAGATCGTGAAGAAGGCGAGGCTGGTCAAGAGGGAGGTGGAGTCCGC
GGAATCTGCCCCCAAGACTGAGGGTGAGCCCAAGGAATCGGCCCCCAAGACTGACGGTGAGCCCAAGGCCGATGGTCAGC
TCAAGCAATCTGCCCCCAAGACTGAGGGTGAGCTCTTCACCCTTCTCTTTTGCTTAGCTACTGC----------------
---CTACTGGAATAGTCGATTGTCCTCACCGCTCAACTGTGTGCATAACTAG----------------------------
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>chr6A_1_TraesCS6A01G255000
CGCCCGGACGCACTCGGGCCGCCCCATATCTTCACTACATTTGGGTTAGATATGAGGCGCGTCAGACATCCCAATCGTTT
GAGAGGCCGGTCTGAGACGCCCGGGTTATTCTTTTTGTTACCGATCAGTGATTGGTCTGGCCGTTCGGGCGTTTGAGACC
GATTTAAGGTGACTGGTTGTAGACGCTCTTATAAACTAGACCAACCAAACAAAAGAACGATTCTCTCTTGGCATGGCATC
TTTTGAGTAATATATTCACATGTGAGAACTCTTCTCCAATGATTTCTTAGAAAAAAATGCGGGATAGGTTGAAATTTTGG
TCATCCTATCCTATGAAATGATTCATCTCTTGCATTGCGGACTTTAGAATTTCGCATTAATTAGAAGTGTTGGGCGCGTT
TCGTTGTGCCGTTGGTGTTGCTAAGATTCCATAAAGATAAGAATTGGTTTGACGCACGGGTAAGATGATGAAGTGCGTTC
TTTTTTTTATAATATGGTGTTTTAGTGGGATTTTCATGTCAGTTCGTGATATCCGCTAATCAACAAAAACACGTATTATG
CTGGTTGATGTCGATTAATTTAAGAAATTATTGATCCACTCAAAATTGTGAATCAAATCTAAAATTGATACCTCATCTCA
ATGAGAGGGCTCGTTGAGAAATAGTTGACGAGGTCAAAATTGTAAACCAAATCTAAAGTCGAACATCTCAATTGAACGAG
AGGGCTTTAAAATAAGGGTGCACGGTTTTTTTTTTTGAGCAAGAATAAGGGAGCACGGTGAATTCCCATAATTCCATGTA
CAAAATATGTGGGCCTCGAGGTCAGACCGCCGTTCACACGGTCGGCCCAATACTAATGGGCTGGAAACACCCACCCTGGT
C----ATAGGGTTTTAGTGGGGTTTCACCCCACCCTGGAAACACCCCTCAAAAAAGAAAAG-------AAAAACTCATCG
CAGAGCCGCCGCCGACCGTAGCACAGCGGCAGAGAAGTGCGGCAAGCGGCCATGGACTTCTGCCCGGCGTGCGGGATGCT
GCTGCAGATCCAGCCGGCCACCGGCGGCCACCGCCTGCGCCTCTTCTGCCCCACCTGCCCGTACGTCTGCCCCATCAAAA
ACAAGGTCTGCCCTCAAACCCAATTCCGCCTCCTCGTTCCCTTGCGTCGTTTTACTCTGATGCCCCCGATCGAGTTGTGT
TGACGTGCTTGTTGGTGTGACCCTCGCTTGGCGCAGATCGTGAAGAAGGCGAGGCTGGTCAAGAGGGAGGTGGAGTCCGC
GGAATCTGCCCCCAAGACTGAGGGTGAGCCCAAGGAATCGGCCCCCAAGACTGACGGTGAGCCCAAGGCCGATGGTCAGC
TCAAGCAATCTGCCCCCAAGACTGAGGGTGAGCTCTTCACCCTTCTCTTTTGCTTAGCTACTGC----------------
---CTACTGGAATAGTCGATTGTCCTCACCGCTCAACTGTGTGCATAACTAGGGATTATCAATTGTTGTTCTTTCTTCTG
GTG---------TCAGAAAAAGGAAGACGGATTACGATTTTTTTTTTCTTTTTGTTGCAACCCTGGAAATTTCTGTTGTC
AATAGAGTTGCTCGTTCTGGCACCAATAAGGGGATTTTC-TTCACATCTTCCTTTCGGTGAATTGTACTATATTGAAATA
TATTACCCGA-------------AG----------TTGTTTTGTAATGCAAATGTAGCTTAGGATTTTTCATTAGAAATC
TTTTTCTTTACAGTTTTTTTCTTAAAGTTCACACCCTAGCTTATTTCGAAGAATGACACTTGC----------CCACCCT
GTGTCACCTTTTTCTGCGTGGTGGTGCCATGCGCCCATGCCTAAGGCAAATCTACACTTGTTATTAGGAACAAAGTTTTA
AAAGCGTTAGGCGTTAATTGTGCGTTTTGCCACCGCCTCGTGCTTTTCTAACAAAAGCGCACGCCTAAGCGCTAGGCGTT
TTGCTATCGCCTAGAGCCTAGGCATGCTTAAGCGCCTTTTTCTAACCATGTAGTACATTGAGCTGCAGTCACCTAACTTG
GGTCATCGAACTCCCAAACTGCAGGTCTAGGTCGTTAAACTTCTTGAGATGTTTCTCTCTAGGTAATTGGTATGGCATCC
TTTGTGTGACAGATCAAATGACATGGCATGTTCACTGATGCCACTGTGCTTGGTTAGTACCTGATGACGGGCATGAGCAC
TGTAATTTGCCCTCAGCCTCCCTAGAGTCTTGACCTTATATAAATTTCTGCATGTCAGGGACCCAATGAGAGCAAGGAAT
TAAGGCCAGCTAAGTATATTGCCATAATAGTGACTTTGCTAATGGATGGAAACTACATAGGCTGCCCAAACTAGTTGACA
CCTAGAGTGATCCACTTAAAACTAGTTTAGTAGCCTAGATAGGCAGTTTGAGAGTACAGTGTCCTACTTGAACCTGCCGG
TCAAGTTTTGGGACCAGTAATATGATTTACTCGTAATTTTAATGCCTTTGTGCTC
>chr6B_656
GAGAGAG-------------------------------------------------------------------------
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---------------------TAGTTGACGAGGTCAAAATTGTAAACCAAATGTAAAGTTGAACACCTTAATTGGACGAG
AGGGCTTTAA---------------------------------AATAAGGGAGCACAGTAAATTCCCATAATTCCATGTA
CAATATATGTGGGCCTCAACGTC-GACCGCCGTTCACACGGTCGGCCCAATACT-------------------CCCTGGT
C----ATAGGGTTTTAGTGGGGTTTCACTTATCGCAGAGCCTTGT-CTCAAAGAAGAAAAAGAAAAAAAGAAACTCATCG
CAGAGCCGCCGCCGACCGTAGCACAGCGGCAGAGAAGTGCGGCAAGCGGCCATGGACTTCTGCCCGGCGTGCGGGATGCT
GCTGCAGATCCAGCCGGCCACCGGCGGCCACCGCCTGCGCCTCTTCTGCCCCACCTGCCCGTACGTCTGCCCCATCAAAA
ACAAGGTCTGCCCTCAAACCCAATTCCGCCTCCTCGTTCCCTTGCGTCGTTTTACTCTGGTGCCT-CGGTCGAGTTGTGT
TGAC--GCTTGTTGGTGTGACCCTCGCTTGGCGCAGATCGTGAAGAAGGCGAGGCTGGTCAAGAGGGAGGTGGAGTCCGC
GGAATCTGCCCCCAAGACTGACGGTGAGCCCAAGGAATCGGTCCCCAAGACTGACGGTGAGCCCAAGGCCGAGGGTCAGC
TCAAGCAATCTGCCCCCAAGACTGAGGGTGAGCTCTTCACCC--------------------------TTCTCTTTTGCT
TAGCTATTGGGATAATCGATTGTCCGCACCGCTCAACTGTGTGCATAACTAGGGATTATCAATTGTTGTTCTTTCTTCCG
GTGTTTATATATTCAGAAAAAGGAAGATGAATTACGATTTTTCTTTTCTTTTTGTTGCAACCATGGAAAATTTTGTTGTC
AATAGAGTTGCTCGTTCTGGCACCAATAAGGAGATTTTTTTTCACATCTTCCTTTCGGTGAATTGCACTATACTGAAATA
TTACATTACCCAAAGTGCAGGGTAG----------TTGTTTTGTAATGCAAATGTAGCTTAGGATTTTTCATTAGAAATC
TTTTTCTGTGCA-TTTTTTTCTTAAAGTTCACACCCTAGCTTATTTCGAAGAATGACACTTGCTTACCAGCTACCACCCC
GTGTCACCTTTTTCTGCGTGGTGGTGCCAT--------GCCTAAGGAAAATCTACACTTGTTATTAGGAACAAAGTTTAA
AAAGCGCTAGGCGTTAATTATGTGTTTTGCCACCGCCTTGTGCTTTTCTAACAAAAGCGCACA-TTAAGCGCTAGGGGTT
TTGCTATCACCTAGAGCCTAGG----CTTAAGCGCCTTTTTCTAACCATGTAGTACATTGAGCTGCGGTCACCTAACTTG
GGTCATTGAACTCCCAAACTGCAGGTCTGGGTTGTTAAACTTCTTGAGATGTTTCTCTCTAGGTATGG---ATGGCATCC
TTTGTGTGACAGATCAAATGACATGGCATGTTGACTCATGCCACTGTGCTTGGTTAGTACCTGATGACGGGCATGGCCAC
TGTAATTTGCACTCAGCCACCCTCAGTCTTCATCATGAGAGTGATTTTTGTTTCCTTTCGTATAATGGATTGCTGCGCCA
TGCCTTGATGGCACAAGTCAATGTGCCACGCCAACCTGGTTGACACCTAGAGTGATCCACCTT----AAACTAGTTGACA
CCTAGAGCGATCCACTTAAA-CTGGTTTAGTGGCCTAGATAGGCAGTTTGAGAGTTCAGTGTCCTACTTGAACCTGCCGG
TCAAGTTTTGGGACCAGTAATATAATTTACTCGTAAGTTTAATGCCTTTGTGCTC
>chr6D_764
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-------------------------------------------AATAAGGGAGCACAGTGAATTCCCATAATTCCATGTA
CAAAATATGTGGGCCTCAACTTC-GACCGCCGTTCACACGGTCGGCCCAATACTAATGGGCTGGAAACACCCACCCTGGT
CATAGATAGGGTTTTAGTGGGGTTTCACTCATCGCAGAGCCTTGT-CTCAATC---AAAGAGAGAAAAAAAAACTCATCG
CAGAGCCGCCGACGACCGTAGCACAGCGGCAGAGAAGTGCGGCAAGCGGCCATGGACTTCTGCCCGGCGTGCGGGATGCT
GCTGCAGATCCAGCCGGCCACCGGCGGCCACCGCCTGCGCCTCTTCTGCCCCACCTGCCCGTACGTCTGCCCCATCAAAA
ACAAGGTCTGCCCTCAAACCCAATTCCGCTTCCTCGTCCCTC-GCGTCTTTTTACTCTGGTGCCT-CGGTCGAGTTGTGT
TGACGTGCTTGTTGGTGTGACCCTCGCTTGGCGCAGATCGTGAAGAAGGCGAGGCTGGTCAAGAGGGAGGTGGAGTCCGC
GGAATCTGCCCCCAAGACTGACGGTGAGCCCAAGGAATCGGCCCCCAAGACTGACGGCGAGCCCAAGGCCGATGGTCAGC
TCAAGCAATCTGCCCCCAAGACTGAGGGTGAGCTCTTCACCCTTCTCTTTTGCTTTTTTTTGCGGGGTTTCTCTTTTGCT
TAGCTATTGGGATAATCGATTGTCCTCACCGCTCAACTGTGTGCATAACTAGGGATTATCAATTGTTGTTCTTTCTTCCG
GCGTTTATAT--TCAGAAAAAGAAAGAAGGGCTATGATTTTTTTTTCCTTTTTGTTGCAACCCTGAAATTTTTTGTTGTC
AATAGAGTTGCTCGTTCTGACACCAATAAGGAGATTTTC-TTCACATCTTCCTTTCGGTGAATTGCACTATATTGAAATA
TATTACCCGA-------------AGTGCAGTGTAGTTGTTTTGTAATGCAAATGTAGCTTAGGATTTTTCATTAGTAATC
TTTTTCTTTACAGTTTTTTTCTTAAAGTTCACACCCTAGCTTATTTCTAAGAATGACACTTGCTTACCAGCCACCACCCT
GTGTCACCTTTTTCTGCGTGGTGGTGCCAT--------GCCTAAGGTAAATCTACACTTGTTATTAGGAACAAAGTTTAA
AAAGCGGTAGGCGTTAATTGTGCGTTTTGCCACCGCCTTGTGCTTTTCTAACAAAAGCGCATGCTTAAGTGCTAGGTGTT
TTGC-ATCTCCTAGAGCCTAGGCGTGCTTAAGCGCCTTTTTCTAACCATGTAGTACATTGAGCTGCGGTCACCTAACTTG
GATTATCGAACTCCCAAACTGCAGGTCTAGGTCGTTAAACTTCTTGAGATGTTTCTCTCTAGGTAATTGGTATGGCATCC
TTTGTGTGACAGATCAAATGACATGGCATGTTCACTCATGCCACTATGCTTGGTTAGTACCTGATGACGGGCCTGGCCAC
TGTAATTTGCACTCAGCCTCCCTAGAGTCTTGGCCTTATATAAATTTCTGCATGTCAGGGACCCAATGAGAGCAAGGAAT
TAAGGCCAGCTAAGTATATTGCGATAATAGTGACTTTGCTAATGGATGGAAACTACATAGGTTG-CCAAACTAGTTGACA
CCTAGAGTGATCCACTTAAAACTAGTTTAGTGGCCTAGATAGGCAGTTTGAGAGTTCAGTGTCCTACTTGAACCTGCCGG
TCAAGTTTTGGGACCA-TAATATGATTTACTCGTAAGTTTAATGCCTTTGTGCTC
>SNPs
SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-------------------------------S------S-----S--S-----S-----
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-----------------------
-----------------S-S---S--------------------------------------------------------
----------------------------S-SS-S-S-SSSSSSSSS------S-------S-------------------
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-----------------------------------------------------------S----SS--S-----------
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---------------------S----------------------------------------------------------
-------------------------------------------------------SSS-SSSSS----------------
------S---S---S---------------------------------------------------------------S-
---------------------------S--------------------------------------------S-------
-------------------------------S---------------------------------S--------------
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------------------------------SSSSSSSS--------S-------------------------------S-
------S-------------------------------S-------------------------S-----------S---
--------S--------------S------------------------------------------S-------------
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------------------------------------S--------------------------------------SS---
----------S---------------------S-----------------------------------------------
----------------------S--------------------------------------S--S---------------
-------------------------------S-----------------------S------------------------
------------------------------------S------------------
>forward_68
------------------------------------------------GATATGAGGCGCGTCAGACA------------
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>reverse_1186
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-----------------------------------------------------------------CCGATCGAGTTGTGT
TGACG---------------------------------------------------------------------------
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>forward_70
--------------------------------------------------TATGAGGCGCGTCAGACATC----------
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>reverse_1455
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--------------GTCGATTGTCCTCACCGCTC----------------------------------------------
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>forward_88
--------------------------------------------------------------------TCCCAATCGTTT
GAGAGGCC------------------------------------------------------------------------
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>reverse_1519
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------------------------------------------------------------------------------TG
GTGTCAGAAAAAGGAAGACG------------------------------------------------------------
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