>input_sequence_79541
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----ATGTCAACCTGCACGTTTGCGACCTCCTGCGTGCTCTTGGGCAATGCTCGGACAACCGATGTCCCCCAGAAAGCGC
TCAAGAGCCGTGTGAGCTTCCTTGGCCGAGGCGCGCTGCAGCTGCCGAGCCTGAGGTCCTCCTCAAAG---AAGAAGCTG
GATGTCTCAGCGGCGGCCACGTACAAGGTGAAGCTGGTGACCCCGGAAGGGGAGGAGCACGAGTTTGAGGCGCCGGACGA
CGCCTACATCCTGGACTCGGCGGAGACGGCGGGGGTGGAGCTGCCCTACTCGTGCCGGGCGGGGGCATGCTCGACCTGCG
CGGGCAAGATCGAGGCGGGCGCGGTGGACCAGTCGGACGGGTCGTTCCTGGACGACGCGCAGCAGGAGGAGGGCTACGTG
CTGACGTGCGTCGCCTACCCCAAGTCGGACTGCGTCATCCACACCCACAAGGAGGGCGACCTGTATTAG-----------
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>chr5D_1_TraesCS5D01G516100
CAGTGCTTGCCTTTCTCATATTGCTCCGGAGAGTGACTCCGGCCTTGTACTGGAGGGGGGTGCTGGCTTGTCCTCACTTT
T--CCCTCCTTGGTTAACATACCGTTGGCTTATATCAGCATCCCGACTCGTGTTTGGTCTTAAAACCCGCTGTTTGTCAC
GCAAATAATGTGTGTGTGTGTG----------------------------TGTGTGATGTTCCAGTGTTAGTGTTGGATA
GCATGTTGGACGATGCAGTCCGA-CACAATAGGCGCACAATAAGCATGACCTCTTACGTTTTTCTTCTCCTATTATT---
--AGAGTTTGGACA--------------AACATGAAATTGTTTGCTCTATTAAGCAGTTCATGTTTTGCGTGCTGTGTCC
TGGAGCTTCGAGTGAAGAGCAGGGTTGCAATGCCTGCCTTTCTCATACTGCTCCAAAAGTAATTATGGCCTTCTCACCAA
GG-GAGTGGATGGCCTGTCCCCATTTCTCTTTGTTGGTAAAGATACCGTTGGCATATATCAGCACAACATTTTCATACAA
AATTAAGAAGGTTGATTTAGGTCCAGGCGGGTATCTTTTTTTCACAATAGAGCCTTTCTGTTTCCTGTGTCCCTGGTCTG
GGTGTCAATCGTTTATCATGAAATTAGTTGTTATCTTGAGCAAGCAACAAAGGGGCGTTGATGTTGCGTATTTTGTTCTG
GAGCTTCGAGTGAAGGGCAGGAGTGCAATGCCTGCCTTTCTCATACTGCTCC----------------------------
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-----------------------AGAGAGTAACCGTGGCCTTCTCATGGAGAGAATGATGGTTTATCCCCA-TTTTTTTC
CTTGGTAAAGATACCATCGCCGTATATCACTAGCTCTTTGTGTTTGACCTTAATCTGTTCATGTGGAAAACAATGGGTGC
TTTTCCAGTGCTAGTGGTAGGATAGCATCCGACCCAATGCATAACTTGTTGTGTGCTGAATAATTGGTTGCATTAGATAG
TGAGAATTTCAGTTCTAT-TTTTTGTTACCTTT--------------------ACTGACTTGATTCTTTGGGTCAGGTTT
CAAGATGTCAACCTGCACGTTTGCGACCTCCTGCGTGCTCTTGGGCAATGCTCGGACAACCGATGTCCCCCAGAAAGCGC
TCAAGAGCCGTGTGAGCTTCCTTGGCCGAGGCGCGCTGCAGCTGCCGAGCCTGAGGTCCTCCTCAAAG---AAGAAGCTG
GATGTCTCAGCGGCGGCCACGTACAAGGTGAAGCTGGTGACCCCGGAAGGGGAGGAGCACGAGTTTGAGGCGCCGGACGA
CGCCTACATCCTGGACTCGGCGGAGACGGCGGGGGTGGAGCTGCCCTACTCGTGCCGGGCGGGGGCATGCTCGACCTGCG
CGGGCAAGATCGAGGCGGGCGCGGTGGACCAGTCGGACGGGTCGTTCCTGGACGACGCGCAGCAGGAGGAGGGCTACGTG
CTGACGTGCGTCGCCTACCCCAAGTCGGACTGCGTCATCCACACCCACAAGGAGGGCGACCTGTATTAGG---GGTCTCA
CCTCTGGCTCCCCCGGT------TGTGTTGAGTAGAACCTTGATGCTCTGTAAAACCAATCTTGATGGTTGTTTATCCCC
TGCCTGCCTGCCTGTGTGCTTTGGTCGTTAGTCGGATTGTTGGGTGAACCCACCCATGGAGATGGAGATGGAGATGGAGA
TGGAGGAGAATGAGAAATAAGGGACTAAAATGCAGTTTCATGGTTTTTGCGTGGTCGTCTTTGCGCCGTTGGTTTTCCGC
CGGTTCGTTTGACATGCTTGCTGTTCGTTTGTGTGCCTGCCTCTTGGTTGCTTCCTAGCTTTTGAAACAAAACTGGTTTG
CTCGTGTAGCTGCTGATGTCTAGTAGTGTTGGTTAATCTGAATGCCGCATCTCAAGATGTGTCTGCCAAGAATGGCATCT
CAGCATGTGAAAGTGGTTGGGGATGCTGATGATCCTCCTTTTGTTTTTGTTTCTTGGACGGCGTTTCATTGGTAGTCCAG
GTTTCTTTTTTTGAATTCTGGCTGTCTCAACCATTGACGCATTCAGTTTAGTTTGGTGGCCGGCCGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGATCCTCCGCTTGATACCTTCTCTCTTGTTCCTTGGCTCTGACTGAGAGGGCGAGCC
AGTTCTTCATTGGAGGCACCTCTCCTAGTCTCTATCCCAAGTTCCACAGTCCTTTTTGTGTTTGTTCTTGGGTGTTCACT
CGGTTTCCCCTAATTAAATGGGCGCTGTTCGGTTTTTGCGTCCGATTTTCCTAATTATACATTGGACAATATTTCTTTCT
TTTAGGGAAAGTCACTATGGCTAATTTTATTAATCATCAGATAACGGATACATCAGACTAAGATAATAAAACTCAAGAGG
CTCATCAACCCAAATCAAACACGTGGTTGCGGCATAGCCTCGCTACAATTACAGCAACTCCGAGAGAACCAAGTTGCTAG
GACACAAATATCAACATAATAATAAGGCATGAGCTACA
>chr5B_4
---TGCTTGCCTTTCTCATATCGCTCCGGAGAGTGATTCCGGCCTTGTACTGGAGGGGGCTGCTGGCTTGTCCATGGTTT
CCCCCCTCCTTGGTGAAGATACCGTTGGCTTATATCAGCATCCCGATGCGTGTTTGGCATTGAAAGCCGCTGTTTGTCAC
GCAAATCATGTGTGTGTGTGTGTAGGGGTGACACGCAAATAATGTGTGTCTGTGTGATGTTCCAGTGCTAGTGTTGGATG
GCATGTTGGGATGATGCGGTACAGCACAATAGGCGCACAATAAGCATGACTTCTTATGTTTGT-TTTTCCTATTATTGCT
AGG--GTTTGGCTATTTCTTTTTATTAGAACATGAAATTGGTTGCTCTATTGAGCAACTCATGTTTTGCGTGCTGTGTCC
TGGAGCTTCGAGTGAAGAGCAGGGTTGCAATGCCTGCCTTTCTCATATTGCTCCAAAAGTAACTATGGCCTTCTCATGAA
-G-GAGTGGATGGCCTGTCCCCATTTCTCTTTCTTGGTAAATATACCGCTGGCATATATCAGCACAACATTTTCATACAA
AATCAAGAAGGTTGATTTAGGTCCAGGCGGGTATCTTTTTTCG-CAATAGAACCTTTCTGTTTCATGTGCCCCTAGTCTG
GGTGTCAATCGTTTATCATGAAATTAGTTGTTATCTTGAGCAA----CAAAGGGGCGTTGATGTTGTGCATTGTGTCCTG
GAGCTTCGAGTGAAGGGCAGGAGTGCAATGCCTGCCTTTCTCATACTGCTCCAAGAGTAATTATGGCCTTCTCATGAAGG
GAGTGGATGGCCTGTCCCCATTTCTCTTTCTTGGTAAAGATACCGTTGGCGTATATCAGCAGAACATTTTCATAAATACT
TAAGAAGGCTGATTTAAGTCCAGACGGGTGTCTGCACAATAGTGCCTTTCTGTTTCCTGTGTCCCTAGTCTGGGTGTGTG
TTCAAGCAAATAAAAATAAGGGGGGGCGTTGATGTTGTGTATTGTGTCCTGGAACTTCGAGTGAAGGGCAGGGATGCAAT
GCTTGCCTTTCTCATACTGCTCTGGAGAGTAAATGTGGCCTTCTCATGGAGAGAATGATGGCCTGTACCCATTTTTCTCC
CTTGGTAAAGATACCATCGCCGTATATCACCAGCTCTTTGTGTTTGACCTTAAGCTGTTCTTGTGGAAAACAATGGGTGC
TTTTGCAGTGCTAGTGGTAGGATAGCATCTGATCCGATGCATATCTTCTTGTG--CTGAATAATTGGTTGCATTAGATAG
TGAGAATTTCAGTTCTATATTTTTGTTACCTTTGCTGAAGATGGGTTCAAATCACTGACTTGCTTCTTTGGGTCAGGTTT
CAAGATGTCAACCTGCACGTTTGCAGCTTCCTGTGCCCTCTTGGGCAATGCTCGAACAACCGATGCCCCCCAGAAAGCGG
TCAAGAGCCGCCTGAGCTTCCTCGGCCGAGGCGCGCCGCAGCTGCGGAGCCTGAGGTCCTCCTTCCCCTCCAAGAAGCTG
GACGTCTCCGCGGCGGCCACGTACAAGGTGAAGCTGGTGACCCCGGAAGGGGACGAGCACGAGTTTGAGGCGCCGGACGA
CGCCTACATCCTGGACTCGGCGGAGACGGCGGGGGTGGAGCTGCCCTACTCGTGCCGGGCGGGGGCGTGCTCGACCTGCG
CGGGCAAGATCGAGGCTGGCGCGGTGGACCAGTCGGACGGGTCGTTCCTGGACGACGCGCAGCAGGAGGAGGGCTACGTG
CTGACATGCGTGGCCTACCCCAAGTCGGACTGCGTCATCCACACCCACAAGGAGGGCGACCTGTATTAGGAGGGCTCTCA
TCTCTGGTGCCCCCAGTTGGTTGTGTGTTGAGTAGAACAAACCTTGG------------------TGGTTGTTTATCCCG
TGCCTGCCTGTGTGCGTGCTTTGGTCGTTA--------------------------------------------------
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>chr4A_213
ATGTT---------------------------------------------------------------------------
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--------GGATGATGAGGTCAAGCGCAATAGGCGCACAATAAGCATGACTTCTTATGTTTGT-TTTTCCTATTATTGTT
ACAGAGTTTGGCTATTTCTTTTTATTAGAACATGAAATTGGTTGCTCTATTAGGCAATTCATGGTTTGTGTGCTGTGTCC
TGGAGCTTCGAGTGAAGAGCAGGGTTGCAATGCCTGCCTTTCTCATAATGCTCCGAAAGTAATTATGGCCTTCTCATGAA
-GGGAGTGGATGGCCTGTCCCCATTTCTCTTTGTTGGTAAATATACCGTTGGCGTATATCAGCACGGCATTTTCATAAAA
AATTAAGAAGGTTGATTTAGGTCGAGGCGGGTATCTTTTTTCG-CAATAGAGCCTTTCTGTTTCCCGTGTCCCTAGTCTG
GGTGTCAATCGTTTATCATGAAATTAGTTGTTATCTTGAGCAAGCAACAAAAGGGTGTTGATGTCGTGTATTGTGTCCTG
GAGCTTCGAGTGAAGGGCAGGAGTGCAATGCCTGCCTTTCTCATACTGCTCCAAGAGTAATTATGGCCTTCTCACGAAGG
GAGTGGATGGCCTGTCCCCATTTTGCTTTCTTGGTAAAGATACCGTTGGCTTATATCAGCAGAACATTTTCATACAAAAT
TAAGAAGCTTGATCTAGGTTCAGACGGGTATCTGCGCAATAGAGCCTTTCTGTTTCCTGTGTCTCTAGTCTGGGTGTTCA
AGTAACAAA-------------GGGGCGTTGATGTTGTGTATTGTGTCCTGGAGCTTCGAGTGAAGGGCAGGAGTGCAAT
GCCTGCCTTTCTCATACTGCCCCAGAGAGTAACCGTGGCCCTCTCATGGAGAGAATGATGGTTTATCCCCATTTTTCTTC
CTTGGTAAAGATACCATCGCCGTATATCACGAGCTCTTTGTGTTTGACCTTAAGCTGTTCTTGTGGAAAACAATGGGTGC
TTTTGCAGTGCTAGTGGCAGGATAGCATCCGACCCAATGCATAACTTCTTGTGTGCTGAATAATTGGTTGCATTAGATAG
TGAGAATTTCAGTTCTAT-ATTTTGTTACCTTTTCTTAAGTTGGGTTCAAATCACTGACTTGCTTCTTTGGGTCAGGTTT
CAAGATGTCAACCTGCACGTTTGCGACCTCCTGCGTGCTCTTGGGCAATGCTCGAACAACCGATGCCCCCCAGAAAGCGG
TCAAGAGCCGCCTGAGCTTCCTTGGCCGAGGCGCCGTGCAGGTGCCGAGCCTGAGGTCCTCCTCTTT---CAAGAAGCTG
GACGTCTCCGCGGCGGCCACGTACAAGGTGAAGCTGGTGACCCCGGAGGGGGACGAGCACGAGTTTGAGGCGCCGGACGA
CACCTACATCCTGGACTCGGCGGAGACGGCGGGGGTGGAGCTGCCCTACTCGTGCCGGGCGGGGGCATGCTCGACCTGCG
CGGGCAAGATTGAGGCGGGCGCGGTGGACCAGTCGGACGGGTCGTTCCTGGACGACGCGCAGCAGGA---GGGCTACGTG
CTGACGTGCGTCGCCTACCCCAAGTCGGACTGCGTCATCCACACCCACAAGGAGGGGGACCTGTATTAGG---GG-----
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>SNPs
SS-------------------S--------------S----------------------S-------------SSSS---
S-------------S--S----------------------------SS---------SS--S---S--------------
------S------------------------------------------------------------S-----------S
---------SSSSSSS--SS-S----------------------------S-----S----S-S--S-------------
-----------SS---------------------------S---------------S-----------------------
-----------------------------------------------S----------------------------SS--
S----------------------------------------S--------------------------------------
-----------------------------------------SSS------------------------------S-----
------------------------------------------------------------------S-----S---S---
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----------------------------------------------------------------------------S---
------------------------------S----------------------S------S-------------------
----S------------------------------------------S--------------------------------
--------------------------------------------------------------S-----------------
------------------------------------------------------S----------S-------------S
----------SS----------------------------------------------------SSSS------------
--S-----S--------------------------------------------S--------------------------
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S------SS-----S-----------------------SSSSS-SSSSSSSSSSSSSSSSSSSSS--------------S
----------SS--S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_139
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---------------------------------------ATCCCGACTCGTGTTTGGTC---------------------
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>reverse_2039
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--------------------------------------CATGGTTTTTGCGTGGTCGT----------------------
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