>input_sequence_79527
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-------------------------------------ATGATGGGCGCGAGGAAGATCGCCATCATCAACGTGGGCCTGT
CCGGATGTCTGCCAGTGGTCCGCGCCCACGACGCAAGGGGCGCATGCAACGACGGCGTAAACGAGCTCGCGGCCGGATTC
AATGGCGCCCTCAAGTTCTTCCTCGCCGACCTAGCGCCCAGGCTGCCGGGCCTCGCCTACTCACTCGCCGACGGCTTCGC
CCACAGACAAGCCCTCATCGCTAACCCGCAGGCTGCCGGCTTCGTGAACGCGACCAGCGCGTGCTGTGGGAGCGGGAGGC
TCGGTGGGGAGGGCGGTTGCCTGCCCACGTCGAACATCTGCGGCGACAGTGATGGCTACGTCTACTGGGACTGGGACAAG
GTCGATGTTGCCACAGCGAATAGGGGCCACAAGGCTTTTGGCATAGTTGGTGACAGGCCAGTAACCTTCCCAAAGGAGCT
CAAAGTCGAAGCAAAGTAG-------------------------------------------------------------
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>chr5A_1_TraesCS5A01G517100
CGGCTTCATTGGTACGTCGGTCAGTTGATCATATCATTTGTTGGTAGAAAAACGATGATATGTTAGTTGGTGATGTTACT
CATGTATGCAGCCAAGAATCTGGGGTTCGAGAGGAGCCCTCCGGCTTACCTGTCGCTAAAAGCTCATCGTCGTCTGATCG
ACACTGCTCTGCTTAGAGGCGTAAGCTATGCTTCTGCAGGAGCTGGGATTCTCGATTCAACGGTAAGTACTAGTGTAGTA
-------------------------------------------------------------AAGTTGAGCCAGATCGAGA
GATGT---------------------------ATTTTTCCCTTGGAAACTGTCAATGG--------------CCTTGTTT
GAATACTCTAACTCAGTTAGATGTTAGAGTTAGATTTTAATCTTAAACTAACTCTAACCAAAAAGGTGTTTGGATGGCAG
GGTTAAATGGAGCGCGGATACGGCGAGGCGCCTTCACGGACGGTGTGAGAGGGAGGAAGAGAGAGGACGAGAAGCTTCGA
GGAAGTGACGAGGGATCTGCTGTAGGAAGAGTGAGAGAAAAATATGTTTTTTAATGGTCTGGAGAAGAACTAACTCAAAT
AAGCACATCTGGCCCTGTTTGGATACTCTAACTCTGTTAGAGGTTAGAGTTAGATTCTAACCCTGAACTAATTCTAACCA
AAAAGGTGTTTGGATGATAGGATTAGATGAAGCGCGGATACCGCGAAGCCTTTTCACGAGCGGTGCGAGAGAGGATGGGA
GAGGACGAGAAGCT------------------------------------------------------------------
------------------------------------------------------CTCTACGGCAGCCTAATCTCCAACTA
CTCCGCCACCATCACGGTACCGCCTCCTCCACTCGTTCAAAGTAGAGTATACTCCT------ACTTGTTTGCGTCGTTCA
A----CATCCATCCTGCATTATTACTCCAGTCCAGCTCATAGCTAGAATTACCAAACAATCA-AGTCGTTTCGTGGCCGG
CACCATATCGAGATCAGCCAGCTGCTATGTTAGGTAGTCGTACAAAAGAGACGGGTTCCTTGATTCATCGTGGGCACCAA
-CCATTTCTGTTTGCCGGCACA---CAGGATCTGTACATGATGGGCGCGAGGAAGATCGCCATCATCAACGTGGGCCTGT
CCGGATGTCTGCCAGTGGTCCGCGCCCACGACGCAAGGGGCGCATGCAACGACGGCGTAAACGAGCTCGCGGCCGGATTC
AATGGCGCCCTCAAGTTCTTCCTCGCCGACCTAGCGCCCAGGCTGCCGGGCCTCGCCTACTCACTCGCCGACGGCTTCGC
CCACAGACAAGCCCTCATCGCTAACCCGCAGGCTGCCGGCTTCGTGAACGCGACCAGCGCGTGCTGTGGGAGCGGGAGGC
TCGGTGGGGAGGGCGGTTGCCTGCCCACGTCGAACATCTGCGGCGACAGTGATGGCTACGTCTACTGGGACTGGGACAAG
GTCGATGTTGCCACAGCGAATAGGGGCCACAAGGCTTTTGGCATAGTTGGTGACAGGCCAGTAACCTTCCCAAAGGAGCT
CAAAGTCGAAGCAAAGTAGGATCATCCTTGATCGGCGCCACAAAGATGGCAGCATCTGCATACAAGGATGCACGGATGGG
CCGACCACAAAGAGGATGCAACAAGCCTTGACCTTGACAACATTCTACCGGCCTTCACGGCAGTCCGTACTACTTTTTCC
ATGTGATATCATGGTCTTCCATTGTCGGTCACAAGACTAAAGCGCATCCATTTTCAGTATTTGGAGGACAAGGTGGCAGG
CAAGCTTCCGCTGGTCGTCGATGTATGTGGCTATGCTGGGGCGCATTATTTTGATAAGGCCGTGCTCACTGCCATTGCCA
TTTACCACCTCACGCTTCTAGATCTTCCGGTTTTGAAGCGAGAGGTACCTGAAGCGCAAGTACCTGATGTTGCTTGGCAT
CCTCGAGGCCAGCGTGATGTACCAGGC-GGTCTCGCGCGTCCCGGAGGCATGTGGGGTGACGACGATA------------
CCCCGTCGCCGTCCCCATCGGCACACCCGCCCACCGTAGCTGGCAACCCAATCCTGCTTGACTTCAACGCTGCACGGTAC
CAAGCATTCTTCTACTGCAACGCGACTTCCTTTGTGGCCTCTATCGCCGTCATCCTGCTGCTGCTGCAGCGCACCTTGAA
GAAGCAGCAGCCCGGCGCGCCGCTGCGGACGTTGCAGACCGCCGTGGTGCTGGACCTGCTCGGGCTGCTTGGCGCGTACA
CCGCCGGCAGCTGCAGGGACTGGGAGACGTCTGGCTACGTCATCGCGCTCGTAGCCGTCGTGGTCGTCTTCATTGCGCTG
CACGGGCTGTTGTCGTTCGACATCGTGTTTAACAAGGCCAGGAAGCTCCTGCCGAAGAAGTACTTTGGAGGTGGCAACGA
TGTTGAGGCCCAGCCCGGGAATCCCGATCAGACCAGCCGCCATGGAC--------AATGCCTAGTTTATGTTTTCTTTGC
TTGTTTGCGTTCTTTTGATTCCAAATGCGTGCGCCACAGATTCCATTTGATGTGTCTTGTATGTGGAGTAATGAACAAGT
>chr4D_4
---CTTCATTGGTACGTCCGTCAATCGATCATATCATTTGTTGGTAT-AAAGCAAAGACATGTTAGTTGGTGATGTTACT
CGTGGATGCAGCCAAGAATCTGGGGTTCGAGAGGAGCCCCCCGGCTTATCTGTCGCTGAAATCGCATCGTCGTCTGATCC
GGACTGCTCTCCTCAGAGGCGTAAGCTATGCATCTGGAGGAGCTGGGATTCTCGATTCAACGGTAAGTACTACTGGCTAT
CCTTTGGAGGAGTACTAATTAATCCCTTGATTAATTGATTTATACGTACTTCCAAGC-----------------------
-----------------------------------TATCCTTTGGCAACTTTCAATGTATTA--TCATTTGACTTGG---
--------------------CGTGCCCGTGC-------------------------------------------------
------------------------------------------GTGTGGCCGG-CCGGATGCAGGGCGCCGGAAACAACAT
CCCGTTGTCGAAGCAGGTCGAATACTT-----------------------------------------------------
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------------------------------------------------CCATTCGACAAGAGCGGCGATGGAGGCCAAGC
TGGGCTCCGGCGTGGTGACCGACCTGCTCGCGGAATCCTTCTTCCTCATCGGCATCGGCAGCAACGACCTGATACAGTTC
GTCACGGCG---------AAGAACAAGTCGGCGACACAGAGCGACGTGGCCGCGCTCTACGGCAGCCTCATCTCCAACTA
CTCCGCCACCATCACGGTAACTTGTAATTAAGCATGAGCGGGCATGAGCAACCTGCTAGTACAGTTATTTACCTCGTTGA
ACATCCATCGATGCTGCATTATCACTCCAGCTCTCGTAGG-------------------------------------CGA
CAACATGTCAAGATCAGCCAGCTGCTACGTTAGGTATCAGTACA----------------TGCTTAATCATGGGCACCAA
-CCATTTCTGATTTCCGATGCA---CAGGATCTGTACATGATGGGCGCGAGGAAGGTCGGCATCATCAACGCGGGCCTGT
CTGGGTGTATCCCAATGGCCCGCGCGGACGACGCGACCGGCGCATGCAACGACGGCACAAACGAGCTCGCGGCCGGGTTC
AATGGCGCCCTCGAGTCCTTCCTCGCCGACCTAGCGCCCAGGCTGCCGGGCCTGGCCTACTCCCTCGCCGACGGCTTCGC
CCACAGGCAAGTCCTCATCGCCGACCCGCAGGCTGCAGGCTTCGTGAGCGCGACCAGCGCGTGCTGCGGGAGCGGGAGGC
TCGGTGGGGAGGGCGATTGCCTGCCGACGTCGAACATCTGCCGCCACCGTGATGGCTACGTCTACTGGGACTGGG-----
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>chr5A_31
------------------------------ATATCATTAGTTGGTAG-AAAATGATGATTTGTTCGTGA---ATGTTACT
CATGGATGCAGCCAAGAATCTGGGGTTCGAGGGGAGCCCTCCTGCTTATCTGTCGCTGAAAGCTCATCGTCGTCTGATCG
GCACTGCTCTGCTCAGAGGTGTAAGCTATGCTTCTGCAGGAGCTGGGATTCTCGATTCGACGGTAAGTACTA--------
-----------------ATTAATCCACTGCTTAGAGGAGTAGTTTCAAACCAGTTAGTATGAAGTCGAGCCAGATCGAGA
GATCT---------------------------GTTCTCCTTTTGAAGACTGTCAATGTATTG--TGATTGGTCCTTGCTT
AATTCCTCAAAAATTTGGTCCGTGCTTCT---------------------------------------------------
---------------------------------------------------GGCCGGATGCAGGGCGCCGGAAACAACAT
CCCGTTGTCGAAGCAGGTCCAATACTT-----------------------------------------------------
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------------------------------------------------CCATTCGACAAGAGCGGCGATGGAGGCCAAGC
TGGGCTCCGCCGTGGTCAGCGACCTGCTCGCAGAGTCCTTCTTCCTCATCGGCATCGGCAGCAACGACCTGATACAGTTC
GCCATGGCGCAGCAGGCCAAGAACAAGTCGACCACACAGAGCGACGTCGCCACGCTCTACGGCAGCCTCATCTCCAACTA
CTCCGCCACCATCACGGT-ACCTTTAATTAAGCGTGCGCGGGCATGAGCAATCTGCTAGTACAGTTATTTACCTCGTTGA
ACATCCATCCATCCCGCATTATTCCTCCAGCTCACGTG-------GAAACACAAGCCAACCAAAGTTGTTTCGTCGCCGA
CATCATGTCAAGACCAGCCAGCTGCTAGGTTAGGTACTAGTATA----------------TGCTTCATCGTGGGCACCAA
CCCATTTCTGTTTTCTAATACTATGCAGGATCTGTACATGATGGGCGCGAGGAAGATCGGCATCATCAACGTTGGCCTGT
CCGGGTGTATCCCAATGGTCCGCGCGCACGACGCGACCGGCGCATGCAACGACGGCACAAACGAGCTAGCGGCCGGGTTC
AATGGCGCCCTCGAGTCCTTCCTCGCCGACCTAGCGCCCAGGCTGCCGGGCCTCGCCTGCTCCCTCGCCGACGGCTTTGC
CCACAGGCAAGCCCTCATCGCTGACCCGCAGGCTCAAGGCTTCGTGAACGCGACCAGCGCGTGCTGCGGGAGCGGGAGGC
TCGGCGGGGAGGCCCGTTGCCTGCCCACCTCGAACCTCTGCGGCGACCGTGGTGGCTACGTGTACTGGGACTGGG-----
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>chr5A_75
--------------------------------------------------------------------------GTTACT
CATGCATGCAGCAAAGAATCTGGGGTTCGAGACGAGCCCTCCGGCTTATCTGTCGCTGAAAGCTCATCGTCGTCTGATCG
GCACTGCTCTGCTTAGAGGTGTAAGCTATGCATCTGCAGGAGCTGGGATTCTCGATTCAACGGTAAGTACTA-----GTA
-------------------------------------------------------------AAGTTGAGCCAGATCGAGA
GTTTTTTTTCGAAGATCTAGATCGAGAGATACATTTTTCTTTTGGAAACTGTCAGTGTTTTATATCATTTGACTTGA---
--------------TTGATCCGTGCCCGTGC-------------------------------------------------
------------------------------------------GTGTGGCCGGGCCGGATGCAGAGCACCGGAAACAACAT
CCCGTTGTCGAAGCAGGTCCAATACTT-----------------------------------------------------
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------------------------------------------------CCATTCGACATGAGCAAG--------------
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----------------------------------------------------CTGCTAGTACAGTTATTTACCTCGTTGA
ACATCCATCCATCCTGCATTATTCCTCCAGCTCACGTG-------GAAACACAAGCCAACCA-AGTTGTTTCGTCGCCGA
CATCACGTTAGGTACCACC--------------GTACCAGTACA----------------TGCTTCATCGTGGGCACCAA
-CCATTTCTGTTTTCTAATACTATGCAGGATCTGTACATGATGGGCGCGAGGAAGATCGGCATCATCAACGTTGGCCTGT
CCGGGTGTATCCCAATGGTCCGCGCGCACGACGCGACCGGCACATGCAACGACGGCACAAACGAGCTAGCGGCCGGGTTC
AATGGCGCCCTCGAGTCCTTCCTCGCCGACCTAGCGGCCAGGCTGCCGGGCCTCGCCTGCTCCCTCGCCGACGGCTTTGC
CCACAGGCAAGCCCTCATCGCTGACCCGCAGGCTCAAGGCTTCGTGAACGCGACCAGCGCGTGCTGCGGGAGCGGGAGGC
TCGGCGGGGAGGCCCGTTGCCTGCCCACCTCGAACCTCTGCGGCGACCGTGATGGCTACGTGTACTGGGACTGGG-----
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>chr4D_1799
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-----------------------------------AAGCGAGAGGTACCTGAAGCGCAAGTACCTGATGTTGCTCGGCAT
CCTCGCGGCCAGCGTGACGTACCAGGCGGGTCTCGCGCCTCCCGGAGGCACGTGGGGTGACGACGACACCCCGTCGTTGT
CCCCGTCGTCGTCCCCGTCGGCACACCCGCCCACCGTCGCCGGCAACCCGATCCTGCTTGACTTCAACGCTGCACGGTAC
CAAGCATTCTTCTACTGCAACGCGACTTCCTTTGTGGCCTCCGTCGTCGTCATCCTGCTGCTGCTGCAGCGCACCGTGAA
GAAGCAGCAGCCCGGCGCGCCGCTGCGGACGTTGCAGACCGCCGTGGTGCTGGACCTGCTCGGCCTGCTTGGCGCGTACG
CCGTCGGCAGCTGCAGGGACTGGGAGACGTCTGCCTACGTCATCGCGCTCGTAGCCGTCGTGGTCGTCTTCATTGCGCTG
CACGTGCTGTTGTCGTTCGACATCGTGTTTAACAAGGCCAGGAAGCTACTGCCGAGGAAATACTTTGGAGGTGGCAACGA
TGTTGAGGCCCAGCCCAGGAATCCCGATCAGGCCAGCCGCCATGACAGCATGGAGAATGCCTAGTTTATGTTTTCTTTGC
TTGTTTGCGTTCTTTTGATTCCCAATGCGTGCGCCACAGGTTCCATTTGATGTGTCTTGTATGTGGAGCAATGAACAAGT
>SNPs
SSS---------------S----S-S---------------------S--------------------------------
----S-------------------------------------------S--------S----------------------
S-----------------------------------------------------------------------S--SS---
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---S------------------------------------S----------------S-------------------S--
S-S-S---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SSS---SS-S-SSS----S--SS---S-SS-SS
SSSSS--S---S-S-SS-S-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--SS--S--S-SS----SS----SSSS-S
SS--SSSS-SS-SS------------------------------------------------------------------
--------------------------------------------------------------------S-----------
-------------------S-SSS-SS-SS-SSSSSSSSSS-S-SSSSSS--SSSS-------S--S---S-S-----S-
------------------------------SS--SS-SSSSSSSS---SS--S-SS---S------S-------S----S
--S---S--S-----------------S--------S-S-----SSSSSSSSSSSSSSSS--S-----------------
-------------S---SS----------------------------------------S--------------------
----S---S-S---S----------S--------S-SS------------------SS------------------S---
------------S---S---------------------------------------------S-----------------
------S---------------S-------------S-----------------------------S-------------
-----------------------------------------------S---------------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------S-----
-----S-----------S--------------------S-----------S---------------S-------------
--------S-------S--------------------S--S--------S------------------------------
-----------------------------------------SS---S----------------------------S----
---------------------------------------------------------------S---------------S
---S-----------------------------S----------------------------------------------
----S------------------------------------------S-------S---S--------------------
----------------S--------------S------------SSS---------------------------------
----------------------S----------------S----------------------------S-----------
>forward_814
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--------------------------------------------------------------------------ATGGGA
GAGGACGAGAAGCT------------------------------------------------------------------
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>reverse_1933
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------------GGTCGTCGATGTATGTGGCT------------------------------------------------
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