>input_sequence_79519
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---------------------------------------------------------------ATGTCGAGCCGCCGTGG
CAGGATCACCGACGAGGAGATCAACGAGCTCATCTCCAAGCTCCAGGCGCTGCTCCCGGAATCATCCCGCCGCCGCTCCG
CGAGCCGGGTACGTACTCACGCGAGCGCGCATTGGTTCTCCTGCGAGTT---GCTTGTTACATGCGTGCGTCCGTGCAGT
GCACCGTCACTG----ACAGGCCGGCCGCGACTGTGCATTTCGTCACGGCGGCGCCGCCAAGTCTACCCTGAGAAGGATT
AGCACTGTTATTTTTCTTCCTCACTGTTCCTGACATGAATGCTATGCTGTGCTGTGCAGTCGTCGGCGTCGAAGCTACTG
AAGGAGACGTGCGGCTACATCAAGAGCCTCCACCAGGAGGTGGACGATCTGTCTGACAGGCTCTCTGAGCTAATGTCGAC
CTTGGACGAGAGCAGCCCCCAGGCCGAGATCATCCGGAGCCTTCTCCGCTAG----------------------------
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>chr4B_1_TraesCS4B01G288000
TTTATGCCTCCTTGGTGAATGAAATAAGATTGCTATTGCGTTTTAGGCAAACTTGTATTCCTCATGTTT----------G
AATAAGGTTAGTGATAGTTTAGCTAGATTTGCTAAGAGTAGCCACAATGGTGAGTAACATAAACTATTTACATACACATA
TCGCTAGACTATGTTACTGCCTTCATAGTGGGTAGTAACATAAATGTGGTAACATGCAAAACTTTATTTATTAGGTTATA
GACTCATATTGCATTGGGACATGTGATGTTACAGTAACTAGCTAAGTTACTATAACTACCTCTCTCCTCATTAACTCACT
GCCACATAAACAAATTTACTGAGTTGGACTCGATGTTACTGCTGAAGTTACTCCCACTGTGACTAGTCTAAAGTAGAAGG
CCGGACTATAACTTGGTGAGGGTCCGGTCCTGAGGAAGTTTTGGGAATTGTCACTAATGACTG---TAAAGACATTGTGA
TTGAGTGATACAAGTATTTCTCTCACACACAAAAAAAGATGCTCATACTTATTTGCAATATTTACTCTGGCTGACTGCAC
GCG-TTGTTCGAAATCATAATCACAGAGGACAGTGGAGCAATTGTGCCCCGGCCCTGGGGGGGTCCTGGCACGACTCC-T
GGAGCCCATGGGCCGGGC--------------------------------------------------------------
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-------------CTGGTCATCATTCTGGGTCCTCCAC-TGTCTGGATCCCGGGCCTGGTCATTTTGGGGCCAGTGTCGG
GAGCCCAGGCCTAAATGAAGGCGCAGTGGGCCCGTGGCCTCTTTTCGCCATCAATGTGCTAGACGATCTCTGCCCCGTTC
TCCTTCAAATAGCCACCCCGGCTGCGCTGCCTG----CCTCCTCGTTCTCTCTGCTCTCCTCTCACTCAGACACTCACCA
TCACA--GTCACACGCAGACGCTTCATCGGCTGAATCACCAGCCAAGGTAAAGCATCAACACATACACGAGCAAGCAAGG
AAAGCCAAGCGTTAGCTGTCTCCAATCAGAGCCGGCCGGCCGC------AGAGAGAGAGTGAGATGTCGAGCCGCCGTGG
CAGGATCACCGACGAGGAGATCAACGAGCTCATCTCCAAGCTCCAGGCGCTGCTCCCGGAATCATCCCGCCGCCGCTCCG
CGAGCCGGGTACGTACTCACGCGAGCGCGCATTGGTTCTCCTGCGAGTT---GCTTGTTACATGCGTGCGTCCGTGCAGT
GCACCGTCACTG----ACAGGCCGGCCGCGACTGTGCATTTCGTCACGGCGGCGCCGCCAAGTCTACCCTGAGAAGGATT
AGCACTGTTATTTTTCTTCCTCACTGTTCCTGACATGAATGCTATGCTGTGCTGTGCAGTCGTCGGCGTCGAAGCTACTG
AAGGAGACGTGCGGCTACATCAAGAGCCTCCACCAGGAGGTGGACGATCTGTCTGACAGGCTCTCTGAGCTAATGTCGAC
CTTGGACGAGAGCAGCCCCCAGGCCGAGATCATCCGGAGCCTTCTCCGCTAGCCGGACTTTATCCTACCAC----GCCAG
TAGGCAATAGCTACATATATATTAGCTTCAATTCATCGACCCAA-GAGGGAGACGAGGAGGCAAGACAAGAGAAGAGAAG
ACAACAAGAGAGGCATAGCATTTTTTAGCTGCTGCTTGTTTCTTTTCCTTCCTGCTCCCCCGTCTCCTGGTACGTCGTCG
TC--------TGTG------TGTGTTTGTGAGGCCCTCATTTAGCTTCCGGTATACTCC------ACTGTGTTTCATTTA
TGCACCAGGTTGGTAGAGGTTAATAATATATATGGTACTTCTACCGATTAACTGAGTGTATTACTACTAGGTTGTAGACG
TGTGTGTTTGTGCTGTTGTAGGCCTGTAGCT--------------------------CCTCTCAGACTG---AGATGCAT
CTCCTCTACCTATAGAGGTGTTGTTTTGTAGTAACTAC---TAGTACTATCTATTGCTAGCTTTGTCCTTGTTTTCCAAC
GGACAAGCTAG----GTTAACGACGACCGTGGACTACGGAGAACTGTCTGTTTTTCTACTATCTGTTTAATTACTGCCAT
GTCTTCTCTGCATAACTTACTGCTACTACTACGTACGGTCAAGTTATTTGGAGCAACGTGCAGGTGCCAC----------
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----------------------------------ATAGAAAAGTGAAGAACCTCTCGTGCGTGCTAG-GGGCGTACGTGC
GCATGTAACGTCGAAATAGCCGGTGTACTTGTAAATGTAAAAAGAAGATATAAAAATGAGCGAGACGTTCCATGGTGCAA
AAGAACCCTATTACCTAGAGGGTCAAACATTTGGCTTCTCGAGTGATAGGCCCCAGGAACAGGAGGTGTCTTCATCTTTT
GTGAACTTGGCCCCATGAAGTGTCAACTTTTCGCCTACAAGATCTCCGCAATCAAGCACGGCGTCGGATCCCTCCAAACC
AACT---------------------------AGTCGATCGACATGGCAGTCCGCGAACGAGAGCCGTCCGATCAGCAGCC
AAAGCATGAGATCCGTAGTGTTTTCTTCTGATTATTTTGGTTTATAGAGACGTGTCATGTTCGAA
>chr4A_1
TTTATGCCTCCTTGGTGAATGAAATAAGAATGCTATTGCGTCCTAGGCAAACTTGTATTACTCAGATTTCTCGTTCTCGG
AATAAGGCTAGTGGTAGTTTAGCTAGATTTGT------------------------------------------------
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--------------------------------------------------------------------TAGAGTAGAAGG
ACGGACTATGACTTGCTTAGAGTCCGGTCCTGATGAAGTTTTGGGAATTGTCCTTGATGACTATAATAAAGACATTGTGA
TTGAGTAATACAAGTATTTCTTCCAAAAAAACAAGAAGACGCTCATACTT----GCAGTATTTACTCTGGCTGACTGGCA
CACATTGCTCGAAATCATAATCACAGAGGACAGTGGAGCAATGGTGCCCCGGCGCT---GGGGTCCTGGCACGACTCCCT
GGAGCCCATGGGCCGGGC--------------------------------------------------------------
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-------------CTGGTCATCATTCTGGGTCCTCCAAATGTCTGGAGCCCGGGCCTGGTCATTTTGGGGCCAGTGTCGG
GAGCCCAGGCCTAAATGAAGGCGCAGTGGGCCCGTGGCCTCTTTTCGCCATCAATGTGCTAGAC------TGCCCCGTTC
TCCTTCAAATAGCCGCCCCGGCTGCGCTGCCTGCCTA---CCTCGTTCTCTCTGCTCTCCTCCCACTCACACACTCACCA
ACACA--GTCACACGCAGACGCTTCATCGGCCGAATCACAGGCTAAGGTAAAGCATCAACATATACACGAGCAAGCAAGG
AAAGCCAAGCGTTAGCTGTCTCCGATCAGAGCCGGCCGGCCGCAGAGAGAGAGAGGGAGGGAGATGTCGAGCCGCCGTGG
CAGGATCACCGACGAGGAGATCAACGAGCTCATCTCCAAGCTCCAGGCGCTGGTCCCGGAATCATCCCGCCGCCGCTCCG
CGAGCCGGGTACGTACTCACGCGAGCGCGCATTGGTCCTCCTGCGAGTTTTTGCTTGTTCCATGCGTGCGTCCGTGCAGC
GCACCGACACTG----ACAGGCCGGCCGCGACTGTGCATTTCGTCACGGCGGCGCCGCCAAGTCTACCCTGAGAAGGATT
AGCACTGTTGTTTTTCTTCCTCGCTGTTCCTGACATGAATGCTATGCTGTGCTGCGCAGTCGTCGGCGTCGAAGCTGCTG
AAGGAGACGTGCGGATACATCAAGAGCCTCCACCAGGAGGTCGAGGACCTCTCCGACAGGCTCTCGGAGCTAATGTCGAC
CTTGGACGAGACCAGCCCCCAGGCCGAGATCATCCGGGGCCTTCTCCGCTAGCCGGATTTTATCCTACCGATTGAGCCAG
TAGGCAGTAGCTACATATATATTAGCTTGAATTCATCGGCCGAAGGAGGGAGACGAGGAGGCAAGACAAGAGAAGAGAAG
ACAACAAGAGAGGCATAGCATTTTTTAGCTGCTGCTTGTTTCTTTTCCTGCCTGCTCCCCCGTCTCCTGGTACGTCGTCG
TCCGTGTGCGTGTG------TGTCTTTGTGAGGCCCTCATTTAGCTTCCGGTATACTCC------ACTGTGTTTCATTTA
TGCACCAGGTTGGTAGAGGTTAATAATATATATGGTGCTTCTACCGATTAGCCGAGTGTATTACTACTAGCTTGTAGACG
TGTGTGTTTGTGCTGTTGTAGGCCTGTAGCT--------------------------TCTCTCAGACTG---AGATGCAT
C--CTCTGGCTATAGAGCTGTTGTTTTGT----ACTAC---TAGTACTATCTATTGCTAGGTTTGTCCCTGTTTTCCAAC
GGACAAGCTAGCTAGGTTAACGACGAGCGTGGACTACGGAGAACTGTCTGTTTTTGTACTATCTGTTTAATTACTGCTAC
GTCTTCTCTGCATAACTTACT----CTACCACGTACGGTCAAGTTATTTGGAGCAATGTGCAAGTGCCAC----------
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----------------------------------ATAGAAAAGTGAAGAACCTCTCGTGCGTGCTAG-GGGCGTACGTGC
GCATGTAACGTCGAAATAGTCGGTGCACTTGTAAATGTAAGAAGA-----------------------------------
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>chr4D_1
TTTATGCCTCCTTGGTGAATGAAATAAGCCTGCTATTGTGTCTTAGGAAAACTTGTTTTGCTTAAGTTTCTTGTTCTCAG
AATAAGGCTAGTGGTAGTTTAGCTAGAATTGT------------------------------------------------
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--------------------------------------------------------------------TAGAGTAGAAGG
ATGGACTATAACTTGGTTAGGGTCCGGTCCTGATGAAGTTTTGGGAATTGTCCTTGATGACTG---TAAAGACATTGTGA
TTGAGTAATACAAGTATTTCTCCCAA-----AAAAAAGATGCTCATACTT----GCAGTATTTACTCTGGCTGACTGGCA
CACATTGTTCGAAATCATAATCACAGAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTGGTCAACATTCTGGGTCCTCCAG-TGTCTGGAGGCCGGGCCTGGTCATTTTGGGGCCAGTGTCGG
GAGCCCGGGCCTAAATGAAGGCGCAGTGGGCCCGTGGCCTCTTTTCGCTATCAATATGACGATCTATGC---CCCCGTTC
TCCTTCAAATAGCCACCCCGGCTGCGCTGCCTGCCTACCTCCTCGTTCTCTCTGCTCTCCTCTCACTAAGACACTGACCA
TCACAGTGTCACACGCAGACGCTTCATCGGCTGAATCACCAGCCAAGGTAAAGCATCAACACATACACGAGCAAGCAAGG
AAAGCCAAGC-TTAGCTGTCTCCGATCACAGCCGGCCGC--------AGAGAGAGAGAGGGAGATGTCGAGCCGCCGTGG
CCGGATCACCGACGAAGAGATCAACGAGCTCATCTCCAAGATCCAGGCGGTGCTCCCGGAATCATCCCGCCGCCGCTCCG
CGAGCCGGGTACGTACTCACGCGAGCGCGCATTGGTCCTCCTGCGAGTT---GCTTGTTCCGTGCGTGCGTCCGTGCAGT
GCACCGTCACTGACGTACAGGCCGGCCGCGACGGTGCATTTCGTCATGGCGGCGCCGCCAAGTCCACCCTGAGAAGGATT
AACGCTGTTATTTTTCTTCCTCACTGTTCCTGACATGAATGCTACGCTGTGCTGTGCAGTCGTCGGCGTCGAAGCTACTG
AAGGAGACGTGCGGATACATCAAGAGCCTCCACCAGGAGGTTGACGATCTCTCCGATAGGCTCTCGGAGCTAATGTCGAC
CTTGGACGAGACCAGCCCCCAGGCCGAGATCATCCGGAGCCTTCTCCGCTAGCCGGATTTTATCCTACCGATCGAGCCAG
TAGGCAGTAGCTACATATATATTAGCTTGAATTCATCGGCCGAA-GAGGGAGACGAAGAGGCAAGACAAGAGAAGAGAAG
ACAACAAGAGAGGCATAGCATTTTTTAGCTGCTGCTTGTTTCTTTTCCTTCCTGCTCCCCCGTCTCC-GGTACGTCGTCG
TC--------TGTGTGTGTTTGTGTTTGTGAGGCCCTCATTTAGCTTCCGGTATACTCCTACTCCACTGTGTTTCATTTA
TGCACCGGGTTGGTAGAGGTTAATAATATATATGGTACTTCTACTGATTAGCTGAGTGTATTACTACTAGCTTGTAGACG
TGTGTGTTTGTGCTGTTATAGGCCTGTAGCTTTGTCACTGTTTTCTACTGATTAGTTTCTCTCAGACTGATGAGATGCAT
C--CTCTAGCTATAGAGGTGTTGTTTTGT----ACTACTACTAGTACTATCAATTGCTAGCTTTGTCCCTGTTTTCCAAC
GGACAAGCTAGCTAGGTTAACGACGACCGTGGACTACGGAGAACTGTCTGTTTTTGTACTATCTGTTTAATTACTGCCAC
GTCTTCTCTGCATAACTTACTACTC------CGTACGGTCAAGTTATTTGGAGCAATGTGCAAGTGCCACGTAGGCCCTG
TTTTGATTCATGGGTTAGAGCTAGTTTGAGCTAGTTTGGGTTCAAATAGCTCTAAAGTCTTCAAACATGAGACTAGTTTA
AACTAGTTGCATCTAACCCACCTAAAAAACTATCCCATCCAAGATGTGCTAATTGGAGCTAGTTCTCCTAGTGCATTTAT
TGTTAATCTAACCTTGTCATCCAAACACCTCTTTGACTAGAGTTAGTTCAAGGTTAGTCATGAGCTAAAAACTAACTCTA
ACATCTAGCTAAGTTAGAGTATCCAAACAGGACCATAGAAAAATGAAGAACCTCTCGTGCGTGCTAGCGGGCGTACGTGC
GCATGTACCGTCGAAATAGTCGGTGTGCTTGTAAATGT---AAGAAGATATAAAAATGAGCGAGACGTTCCATGATGCAA
AAGAGCCCTATTACCTAGAGGGTCAACATTTTGGCTTCTCGAGTGATAGGCCCCACGAAAAGCAGGTGTCTTCATCTTTT
GTGAACTTGGCCCCATGAAATGTCAACTTTTCGCAAACAAGATCTCCGCAATCAAGCACGGCGTCGGATCCCTCCAAACT
ATAGTCGATCAACAGTAAAAAGAAAAACACAAGTCGATCGACATGGCAGTGCAGGTACGAGAGCCGTCCGATCAGCTGCC
AAAGCATGAGATCCGTAGTGTTTTCTTCTGGTTATTTTGGTTTATAGAGACGTCTCATGTTCGAA
>SNPs
-----------------------------S-----------S-----------------S----S---------------
-------S-----S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---------
S----------------S---------------S------------------SS-S------------------------
------S---------------S--S-S-S--------------------SSSS---S-------------------SSS
SSS---------------------------------------S----------S--SSS---------------------
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-------------------------------------S---------S--------------------------------
----------------------------------------------------------------S--SSS----------
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-----------------------S-----------------------------------S--------------------
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------------------------------------S----------------------S--------------------
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--------------S--------------------------S--------S--S-----------S--------------
-----------S---------------------------------------------S-----------SS---------
------S---------------------S---------S--S--------------------------------------
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--------------------------------------------------S-------------------S---------
---------------------------------------------------------S----------------------
-SS-----S--------------------SSSS-----------------------------------S-----------
-------------------------------------------------------S-----------------------S
---------------------S--S----S--------------------------S-----S-----------------
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-------------------S--------------------S---------------------------------S-----
----S---------------------SSS--------------------------S---S--S-----------------
-------------------S--------------SS-------------------------------------------S
-SSS----------------------------------------------S-SS-S--------------------S---
------------------------------S----------------------S-----------
>forward_561
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-------------------------------------------------------------TTACTCTGGCTGACTGCAC
G-------------------------------------------------------------------------------
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>reverse_3117
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----------------------------------------------------------------------------AGCC
AAAGCATGAGATCCGT-------------------------------------------------
