>input_sequence_79518
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---------------------------------------------------------ATGGCCGCTCTCTCCTCTGCAGC
GGTGTCCGTCCCTTCCTTCGCCGCCA---------CCCCCATGCGCAGCAGCAGCAGCAGGATGGTGGTGCGCGCGTCGC
TGGGCAAGAAGGCCGCCAGCGCGGCCGTGGCCATGGCCGCGAGCGCGATGCTGCTGGGCGGGTCGGCGATGGCGCAGGAC
GTGCTCCTGGGCGCCAACGGCGGCGTGCTGGTGTTCGAGCCCAACGACTTCAGCGTCAAGGCCGGCGAGACCATCACCTT
CAAGAACAACGCCGGGTACCCGCACAACGTGGTGTTCGACGAGGACGCCGTGCCCTCCGGCGTGGACGTCTCCAAGATCT
CCCAGGAGGAGTACCTCAACGCCCCCGGCGAGACCTTCTCCGTCACCCTCACCGTGCCCGGCACCTACGGCTTCTACTGC
GAGCCGCACGCCGGGGCCGGCATGGTCGGAAAGGTCACCGTCAACTAA--------------------------------
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>chr4A_1_TraesCS4A01G499500
GGACT---------------------------------------------------------------------------
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-------------------------------------------------------------------ATCAAGCTTAGAT
GGAATT-AAATAGATAATTCTCGATGGTATGTGTCTACTACTCGCACCGTTCCACTTCCACAATGTAGTGTGTATAT-TT
TTTATG-AAGTCAAACTTTATAAATTTTAGTCAAGTTTATAGAGA--AAAA-ACCTATACATCTAGAAAACCAAAATACA
TATCATTACATACATCACAAGACGTATTTTCGTGTTATACCT-ATTTGGCTGAGTTTTCAAAAAA-TCTATATGCACTAC
ATTGTGAAACGGATTGAGTAATAATTTGTCCTTGAATATCGTCTTCTATTCTCGGTTGGTGGGGCCATCAACACATCGTT
CGCTATGGCTTTTATCAACAC----TTGATTACTCTGCATAAGTGGAGCAGAGCAAGGAGAGGGGGGATCTCAAAGTCTC
GCCG------TCTACAAGGGGCCGGGGTGCCGTATAGATTAGATTGCCACATGGCACAATCCAGGCACGACCTTATCCCA
ATCATTTTCCTGCGAAAATATTTTGATTGCCGATGGAAATAGCTGTAATTTTTATGTAAAACGATA---CCTATGTTGTT
CCTTGGCACGGTGAGATAACCAAGTTACTCAATGATGGAGGTAGCATATGTATCATAGAATGAGTTGAGTTGATGATGAT
ACATAAATAGTGGAGTCGAGTGAATGTGTATGCATGTACAT----ACGTTGCAGCTGTGGACAAGACGAGGATGGGATGA
TGCATTTGTGGACCATATATATCAGGACAGTAGGACATGTGGAGGATAT------TGTATGGATGACATGCAAGCCAATG
GACCTCACCTCATCCGGATGGGGAGGTAGCAGCCAATCAGGCGCCGGCATCCAGATTTGGTTACCGTTCATCCTGGCCAC
CCAATCCTCATGCTCTTCTTCTGGGTATATATAAAACCAACCAACCAGCACCTTGCCTCGTCTAGCTCTATCTATCTACG
TACGT----ACTCTTTCCCAGCCAACCACTCCCACTTGCTAGCTAGCAGCAGCAGCCATGGCCGCTCTCTCCTCTGCAGC
GGTGTCCGTCCCTTCCTTCGCCGCCA---------CCCCCATGCGCAGCAGCAGCAGCAGGATGGTGGTGCGCGCGTCGC
TGGGCAAGAAGGCCGCCAGCGCGGCCGTGGCCATGGCCGCGAGCGCGATGCTGCTGGGCGGGTCGGCGATGGCGCAGGAC
GTGCTCCTGGGCGCCAACGGCGGCGTGCTGGTGTTCGAGCCCAACGACTTCAGCGTCAAGGCCGGCGAGACCATCACCTT
CAAGAACAACGCCGGGTACCCGCACAACGTGGTGTTCGACGAGGACGCCGTGCCCTCCGGCGTGGACGTCTCCAAGATCT
CCCAGGAGGAGTACCTCAACGCCCCCGGCGAGACCTTCTCCGTCACCCTCACCGTGCCCGGCACCTACGGCTTCTACTGC
GAGCCGCACGCCGGGGCCGGCATGGTCGGAAAGGTCACCGTCAACTAATTAAGCTAGCTCCATATCGCTGTT-----CTT
GCGAGTTTGGGTTCATTGTTGATGGGTCAGACCGGAC--GTGTCATGCATGCATATTGATTAATTGTACCAACGTACGCT
ATATGTATATGTTTTC---TACTACTATAAGATGAGATGAGGCTCTTGATCATAAGCAATC-CTTCTTCTTAGCTTTGAT
TTGATTGATGACCTAAGGCTGCGGTGGATGATTAGCTTTGATTTATTTTCAATTTGTTGTCGAAAATTAGCTGCCTGGCC
GTGGCGTGGCTTCTTGCACGCGATTAGTGTCACGTGTCAGATATACTACTATGTGGAGTGAAGTCCGAAATAAATCCTGA
CGTTGTAGAGGTCGACACAAATGAACCCTCACCTTTAAATCCCTGAAGTTGATACCCTACATTTACAAATCCCGGTCAAT
CCCGACCCTGCATGAGTAAAATCTTGTTTTGTGTAATTGGAAAGGTGCGATCCCAGCCAGGATTGATTTCTGCAGTGACT
TACTACATGGGCCCACCTATTATCATATGCATACCCTATCGGACCAGCTGCGGTGCAGCGGTGACCGGCAGCGCCCCAAC
CGACCAGGTGCAGTGCAGTGGTGACCGGCAGCGGCGCCGACGAGCTCCTCAACAGTGTGCTACACCTGGGCAAGCCCAAC
CTGAGAGCAGGGGCGGAGCCAGGATTTGGTCATGAGGGGGGCGAAAAGCCAACATTCACAAAAAGTCATGGAAAATCACG
ATATTTTAAGGCTTACGATAGTGTTGATGATAAATCATCAAAATGTATATCTGAAACTACAAAAAAAATGTGATATTTCT
GTTAACTTAAATTGACTCTACGACCACCAGTGTTGGACAAGTTGATAATGTGAACTTTACAACTATTTTTCCTTAACAAT
ATAGACAATCATATAATGTTGAAAAAAAATGTCTTCATCTTGGTTCGAAAACATTTTCTTGACTAGTTCTTACCGAAAAA
GCTTGTTTGGTTGTCGCGG
>chr7D_1
TCAAT---------------------------------------------------------------------------
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--------------------------------------GATTGAGGTATTATACCATAGAATGAGTTGAGTTGATGATGA
TACATAAATAGTGGAGTCGAGTGAATATATATGTACGCACACATGTTGCAGTCGTGGACAGATGGGATG-------ATGT
GTTTGTGGACCAATGCTGGGCGTGCTACTTGGGA--AAAACAAAGGGAACCCTTTCACGATACAAAATGAAAAGAGTAAA
TTCATCTGCTGCATTCAACATGATGAGCAGGAGCAGGTCTCGTCATCAATCGGAGGAGCAAATGCAGGCGGGAAGTAAAA
CCGACAGATATACGGAGATCCTCCAAGAGAATCATGCATTACATGCTGCCCACTTCAGCTGTCACACTTGTCCAGCAGCT
GGCAGGTAAAAAGAGTTCATTGCTACACATGCATGCGCCAGAGCAAATCTGTAGCAACACGGTAGTCGTACGTGGTAGTA
ACTCCTGTTGTAGCACTGTGGCAAGTGGATACAAAAGATAGGCCATGTAGATAAGGCACTGTTCCTCTAGGGCTCTTGGC
CGTAGCCTATAGAGGCACCCATGGCCACGGCTAGCCTTTGCATTTGACGTGGTTGGACGAAAAGTGAGGGCGTGCCGCTC
CGGCCGAGGCACCCACGAGTAATAACAGTTCTGCCTTGATCTATAAGAAGAGGAGACGCCTGAGCTGATCAACAAATCAT
TCGTTTGCGC---CTAAATATAGGGCAAACCTCATTACCTTGAGTTATGCATTCTTACTTATTTATGCTAAACTTTTTTA
CATCAAAATAATTCGACTTGTAGTTAAATGTATTTTTTTTCTTGAAACAACATTCAGTATTACTGTGCTGAATACTAAAA
TATTAGGTATAATTAGCAAAATTATCAATGTAAACACACTTGTATATTATGCCAATATACTTACTATTACACAATCATTT
GTTGGTATAGTGGATTTTCAAACAATTTGTTGGTATAGTGGATTCTCAAACACACTTGTATATTATGCCAATATACTTAC
TATTAAACAATAACAGTTTGTATATTTTGTCACAATTTTCTTATTTAGTTCAAGATAATTAAGAAACTATGTTGTTA---
-TAGTGGATTTTCTCTATAAATCTTAGCAAAAATATATTTCAAATTATGATTTCATATGGTGCCTTCTTGTATACTTAAA
TATCGCAGAGAGTATGGATCTAGCAATCTAGCAAATAACTCGAAAGATGTTTCTAGGGTATAGGACCATCAAGCTTAGAT
GGAATT-AAATAGCTAATTCTCGATGGTATGTGTCTACTACTCCCACCA------TTCCACAATGTAGTGCGTATTGA-T
TTTTTT-AAGTCAAACTTTATAAACTTTAACCAAGTTTAT--AGA--AAAA-ACCTATACATCTAGAATACCAAAATACA
TATCATTACATACATCACAAGACGTATTTTCATGTTGTACATAATTTGGCTGACTTTTCAAAAAA--CTATATGCACTAC
ATTATGAAACGGAGGGAGTAGTATTTTGTCCTTGAATATCGTCTTTTGTTCTCGGTTGGTGGGGCCATCAACGCATCGAT
CGCTATGACTTTTATCAACAC----TTGATTAATGTGCATAAGTGGAGCAGAGCAAGGAGAGGGT-GATCTCAAAGTCTC
ACCGGTCGTCTCTACAAGGGGTCGGGGTGCCGTGTAGATTG-----CCACA-GGCACAATCCGGGCACGACCTTATCCCA
ATCATTTTCATGTGAAAATATTTTGATTGCAGATGGAAATAGCTGCAATTTTTATGTAAAACGATA---CCCATGTTGTT
CCTTGGCACGGTGAGATAACCCAG----TCAATGATGGAGGTAGCA----TATCATAGAATGAGTTGCGTTGATGATGAT
ACATAAATAGTGGAGTCGAGTGAATGTGTGTGCATGTACAT----ACGTTGCAGCTGTGGACAACACGAGGATGGGATCA
TGTGTTTGTGGACCATATATATGAGGACAGGACATGC------GGATAT------TATATGGATGATATGCAAGCCAA-G
GACCTCACCTCATCCGGATGGAGAGGCGGCAACCAATGGGGCGCCGGCATCCAGATTTGGTTACCCTTCATCCTGGCCAC
CCGATCCTCCTGCTCTTGTGG-------ATATAAAACCAGCCAACCAGCAGCTTGCCTCGTCTAGCTCTATCTACCTACG
TACGCTGCCACTCTTTCCCAACCACTTACTTAGCTAGCT-----------AGCAGCCATGGCCGCCCTCTCCTCTGCAGC
GGTGTCCGTCCCTTCCTTCGCCGCCAAGGCTGCCACCCCCATGCGC------AGCAGCAGGATGGTGGTGCGCGCCTCCC
TGGGCAAGAAGGCGGCGAGCGCCGCGGTCGCCGTGGCGGCCAGCGCGATGCTGCTGGGCGGGTCGGCGATGGCGCAGGAC
GTGCTCCTGGGCGCCAACGGCGGCGTGCTGGTGTTCGAGCCCAACGAATTCAGCGTCAAGTCCGGCGAGACCATCACCTT
CAAGAACAACGCCGGGTTCCCGCACAACGTGGTGTTCGACGAGGACGCCGTGCCGTCCGGCGTGGACGTCTCCAAGATCT
CCCAGGAGGAGTACCTCAACGCCCCAGGCGAGACCTTCTCAGTCACGCTCACCGTCCCCGGCACCTACGGCTTCTACTGC
GAGCCGCACGCCGGGGCCGGCATGGTCGGAAAGGTCACCGTCAACTAAGCTATCTTCTAGTAGCTCCCTGTCCTGTCCTT
GAGAATTTGGGTCCATTGTTGATCGGTCAGACCGGAGGTGTGTCATGCATGCATATTGATTAATTGTACGAACGTACGCT
ATATGTATATGTTTTC---TA------TAAGATGAGATGAGGCTCTTGATGATAAGTAATC-CTTCTTCTTAGCTTTGAT
TTG-----------------------------------------------------------------------------
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>chr7A_1
ATAGAGAAAAATATGTACATCTAGAATACCAAATACATATCATTAGATACATCATAAGACGTATTTTCATGTTGTACATA
TTTGGCTGACATTTCAAAAAATCTATATGCACTATATTATGGGAGTAGTAATTTGTCTTTGAATATCGTCTTCTGTTCTC
GGTTGGTGGGGCCATCAACGCATCGATCGCTATGTCTTTTATCAACACTTGATTAATCTTCATAAGTGGAGCAGAGCAAG
GAGAGGGGGGATCTCAAAGTCTCGCCGTCTTCAAGGGGTGGGGGTGCCGTGTAGATTGCCACATGGCACAATCCAGGCAC
GACCGTATCCCAATCATTTTCCTATGAAAATATTTTGATTGCGGATGGAAATAGCTGCAATTTTTATGTAAAACAATACC
CATGTTGTTTCTTGGCATGGTGAGATAACCCGGTCAATGATGGAGGTATCATATCATAGAATGAGTTGAGTTGATGATGA
TACATAAATAGTGGAGTTGAGTGAATGTATATGTA--CACACATGTTGCAGCCGTGGACAAGATGAGGATGGGATAATGT
GTTTGTGGAGCAATGATGGGCGTGCTACTTGGGAAAAAAACAAAGGGAACCCTTTCACGATACAAAATGAAAAGAGCCAA
TTTATCTGCTGCATTCAACATGATGAGCAGGAGCAGGTCTCGTCATCAATCGTAGGAGCAAACGGGGGCGGGATGTAAAA
CCGATAGTTATACGGAGATCCTCCAAGAGAATCATGCATTACATGCTGCCCGCTTCAGCTGTCACACTTATCCAGCAGCT
ACCAGGTAAAAGGAGTTCATTGTTGCTCATTCATATACCTGAGCAAAGCTGTAGTAACACGGTAGTCGTACGCGGTAGTG
ACTCCTATAGCAGCATCGTGGCAAGAGGAGACAAAAGATAGGCCATGTAGATAGGGCACTGTTCCTCAAGGGCTCTAGGC
AGTAGCCTATAGAGGCGCCCATGGCCACGACCAG-CTTTGCATTTGATGCAGTTTGACGACTAGTGAGGGTGTGCCGCTC
CAGCCGAGGCACCCATGAGTAACAACAGTTCTGCCTTGATTTATAAGAAGAGGAGACGCCTGAGCGGATCAACAAATCAT
TTATTTGCATGTACTAAATATAGGGCAAACCTCATTACC----------CATTCTTACTTGTTTAT---AAACTTTTTTA
CATCAAAATAATTCATCTTGTAGTTAAATGTATTT--------------ACATTCAGTACTACTTTGCTGAATAATAAAA
TACTAGGTATAATTAGCAAAATTATCAATGTAAACACACTTGTATATTATGTTAATATACTTATTATTACACAATCATTT
GTTGGTGCTTACCTA-----------------------------------------------------------------
--------------AGTTTGTATATTTTGTCACAATTTTCTTATTTAGTTCAAGATAATTAAGAAACTATGTTGTTAATT
ATAGTGGATTTTCGTTATAAATCTTAGCAAATATATATTTCAAATTATGATTTCATATGGTGCTTTCTTGTATAGTTAAA
TATCGCAGAGAGTATGGATCTAGCAATCTAGCAAATAACTCAAAAGATGTTTCTAGGGTATAGGACTATCAAGCTTAGAT
GGAATTAAAATAGATAATTCTCAATGGTATGTGTCTACTACTCCCACCG------TTCCACAATGTAGTGTGTATAGA-T
TTCTTTAAAGTCAAACTTTATAAATTTTAACCAAGTTTAT--AGAGAAAAA-CCCTATACATCTAGGAAACCAAAATACA
TAT-ATTACATACATCATAAGACGTATTTTCCTGTTGTACAT-ATTTGGCTGATTTTTCAAAAAAATCTATATGCACTAC
ATTATGAAACAAATGGAGCAGTAATTTGTCCTTGAATATCGTCTTCTGTTCTCGGTTTGTGGGGCCATCAACGCATCAAT
CGCTATGGCTTTTATCAACAGTACTTTGATTAATCTGCATAAGTGGAGCAGAGCAAGGAGAGGGGGGATCTCAAAGTCTC
GCCA------TCTACAAGGGGTCGGGGTGCCGTGTAGGTTA-----CCACATGGCACAATCCGGGCACGACCTTATCCCA
GTCATTTTCCTGTGAAAATATTTTTATTGCCGATGGAAATAGCTGCAATTTTTATGTAAAACGATAGTACCCATGTTGTT
CCTTGGCACGGTGAGATAACCCAG----TGAATGATGTAGGTAGCA----CATCATAGAATGAGTTGAGTTGATGATGAT
ACATAAATAGTGGAGCCGAGTGAATGTGTATGTACGCACACATGCACGTTGCAGCCGTGGACAAGACGAGGATGGGATGA
TGTGTTTATGGACCATATGTATCAGGGGAGGAGAGGACAGTAGGACATGGGTGGATATATGGACGAGATGCAAGCAAATG
GACCTCATCTCATCCGGATGGAGAGGCGGCAGCCAATCAGGCGCCGGCATCCAGATTTGGTTACCGTTCATCCTCACCAC
CCAATCCTCCGACTCTTGTGG-------ATATAAAAGCAACCAACCAGCACCTTGCCCCGTCTAGCTCTATCTATCTACC
TACGT----ACTCTTTCCCA--------CTTAGCTAGCT-----------AGCAGCCATGGCCGCCCTCTCCTCTGCAGC
CGTGTCCGTCCCTTCCTTCGCCGCCGGCGCCAAGGTGGCCGCTCCCCGG---AGCAGCAGGATGGTGGTGCGCGCGTCCC
TGGGCAAGAAGGCCGCCAGCGCGGCCGTGGCCATGGCCGCGAGCGCGATGCTGCTGGGCGGGTCGGCGATGGCGCAGGAC
GTGCTCCTGGGCGCCAACGGCGGCGTGCTGGTGTTCGAGCCCAACGACTTCAGCGTCAAGGCCGGCGAGACCATCACCTT
CAAGAACAACGCCGGGTACCCGCACAACGTGGTGTTCGACGAGGACGCGGTGCCCTCCGGCGTCGACGTCTCCAAGATCT
CCCAGGAGGAGTACCTCAACGCCCCCGGGGAGACCTTCTCCGTCACGCTCACCGTCCCCGGCACCTACGGCTTCTACTGC
GAGCCCCACGCCGGAGCCGGCATGGTCGGCAAGGTCACCGTCAACTAAGCTGTCATCTAGCTCTTGCGAATTGTTGCGGG
TCGGTTGATC-------------------GATCGGGC--GTGTCATGCATGCATATTGATTAATTGTACGTACGTACGCT
ATATGTATATGTTTTCAACTA------TAAGATGAGATGAGGCTCTTGATGATAAGTACGCACTCCTTCTTAGCTTTGAT
TTGATTGATGATCTA-----------------------------------------------------------------
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>chr4A_69
CCATT---------------------------------------------------------------------------
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---------------------------------------------------------CCACAATGTAGCGTGTGTAGATT
TTTTTA-AAGTCAAACTTTATAAATTTTAACCAAGTTTAT--AGAGAAAAAAACCTATACATCTATAATACCAAAATACA
TATCATTACATACATTACAAGACGTATTTTCATGTTGTACAT-TTTTGGCTGACTTTT-AAAAAAATATATATGCACTAC
ATTATGAAATAGGGAGAGTAGTAATTTGCCCTTGAATATCGTCTTCTATTCTCGGTT---GGGGCCATCAACACATTGAT
TGCTATGACTTTTATTAACAC----TTGATTAATCTGCATAAGTGGATCAGAGCAAGGAGAGGGGGGATCTCAAAGTCTC
ACGG------TCTACAAGGGGTCGGGGTGCCGTGTAGATTT-----CCACATGGCACAATCCAGGCACGACCTTATCCCA
GTCATTTTCTTGTGAAAATATTTTGATTGCCAATGGAAATAGCCGCAATCTTTATCTAAAACGATA---CCCATGTTGTT
CCTGTGCGCGATAAGATAACCCAG----TCAATGATGGAGGTAG----TGTATCATAGAATGAGTTGAGTTAATGATGAT
ATATAA-TAGTGGAGTCGAGTGAATGTATATATACACACAC------GTTGCAGCCATTTACATGACAAGGATGGAATGA
TGTGTTTGTGGACCA-----------------------------------------------------------------
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>SNPs
SS-S----------------------------------------------------------------------------
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-------------------------------------------S-----SSSSSS---------------------S---
---S-S-----------------------SS---------SS--------------------------------------
-------------------------------S----S---S------------S--------------------------
---S----------S-----S---------------------------------------------------------S-
--------------------------------S-----------------------------------------------
---------------------S-----------S-------SSSSS----------------------------------
------------S--------------------------------S-------------------------S--------
---------------------S--SSSS------------------SS--------------------------------
--------------------------------------------------------------------------------
--SS--------------------------S--SSS-SSSSSS-------------S---------S-------------
---------------------S----SS----------------------------------------------------
---------S-------S-SSSSSSSSS----------------------------------------------------
--------------------S---SSS---SSSSSSSSSSSSSSSSSSSS---------------S--------------
----------------------------------------------S-SSSS--------------------------S-
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----------------------------------------------S--------S------------------------
------------------------------------------------SSS-S--SSSSS--SS--S-------------
----S-------S----------S---------------------------------------------S----------
---------------------SSSSSS-----------------------S-----S-----------------------
-----------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_2683
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-----------------------AACCACTCCCACTTGCTAGC-------------------------------------
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>reverse_3800
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---------------------------------------ACGAGCTCCTCAACAGTGTG---------------------
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