>input_sequence_79500
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----------ATGGCAACCGCCACCGCCACCGCCGCGGCCG------CCCCTTCCACCTCCTCGTCGCTCCTCCTCCGCC
GACCCCTCCCTCCAAATTCCACGGCCGCGCGCTGCCTCGCGCCACCACGGTGCCGCGCGCGCCTCCGCACCGCGCGCCAG
GTCGCCGTCAGCAGCGTGTCCCCATCCCCGTCCCCCGACGTGGCGGACGAGGAGGCCGCGGCCGCGCCCAAGCTCGGCAA
GCGCGTGCGCGTCACGGCGCCGGTCCGCGTCTACCACGTCCCCAAGGCGCCGGACCTGGACCTCCGCGGCAAGGAAGGTG
TGGTCAAGCAGTATGTCGGTGTCTGGAAGGGCAAGCGCATCACGGCCAATCGCCCTTTCCGGGTGGAGTTCGAGCTCAAG
CTGGACGGACAGGACAAGCCGGTCAGGTTCCTCGCTCACCTCCGGGAGGACGAGTTCGAGTTCGTCAGAGACGAATAG--
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>chr2B_1_TraesCS2B01G390900
AACGGCTGTGGGGCAAAGGCAGGGTACTGTAGCTGTCTACCTTGCCCATGGCAACGTAGAGAATCCGTGCCCAGTTCAAA
GTGGCTGCCAACAGATGGATATGATATAAAAATCTACGTCGACAGCGGCATCTCCAGAAGTGCGACCCGCGGTTGTTGAT
GCTGGGATAGGCATGGCCTCTTCCTAGGGGCATTTGTGGTTGTCTACGAAGGCCTAGTCAAACCGGCAACACTTGAAGCT
TAGGCATGTAGCGAGGCTCTATCCCTCGCCACGGATCCTCACGTCAACTCTATATGCATTGCGTCTGACTCATCTGAAGT
GGTGGCGAACATTCAGACTTGTGCTCTGTGTAGATATGCCGCTATTCTTCGCGAAATAAATCACCGACGGGGATTGTTTT
GAGCAACCAAGGTTATCCATGAAAAGCGGGAGCACAATGTAGAAAGTCGTTCTTTGGCTAAGGCTGCTACTTCACTTTCT
TTCGGGCGTCATGTGTGGCTTTCTGTCTTGCCCGATATCATGTGTATACCTATGAACATCGCTTAATAAAGGTCTACAGT
TTTTCTCAGAAAAAAGGTACGTGTTACATTATTATGCCTGAAAAAAATCCTGCTGCCGTATGTGATGTTACGGTACGCGA
AACATAAAAAACAGAACATCGCGCGTAGTTTTTCTTTTTTACGGTACCACGCGCTGCTTGCTGTCCGCCAATGGGCCGGC
CCAGTTGGGTCGCCCTATGTGCGTCCCGCTG-------------------------------------AGCGGCACATAG
GGACTCCCGCCTGGTCCTGAGCTGTG------TGATGATCAGATGGCCCTTGGAATGCGTAGGGG-TCACTAGCGCATCG
CTTTTCCTTTTTCTTT---TGACAAACCAACCACACCTCGCGAGAATTTCCACGCCTCTTCCCAATCACCATCACT---T
CCACCTTCGGCGCCGCGTATCTCACCTTCACGTGCACACCGCCTGCTCGACGCAATTCCCCACACGCCCGCCAACTCACC
AACCTCCCCGATGGCAACCGCCACCGCCACCGCCGCGGCCG------CCCCTTCCACCTCCTCGTCGCTCCTCCTCCGCC
GACCCCTCCCTCCAAATTCCACGGCCGCGCGCTGCCTCGCGCCACCACGGTGCCGCGCGCGCCTCCGCACCGCGCGCCAG
GTCGCCGTCAGCAGCGTGTCCCCATCCCCGTCCCCCGACGTGGCGGACGAGGAGGCCGCGGCCGCGCCCAAGCTCGGCAA
GCGCGTGCGCGTCACGGCGCCGGTCCGCGTCTACCACGTCCCCAAGGCGCCGGACCTGGACCTCCGCGGCAAGGAAGGTG
TGGTCAAGCAGTATGTCGGTGTCTGGAAGGGCAAGCGCATCACGGCCAATCGCCCTTTCCGGGTGGAGTTCGAGCTCAAG
CTGGACGGACAGGACAAGCCGGTCAGGTTCCTCGCTCACCTCCGGGAGGACGAGTTCGAGTTCGTCAGAGACGAATAGGA
TCCCTCTGCTTGTCTGTAAAATAATGCGCTCTTGGGGG---------GCGGATGCAGCATATGTACATTAGAGAGGAGAT
TGGAGAGGGGGCGAGGAGATGTCAAGTAAGTTGATGTTTGTTTACTTGTCATGTCTCATGTGCTCTTCCTCACTCCCCTG
CTCAGTGCTCAACATCACAATTTTCAGATGTGAGAGTTGTTCGAGATGATGACGATTATGAACCAAAGCAATTATACTGC
TGAATCTGTTGTTGTGTTCAATAGGTTTCTCTGTTTACTGTTGGATGCTACGC---------------------------
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--------------------------------------------TGAATATGCTAGTTCTACTAAAACTGCCCCCTCAAC
CCTTTACATTGGGATTCAAGAGCCTTCACTATGTTGATATCTTCTGATGAAGTTTAGTGTGTCTAAAGTTTATCTGATTC
ACTATGTTAATCCATGGGCAGGCAGAACTTTATCTGATTTGACTGGAAAATATGTCAAAATTTTCTGCATGCTGAACAAA
ATTAATTGCTTATTTGAATGCATATTGTAGCTGTTAAAATTGAATATACAGTGATCCCACTTTCTAAGGCATTTTTAGGT
TAGCTTTCCAAACCCAAATTAGAAAGGAGGCCATCTTGCTAACAACATGAAATTGAAGACATCGATAGAAAGCTTTCTGA
ACAGCGTTGGTGTCTTGGTGAGATATATGCAAATTATTTTCACACGGACCTTCAGGATTGTACCCCGAGCTAGCACAAAC
ACAAAAGAAAAAGAAACCAACGCTGTGA---------------------GAGACATGTCACTCCTTACTGCAAACAATAT
ATATTTT----CAGCTTAGTGTTAATAATCTTCCAGAGATTTAAACCTTGTCCAATTCACACGTGAAAAGA--GTACATG
CTGTGATTGTTAATGTTATGTGCTCAGTCTGAATTTAAGGTCATCATTTTGTTTAAGCTCTTGTCCTTCCATCCATGGG-
GGTATCTAGTGCAAACTAGTATGTCAATGCCAACTCCTCATTTGAGTAGTTGATTGTGCAGATTTG
>chr2D_680
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---------------------------------------TACAGTACCACGCGCTGCTTGCTGTCCGCCAATGGGCCGGC
CCAGTTGGGTCGCCCTATGCGCGTCCCGCTGCTCCAGGACGCACTGAGCGGGACCCCTCAAAAAAAAGAGCGGCACATAG
GCACTGCCGCCTGGTCCAGCTGTGTGATGAACTGATGATCAGATGGCCCTTGGAATGCGTAGGGGGTCACTAGCGCATCG
TTTTTCCTTTTTCATT---TGACAAACCAACCACGCCTCGCGAGAATTTCCACGCCTCTCCCCAATCGCCGTCGCT---T
CCACCTTCGGCGCCGCGTATCTCACCCTCACGTGCACACCGCCTGCTCGACGCAATTCCCCACACGCCCGCGAGCACACC
AACCTCCCCGATGGCAACCGCCACCGCCACCGCCGGGGC------GTCCCCTTCCACCTCCTCGTCGCTCCTCCTCCGTC
GACCCCTCCCTCCAAATTCCACGGCCGCGCGCTGCCTCGCGCCACCGCGGTGCCGCGCGCGCCTCCGCACCGCGCGCCAG
GTCGCCATCAGCAGCGTGTCCCCA------TCCCCCGACGTGGCGGACGAGGAGGCCGCGGCGGCGCCCAAGCTCGGCAA
GCGCGTGCGCGTCACGGCGCCGGTCCGCGTCTACCACGTCCCCAAGGCGCCGGACCTGAACCTCCGCGGCAGGGAAGGTG
TGGTCAAGCAGTATGTCGGTGTCTGGAAGGGCAAGCGCATCACGGCCAATCGCCCTTTCCGGGTGGAGTTCCAGCTGAAG
CTCGACGGACAGGACAAGCCTGTCCGGTTCTTCGCTCACCTCCGGGAGGACGAGTTCGAGTTCGTCAGAGACGAATAGGA
TCCCTCTGTTTGTCTGTAAAATAATGC----------G---------GCGGATGCAGCATATGTACATTAGAGAGGAGAT
TGGAGAGGGGGCGAGGAGATGTCAAGTAAGTTGATGTTTGTTTACTA-TCATGTCTCCTGTGCTCTTCCTCACTCTCCTG
CTCAGTGCTCAACATCAAAATTTTCAGATGTGAGAGTTGTTCGAGATGATGACGATTATGAACGAAAGCAATTATACTGC
TGAATCTGTTCTTGTGTTCAATACTTTTCTCTGTTTACTGTTTCAAGAAAAAATGTTGTTGGAGAGCAGTCAGTGTTAAT
GAGTTAACAATGGATACC-ATCTGTCTAATGGGTGGTAAGTATGTGCTTAATAGGAACAGAAGGTATCATACACTGGTAT
ATTGAATTCAACATGTACCCCTGCCCTGAATCATCATATAAGGGAGTGCGTAGGCACTATGGAACATTGAGAATCATTCA
AAGTATCATGAAAATCACTGAAATTGGATGGGTATGCTGCCAATTGAATATGCTAATTCTACTAAAACTGACC-------
--TTTACTTTGGG-TTCAAGAGCCTTCACTGTGTTGATATCTTCTGATGAAGTTTAGCTTCTCACTAC------------
-----------CCATGGGCAGGAAGAATTTTATGTGATTTGACTGGAAAATATGTCAAAATTTTCGGCATGCTGAACAAA
ATTAAATGCTTATTTGAATGTGTATTGTAGCTGTTAAAAATAAATAAATAGTGATCCCGGGCAT-------TTTTTAGGT
TAGCTTTCGAAACTCAAATTAGAAAAG---------------------------------------------CTGTCTGA
ACAGCGTTGG--------TGAGATATATTCAAATTATTTTCATACGGACCTTCAGGATCGTACCCCGAGCTAGCACAAAC
ACAAAAGTAAAAGAGTTA-------------------------TTTCTTGATATATGTCAATCCTTACGGCAA----ACG
ATATTTTTCTTCAGCTTGGTGTTAATAATCTTCTAGAGATTTAAACCTTGTCCAGTTCACACATGAAAAGAATGTACATG
C------TGTTTTTGTTATGTACCCAGTTCGAATTTAAGGCGTTCATCTTATTTGAGCTTTTGTCCTTCCATCCATGGGT
GGTATCTAGTGCAAACTAGTATGTAAATGCCAACT------TTGAGTAGGTGATTGTTCAGACTTG
>chr2A_789
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-------------------------G------TGATGATCAGATGTCCCTTGGAATGTGTAGGGG-TCACTAGCGCATAG
CTTTTCCTTTTTCATCATCTGACAAACCAACCACACCTCGCGAGAATTTCCACGCCTCTCCCGAATCGCCATCACTTCCT
CCACCTTCGGCGCCGCGTATCTCACCTTCACGTGCACACCGCCTGCTCGACGCAATTCCCCACACGCCCGCGAGCACACC
AACCTCCCCGATGGCAACCGCCACCGCCACCGCCACCGCCGCGGCGTCCCCTTCCACCTCCTCCTCGTTCCTCCTCCGCC
GACCCCTCCCTCCAAATCCCACGGCCGCGCGCTGCCTCGCGCCACCGCGGTGCCGCGCGGGCCTCCGCACCGCGCGCCAG
GTCGCCGTCAGCAGCGTGTCCCCGTCCCCGTCCCCCGACGTGGCGGACGAGGAGGCCGCGGCGGCGCCCAAGCTCGGCAA
GCGCGTGTGCGTCACGGCGCCGGTCCGCGTCTACCACGTCCCCAAGGCGCCGGACCTGGACCTCCGCGGCATGGAAGGTG
TGGTCAAACAGTATGTCGGTGTCTGGAAGGGCAAGCGCATCACGGCCAATCGCCCTTTCCGGGTGGAGTTCGAGCTGAAG
CTCGACGGACAGGACAAGCCGGTCCGGTTCTTCGCTCACCTCCGGGAGGACGAGTTCGAGTTCGTCAGAGACGAATAGGA
TCCCTCTGTTTGTCTGTAAAATAATGC----------GCGCTTGGGGGCGGATGCAGCATATGTACATTAGAGAGGAGAC
TGAAGA-GGGGCGACGAGATGTCAAGTAAGTTGATGTTTGTTTACTTGTCATGTCTCCTGTGC---TCCTCACTCTCCTG
CCCAGTGCTCAACATCTAAATTTTCAGATGTGAGAGTTGTTCGAGATGATGAAGATTATGAACCAAAGCAATTATACTGC
TGTATCTGTTGTTGTGTTCAATAGTTTTATCTGTTTACTCTTTCAAGAAAAGATATTGTTCGAGAGGAGTCAGTGGTAAT
GAGTTAACGATGGATACCGATCTGTCTAAAGGGTGGTAAGTATGTGCTTAATAGGAGCAGAAGATATCATATACTGGTAT
ACTGAATTCAACATGTACTCCTGCACTGAATCATTATTTAAGGGAATATGTAGGCACTATGGAACACTCTGAATCATTCA
AAGTATCATGAAAATCACTGAAAATGGATG-GTACGCTGCCAATTGAATATGCTAGTTCTACTAAAACTGCCCCCTTAAT
CCTTTACTTTGGGAT-CAAGAGCCTTCACCATGTTGATATCTTCTGATGAAGTTTAGTGTGTCGAAATTTTATCTGATTC
ACTATGTTAATCCATGGGCAGGCATAACTTTATCTGATTTGACTGGAAAATATGTCAAAATTTTCTGCATGCTGAACAAA
ATTAATTGCTTATTTGAATGCATACTGTAGCTGTTAAAACTGAATATACGGTGATCCCACTTTCTAAGGCACTTTTAGGT
TAGCTTTCCAAACCCAAATTATAAAAGAAGCTGTCTTGCTAACAAGATGAAATTGAAGACATTGACAGAAAGCTTTCTGA
ACAGCGTTGA--------TGAGATATATGCAAATTATTTTCACACGGACCTTCAGGATGGTACCCCGAGCTAGCACAAAC
ATAAAGAAAAAGAAAAAAATAGTACACACTGTAGGCTCTATTCTTTCTTGATACATGTCGCTCCTTACTGCAA----TAT
ATATTTT----CAGCTTAGTGTTAATAATCTTCCAGAGATTTAAACCTTGTCCAGTTCACGCGCGCAAAGA--GTAAATG
C------TATGATTGTTATGTGCTCAGTCTGAATTTAAGGCCTTCATGTTGTTTAAGCTCTTGTCCTTCCATCCACGGGG
GATATCTAGTGCAAACTAGTACGTCATTGCTAACTCCTCATTTGAGTAGTTGATTGTTCATATTT-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------------------------------------
-------------------S------------------------------------------------------------
-S---S-----------S-SSS----------------------------------------------------------
-------------S---------------------------------------------S-------S------------
-----------------------------------------------------------------------S-S-S----
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----------------------------------------------S---------------------------------
--------------------------------------------------------------S-----------------
-----------------------------------------------------------------------S--------
----------------------------------------------------------------------------S---
--S---------------------S-----S-------------------------------------------------
--------S------------------SSSSSSSSSS-------------------------------------------
---------------------------------------------------------S-----------------S----
-----------------S--------------------------------------------------------------
------------------------S-----------------SS-S-SS-S-S---------------------------
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----------------------------------------------------------------------------S--S
-------S-------------------------------------------------------S---S------------
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---------------------------------------S----------------------------------------
-------------------------S--S--SS------------S----------------S--S--------------
----------SSSSSSSS----------------------------------------S---------------------
----------------SS-SS-SSSSS------------------------S---------------------SSSS---
------------------------------------------------------S-------------------------
-SSSSSS-----S---------------------------S-S----S--------------------------------
---------------------------------------------------------S--------
>forward_214
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----------------------------------TGTGGTTGTCTACGAAGGCC--------------------------
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>reverse_1352
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-----------------------------------------------------------------------AGGAAGGTG
TGGTCAAGCAG---------------------------------------------------------------------
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>forward_327
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-------------------------------------------------------------------ACTCATCTGAAGT
GGTGGCG-------------------------------------------------------------------------
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>reverse_1557
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------------------------------------GGGCGGATGCAGCATATGTA------------------------
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