>input_sequence_79479
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-------------------------------------------------ATGGCCGACTACCACCGCCCCTACCAGCGCG
ACCTCCGTCCCCCGCCGTCCTCGGCCCCGGACCCCACCATCTTCCACGGCAATGGTTACTTCTCCTCTGTCGCCCCCCAA
GCCAACGCATACTTCTCCTCCGCGCCGAAAGACGGCGCTTTCCCCGGCGCAGGCGACCGGCGGATCGAGATCTACACGAA
GGCGCCTCCGCCTCTCCCCCCGCCTCCGCGCCTCGCACTGCCCCCGCCCCCGGGGAGGAGGGAAGGTGGCGTGGGGAGCG
GCGGCAGCGGAGGGGGAGGTGGGGGTGGTGGAAGCGCCAACATATGGTGCTTCAGCGACCCGGAGATGAAGCGGCGGCGG
CGGGTGGCGAGCTACAAGGCCTACTCAGTGGAAGGGAAAGTGAAGTCCTCGCTGCGGAGGGGCCTCCGCTGGTTCAAAGG
CAAGTGCTCCGATATCTTCCACAGCTGGTAA-------------------------------------------------
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>chr1A_1_TraesCS1A01G226600
TGGGTTCGACACT----CTTATTGAAAGGACTACGATTGATCCCATATACTTGTGGGTCATCATATCTTCACAGTTCTTG
CTTTCTTTAAGCACGAGGTCTTACTTGTTCTCGGTTGCACACATGGACTAGGTCTTCATGGTTAGGTGGTGTGCATCCAA
TATTGTCGGTAACCTTTAAGTGAAATGGTCTGGTGACTGTTAATGCGTGTTGTCCCATGTCTGACGTACGATGTAGTCGG
GTCGTCAAAGTTGATCTCCATCCAATGCAAAGGAGTGTTTC-CTTTAAATGACTAGGACACTCAAGGTGCGTATCACCAA
ATTAAAATCCTATATGTTTTTTTTATTGAGGGATTGATATACAGGAAAAAAAAAGATTTCATACATGGGAAAGAAACCAA
AATTCTTGTAGCTTCCACTTCTTTCCCTTTCTCATGCATACTCTCATGTCCCTTCCAATAAACCA-TTTCTTGAAACCCC
ATCTTCTACCAATGTTTCATCTTTATTTGTACATCTTACCTTACTATTTTTTATAGTTCGTTGTCCTCGATTGCATGCAT
GAATTAGACCTTCGTGATTAAATTGACCATGCCGTAAACTTCAAGATATTGAGTTAGTGACTGATTATCACTCGTGTCGT
CTAGTATCCAATGTAAGATGTAGTTGGATCGTCAAAGTCGATATCCATCCAACTTAAAGGAGTGCTTCTTGTTGAAAGGT
CAGAACCTCCAAGGTTTATATCATCAAGCCA-TATTAAAACTGTGACAAGTAATATGGATTAGAGGAAGTAGGAGTATAT
GATTTATCA--TTTTTTTGCCGAGGGGTTGAAATAAGAAAAATAAAGCTCCACATCCCGAAGGAAATGAATATTCTTTGG
TCTGTCCTCTTCTTTCCCTTTCTCCCACTGTCCTTCCAAACAAAAAGCTAGACGACTATTCCGAATTTCCCCGGCACTCC
ATTTCCTCCCCATCTCCACCGCCACCACCTCCTCCTCCCGCTCCTCTCCATGGCCGACTACCACCGCCCCTACCAGCGCG
ACCTCCGTCCCCCGCCGTCCTCGGCCCCGGACCCCACCATCTTCCACGGCAATGGTTACTTCTCCTCTGTCGCCCCCCAA
GCCAACGCATACTTCTCCTCCGCGCCGAAAGACGGCGCTTTCCCCGGCGCAGGCGACCGGCGGATCGAGATCTACACGAA
GGCGCCTCCGCCTCTCCCCCCGCCTCCGCGCCTCGCACTGCCCCCGCCCCCGGGGAGGAGGGAAGGTGGCGTGGGGAGCG
GCGGCAGCGGAGGGGGAGGTGGGGGTGGTGGAAGCGCCAACATATGGTGCTTCAGCGACCCGGAGATGAAGCGGCGGCGG
CGGGTGGCGAGCTACAAGGCCTACTCAGTGGAAGGGAAAGTGAAGTCCTCGCTGCGGAGGGGCCTCCGCTGGTTCAAAGG
CAAGTGCTCCGATATCTTCCACAGCTGGTAACCTCTTCTGCTCGGACGGTGACAGGGTCCCAAGAAACGCAAGCTCCTGA
AAAATGTCTGCATTTTGGAATCTTTTGTTTGAAGGTAATGTTCAGAATAATTCCTCTACCACTAATTGAATGCATTTGAG
GTTGTGATTGTATATTGGTGAGCTAATGGAGGCTTAGAGGAACTTGCGACGGGCGTGAATTCATGAAATGTTTGTGATGT
GTCGTATTCGCGCCTCTGTAGATTTATCTGCAAGCGGTGGTGGTGATTAGTCATGTTACCCATATCTGTTACTAATAAAA
CACAAGGGCTGTGTGGGCAAATGTATCTTTTTAGTGGTTATGATTATTTGTTGGGAGATTGGTTTTCAATCAGATTCAGG
AATCATGGAAATACCTACGTTTTTTTTTTGTACTCTTTCACTATGAATGCTGAATTGTCAGTGGTACCATTTTATCTTGT
GGTTTGAATGGCTGGTGAAGTGTGTGGTACTACTATCCATTGGAGTGGGTGTTCTGGTAGGAGGGATTGAAGTGCAATAA
ATTCTTTCAGACGAGTACGGATTGGGTACATTGATGAACTTCCATCTGAAATTAATAAACAGAAGGACATATGAGACTGA
ACACCCCC-ACTGATTGGCTCAAAATTGTTGCAAATAGTTGCTAATTACCTAATCACATATTCACTGGTAGTCTGATAAC
TAACGCCACCTATTTGAACATAGTTTGGTCCAGTATTTTTGAGAAAATATGAAGTTATCCTGTGGTTGGTGTGACATGTT
GACAACCAAACCATGCCACATTATTATTGGCTTGATTATGTTGTTTGACAACCCTTTGTTTGTTTCAACTCTACGTTCCG
TGTGGCATGGTTTGGTTCACCAAACTTCCTTATGTTTGTCAACATAATGAAGCCAATATTTGTTCATATAGATGTGTTGA
TGACCTACCTTTGGTCTTTATGATACAAATTATCATATCAGCCCCTTTGGTCCTTATGATAGTAACATAATT
>chr1D_1
TGGGTTTGACACTCTTACTTATTGAAAGGACTACGATTGATCCCATATACTTATAGGTCATCATATCTTCACAGTTCTTG
CTTTCTTTAAGCACGAGGTCTTACTTGTTCTCGGTTGCACACATGGACTAGGTCTTCATGGTTAGCTGGCGTGCATCCGA
TATTGTCGGTAACCTTTAAGTGAAATGGCTTGGTGACTGCTAATGCGTGTCGTCTCATGTCCGACGTACGATGTAGTCGG
ATCGTCAAAGTTGATCTCCATCCAATGCAAAGGAGTGTTTCCCTTTAAATGACTAGGACACTCGAGGTGTGTATCACCAA
ATTAAAATCCTATATGTTTTTTTTACCGAGGGATTGATATACAGGAAAAAAA--GATTTCATACATGGGAAGGAAACCAA
AATTCTTGTAGCTTCCACTTCTTTCCCTTTCTCATGCATACTCTCATGTCCCTTGCAACAAACCA-TTTTTTGGAACCCC
ACCTTCTACCAATGTTTCATCTTTATTTATACATTTTAGCTTACTATTTTTTATAATTCGTTGTCCTCGACTGCATGCAT
GAACTAGACCTCCATGGTTAAATTAACCGTGCCGTAAACTTTAAGAGATTGACTTAGTGACTGATTATCAGTAGCGTTGT
CTACTGTCCAATGTAGGATGTAGTTGAGTCGTCAAAGTCGATACCCATCCAACTTCAAGGAGTGCTTATTGTTGAAAGGT
CAGAACTTCCAAGGTTTATATCACCAAGTCACTATTAAAACTGCGACAAGTAATATGGACTAGAGGAAGTA------TAT
GGTTTTTCACTTTTTTTTGCCGAGGGATTGAAATAAGAAAAATAAAACTCCACATCCCGAAGGAAATGAAAATTCTT-GG
TGTGTCCTCTTCTTTCCCTTTCTCCCACTGTCCTTCCAAACAAAAAGCTAAACGACTATTCCGAATTCCCCCAACACTCC
ATTTCCTCCCCATCTCCACCGCCACCACCACCTCCTCCCGCTCCTCTCCATGGCCGACTACCACCGCCCCTACCAGCGCG
ACCTCCGTCCCCCGCCGTCCTCGGCCCCGGACCCCACCATCTTCCACGGCAATGGTTACTTCTCCTCCGTCGCCCCCCAA
GCCAACGCATACTTCTCCTCCGCGCAGAAAGACGGCGCTTTCCCCGGCGCAGGCGACCGGCGGATCGAGATCTACACGAC
GGCGCCTCCGCCTCTCCCCCCGCCTCCGCGCCTCGCACTGCCCCCGCCTCCGGGGAGGAGGGAAGGTGGCGTGGGGAGCG
GCGGCAGCGGAGGGGGAGGTGGGGGCGGTGGAAGCGCCAACATGTGGTGCTTCAGCGACCCGGAGATGAAGCGGCGGCGG
CGGGTGGCGAGCTACAAGGCTTACTCAGTGGAAGGGAAAGTGAAGTCCTCGCTGCGGAGGGGCCTCCGCTGGTTCAAGGG
CAAGTGCTCCGATATCTTCCACGGCTGGTAACCTCTTCTGCTCGGACGGTGACAGGGTCCCAAGAAACCTAAGCTCCTGA
AAAATGTCTGCATTTTGGAATCTTTTGTTTGAAGGTAATGTTCAGAATAATTCCTCTACCACTAATTGAATGCATTTGAG
GTTGTGATTGTATATTGGTGAGCTAATGGAGGCTTAGAGGAACTTGCGACGGGTGTGAATTCATGAAATGTTTGTGATGT
GTCGTATTTGCACCTCTGTAGATTTATCTGCAAGCGGTGGTGGTGATTAGTCATGTTACCCATATCTGTTACTAATAAAA
CACAAGGGCTGTGTGGGCAAATGTATCTTTTTAGTGGTTATGATTATTTGTTGGGAGATTGGTTTTCAATCAGATTCAGG
AATCATGGAAATACCTACGTTTTTTTTTTGTACTCTATCACTATGAATGCTGAATTGTCAGTGGTACCATTTTATCTTGT
GGTTTGAATGGCTGGTGAAGTGTGTGGTACTACTATCTATTGGAGTGGGTGTTCCGGTAGGAGGGATTGAAGTGCAATAA
ATTCTTTCAGACAAGTACGGATTAGGTACATTGATGAACTTCCATCTGAAATTAATAAACAGAAGGACATATGAGACTGA
ACACCCCC-ACTGATTGGCTCAAAATTGTTGCAAACAGTTGCTGATTACCTAATCACATATTCACTGGTAGTCTGATAAC
TAACGTCACCTATTTGAACATAGTTTGGTCCAGTATTTTTTAGAAAATATGAAGTTATCCTGTGGTTGGTGTGACATGTT
GACAACCAAACCATGCCACATTATTATTGGCTTGATTATGTTGTTTGACAACCCTTTGTTTGTTTCAACTCTACGTTCGG
TGTGGCACTGTTTGGTTCACCAAACTTCCTTATGTTTGTCAACATAATGAAGCCAATATTTGTTCATATAGATGTGTTGA
TGACCTACCTTTGGTCTTTATGATACAAAT------------------------------------------
>chr1B_61
----------------------------------------------------------------ATCTTCATAGTTCTCA
CTCTCTTTAAGCGCGAGTTCTTACTTGTTCTCGGTTGCACACATGAACTAGGTCTTCATGGTTAGGTAGTGTGCCTCTAA
CATTGCCGATAACCTTTAAGTGAAATGGCTTGGTGACTGCTAATGCATGTCGATTCATGTCGGATGTACAATGTAGTCGG
GTCATCAAAGTTGATCTTCATCCAATGCAAAGGAGTGTTTCCCCTTTAAAGACCGGGACACTCAAGGTGCATATCACCAA
ACTAAAATTCTACT--TTTTTTTTGCCGAGGGATTGATATACAGAAAAAAAAAGATGTCACATACGGGGAAGGAAACCAA
AATTCTTGCGGCTTCTACTTCTTTCAGTTTCTCATGCATACTCTCATGTCCCTTACAACAAACCCCTTTTTTGGAACCCC
ACCTTCTACTAATATTTCATCTTTATTTGTACATTTTAGCTTACTATTTT-TATAGTTCGTGGTCCTCGATTGCATGCAT
GAACTAGACCTTCGTGGTTA---------------AAACTTCAAGAGATTGACTTAGTGACTGATTATCAATAGTGTTGT
CTACTGTCCAATGTAAGATGTAGTTGAGTCGTCAAAGTCGATACCGATCCAACTTGAAGGAGTGCTTCTTGTTGAAAGGT
CAGAACTTCCAAGGTTTATATCACCAAGCCACTATTAGAACTGAGACAAATAATATGGATTAGAGGAACTA------TAT
GATTTATTAAA-TTTTTTGCTGAGGGATTGAAATAAGAAATAC-AAACTCCACATCCGGAAGGAAATGAAAATTCTT-GG
TATGTCCTCTTCTTTCCCTTTCTCCCACTGTCCTTCCAAACAAAAAGCTAAACGACTATTCCGAATTTCCCCAGCACTCC
ATTTCCTCCCCATCTCCTCCGCCACCACCTCCTCCTCCCGCTCCTCTCCATGGCCGACTACCACCGCCCCTACCAGCGCG
GCCTCCGTCCCCCGCCGTCCTCGGCCCCAGACCCCACCATCTTCCACGGCAATGGTTACTTCTCCTCCGTCGCCCCCCAA
GCCAACGCATACTTCTCCTCCGCGCCGAAAGACGGCGCTTTCCCCGGCGCAGGCGACCGGCGGATCGAGATCTACACGAC
GGCGCCTCCGCCTCTCCCCCCGCCTCCGCGCCTCGCACTGCCTCCGCCTCCGGGGAGGAGGGAAGGTGGCGTGGGGAGCG
GCGGCAGCGGAGGGGGAGGCGGGGGTGGTGGAAGCGCCAACATGTGGTGCTTCAGCGACCCGGAGATGAAGCGGCGGCGG
CGGGTGGCGAGCTACAAGGCTTACTCAGTGGAAGGGAAAGTGAAGTCCTCGCTGCGGAGGGGCCTCCGCTGGTTCAAGGG
CAAGTGCTCCGATATCTTCCACGGCTGGTAACCTCTTCTGCTCGGACGGTGACAGGGTCCCAAGAAACCTAAGCTCCTG-
AAAATGTCTGCATTTTGGAATCTTTTGTTTGAAGGTAATGTTCAGAATAATTCCTCTACCACTAATTGAATGCATTTGAG
GTTGTGATTGTATATTGGTGAGCTAATGGAGGCTTAGAGGGACTTGCGACGGGTGTGAATTCATGAATTGTTTGTGATGT
GTCGTATTCGCACCTCTGTAGATTTATCTGCAAGCAGTGGTGGTGATTAGTCATGTTACCCATATCTGTTACTAATAAAA
CACAAGGGCTGTGTGGGCAAATGTATCTTTTTAGTGGTTATGATTATTTGTTGGGAGATTGGTTTTCAATCAGATTCAGA
AATCATGGAAATACCTACGTTTTTT----GTACTCTATCACTATGAATGCTGAATTGTCAGTGGTACCATTTTGTCTTGT
GGTTTGAATGGCTGTTGAAGTGTGTGGTACTACTATCCATTGGAGTGGGTGTTCCGGTAGGAGGGATTGAAGTGCAATAA
ATTCTTTCAGAAAAGTACGGATTAGGTACATTGATGAACTTCCATCTGAAATTAATAAACAGAAGGACATATGAGACTGA
ACACCCCCCACTGATTGGCTCAAAATTGTTGCAAATAGTTGCTGATTACCTAATCACATATTCACTGGTAGTCTGATAAC
TAACGTCACCAATTTGAACATAGTTTGGTCCAGTATTTTTTAGAAAATATGAAGTTATCCTGTGGTTGGTGTGACATGTT
GACAACCAAACCATGGCACATTATTATTGGCTTGATTATGTTGTTTGACAACCCTTTGTTTGTTTCAACTCTACGTTCGG
TGTGGCATGGTTTGGTTCACCAAACTTCCTTATGTTTGTCAACATAATGAAGCCAATATTTGTTCATATAGATGTGTTGA
TGACCTACCTTTGGTCTTTATGATACAAATTATCATATCAG-CCCTTTGGTCCTTATAATAGTAACATAATT
>SNPs
------S---------------------------------------------S-S-------------------------
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----------------------------SS---------S----------S---S------S------------------
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-------------------------SS--------------------------S-----------------S--------
------------------------------------------------------S---S----------S---S------
-S--------------------------------S---S-----------------------------------------
---S------------S-------S---S-----------------S-----S-----------------S-S----S--
---S-S--------------------SS---------------S-----------S------------------------
------S----------------S-------------------S---------------------------SSSSSS---
--------------------------S-------------------S-----------------------S------S--
-S------------------------------------------------S---------------------S-------
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-------------------------------------------------------------------S------------
-------------------------------------------------------------------------------S
------------------------------------------------S-------------------------------
-------------------------------------------S------------------------------------
--------------------S--------------------------------------------------------S--
----------------------S---------------------------------------------SS----------
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-----------------------------------------------------S--------------------------
-----------S--------------------------------------------------------------------
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------------------------------------S-------------------------------------------
------------------------------------------------------S-------------------------
------------S----------S--------------------------------------------------------
-------------------------------------------S------------------------------------
-----S----------------------------------S---------------------------------------
------------------------------------------------------------------------------S-
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-----------------------------------------S---------------S--------------
>forward_222
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------------------------------------------ATGCGTGTTGTCCCATGTCT------------------
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>reverse_1438
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-----------------------------------------------------------------------------AGG
CAAGTGCTCCGATATCT---------------------------------------------------------------
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>forward_1200
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-----------------------------------------------------------GCGGATCGAGATCTACACGAA
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>reverse_2319
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------------------------------------------------------------------------------CG
TGTGGCATGGTTTGGTTC--------------------------------------------------------------
------------------------------------------------------------------------
