>input_sequence_79473
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-----------------------------------------ATGGCGACGCTCCGATCCGCCCTCCGGCACCTTGCACCG
GCCGCTCGCTTCCTCAGCAAGG---------GCGGCAGCTCTGGGCCTAGCTTCACCGCCGTCAGGGTA-----------
---------------------------------ATTTTCTTTTACTGTGTTAAATACTCTCAATTCTGC--CCATCCGAT
CCCTTGTGATTTGCAGCGGAAGCATTCCACCGGCGGCGGCGTATTCTATAGTACGATACTGTGGGACGAACCCTTCGATT
TGTACGTGCCCTATCATATTCTTTTCCATCAAATGTGTGTCTACCTAGATTCGTCAGGTAACAGAGATTTGCTTTATGTT
TTCTGACGGTGGTTTGTCTGCAGGAGAACGCCGGTGACCTGGTTTGCAATCATCGCCACCGCCATAGGAGCTACTTACAG
GATAAAAGTGCAGACGACTGATCATGAAAAGCAGAAGGCATGTGGACACGAGGAGGGGAAGAAAAGTGTTAGCATCTGA-
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>chr5A_1_TraesCS5A01G474600
GCATATAAATTACCATGCTCTTTTTACAGACAAGTTATCTGGATGTGTTACAACAACGTTTTTTTTCTTCGGATCAAGAG
TTACCACAGTGTTTGTGAGTGAGTTATTAGATTCGTGACGTATAACTACCATGCTCTTTTATAGATAAGTTATCAAGGTG
TATTACAACAACTTCTTACCTAGGGTCAAAAAGTTACCATGGTGTGTGAGTTATTAGGTCTGTGATGCACGAATTACCGT
GTACAAAAGGGAAGCAAAAATGGTGAAAAATATGAAAGAAAAAAAGGCTTGTTTCTCTGGTCGCGTATGTAGCGGTACAA
ATATTTATCGACCTTCTTTGTAATAACAACTTGAAACCAGACCAGGTGGATACGACAAGCGATGATGGACCAAGAGGTAT
TGAGTTTGACTCCCACCTCCTACAATCTTTTTACCATGTTTTTTTAGCACGCCAGAAAATTAAAAAGGAAGCGAGAGAAG
TGGTGGGATCGAGCAGAGAAGGATGCGCGCCAGAAGAATCGGAGATCGCGGAAGGGACGAGAGAAGTGGACCACGGGAGG
ATCGTTCGGATCTGTCCCTAAAAGCAGATCGTTCGGACGTTAGTTGCGTCCATTTTAGAAACCCATAAGAACTTGATGAG
TGTACATTGTCAAGTTTTCAGAAGTTGGTCTTGATTTTGTGGAAGTCACCCCTGGAAATAGTTGGAGGGCTCACTTGAAA
TTTATGAACCCTTCACTAATTTTTTCCAGAGCTTTTTTTTTTTTTTGATCCACACGGCTCAGCTTCTGGACTTTTAATCG
GCTTCGTACTGGGAATCGGATCGGGAGTGCTGTGAATAACATGACCCGCAGCCAACCCGGAGATCCCCCAAACATAACCC
TACCCGGCAGCCAGCGCAACACGGTGGAGAGCAAGAGGCGATCCAAGCCGAGGAAGTTGCAGCCACCGCCGCATCGATCG
GCCTCCAGTCCTCAATTGGAGGGACCGCGTCAACC-GGGGGATGGCGACGCTCCGATCCGCCCTCCGGCACCTTGCACCG
GCCGCTCGCTTCCTCAGCAAGG---------GCGGCAGCTCTGGGCCTAGCTTCACCGCCGTCAGGGTA-----------
---------------------------------ATTTTCTTTTACTGTGTTAAATACTCTCAATTCTGC--CCATCCGAT
CCCTTGTGATTTGCAGCGGAAGCATTCCACCGGCGGCGGCGTATTCTATAGTACGATACTGTGGGACGAACCCTTCGATT
TGTACGTGCCCTATCATATTCTTTTCCATCAAATGTGTGTCTACCTAGATTCGTCAGGTAACAGAGATTTGCTTTATGTT
TTCTGACGGTGGTTTGTCTGCAGGAGAACGCCGGTGACCTGGTTTGCAATCATCGCCACCGCCATAGGAGCTACTTACAG
GATAAAAGTGCAGACGACTGATCATGAAAAGCAGAAGGCATGTGGACACGAGGAGGGGAAGAAAAGTGTTAGCATCTGAA
TTATCTGTGCTGTCTCCCTTTTAACTGAGAAGCATCAGTATCTTGGATAAACAG--------------------------
----GC-ATAAAGTTCAGTTGTATGCCAAACCGTGCTATGTTGGA-----------------------------------
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--------------------------TGGAACCTGCA-------TGTCCTGTGTGCGTATTTTGTACAATGAAAACCAAT
TTAGTTATTATGCATAA---ATTACAAGTAATTAACCTGTTAT--GACCCGATCCACCTGTGATTTCGTATCTGGGGATT
CCAATTCCAATGACAAGAGGAAGAATTGAAGAACTAGAACTTGG---------GAGTTGGGGTAGGAGAAGCATCGGAGA
GAAACACAGTACTCCCTCCGATCCATATTACTTTTCACTCAAACGGATTTATCTAGAGGGAGTAGCTTTG----------
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-------GAGAATTGGAGCACTA----------------------------------------AACAAATCCCATATTTT
CTGCGAGTTTGCTTGTATTCGTATGAACATTGTTCATCAACAATAAAGCTGCCGGC-GATCCTCAGAGGAAAAAGGAACG
ATAACAAAGGTGATCACATCTTTTTCCCCCTTCTGAGCGGCACAGG-GAGGAGTCATTGGTGAGATGAGAGAGAGCAAGA
TGGCGAATTATACGGGTCTACATGTTGTCTACGTAGTAG----GTACATCCGAGTAGCCGTATCTTTTCCCCTCTTCACT
TCCACTTGCGCCCGTACATCTTCTTGTGCTTGCCAAACTTGCCGTGCTTGAACTTGCCATGCTTGAACTTGCCGTGGTGG
TTACCGTGGCCGTACATCCCGTGGGCGCCGCCGTGCGACACCTTGTGAGCTCCATATACTGCGCCTGCCGCCACCGCGCC
GCCGGCAATCATGCCGCCTGCTACGCCATGGCCGCCTCCCCCGTACATAGGAGCGTGACCTGAACAAAATGGCTTGCAAG
TTGACTCGACCGATCGAGTTCATAACATGGTCATG------CCTCCATATGAACCATGAAGTGCCATCTTT---------
-TCACACCTGATTGCATTCTACTAGTACTTAACACTTTTGGACATGAACATGCATACTTGACGGTTCCCGT
>chr5B_612
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---------------------------------------------------ATTTTGGAAATCCATAAGAAGTTTATGAA
TGTTCATTGTCAAATTTTCAGAAGTCGGTCCTGATTTTGTGGAAGTCACCCCTTCAAATAGTTGGAGGGTTCACTTGAAA
TTTATGAACCCTTCACT-ATTTTTTTAAGAGCCGACACAATGGCGGATCCACGGCTCGC---CTTCTCGACTTTCAATCG
GCTTCGTACTGGGAACCGGAGGTGCTC--CTGCAAATAACATGCCCCGCAGCCAACCCGGAGATCCCCCAACCATAACAC
TACCCGGCAGCCAGCACAACACGGTCGAGAACAAGAGGC-ATCCAAGCCGAGGTCGTTGCAGCCATCGCCGCATCGATCG
GCGTCCCGTCCTCAATCGGAGGGCCCGCGTCAACCGGGCGAATGGCGACGCTCCGATCCGCCCTCCGGCACCTGGCACCG
GCCGCTCACTTCCTCAGCAAGGGCGGCGGACGCGGCAGCTCTGGGCCTAGCTTCACCGCCTTCAGGGTAGGCACCCACGT
TCAATCAATTTCCTAGGTTCAGGCTTCAGGGTAATTTTCAGTTACTGGGTTAAATACTCACAGTTCTGCGCCC-----AT
CCCTTGTGATTCGCAGCGGAAGCATTCCACCGGCGGCGGTGTATTCTACAGTACGATACTGTGGGACGAACCCTTCAATT
TGTACGTGCCCTGTCAT--TCTTTTCCATCAAATGTGTAGCTACCTAGATTCGTCAGGTAACGGGGATATGAGTCCTGT-
TTTTGACGGTGGTTTGTCTGCAGGAAAACGCCGGTGACCTGGTTCGCAATCATCGCCACCGCCATAGGAGCTACTTACAG
GATAAAGGTGCAGATGATTGATCATGAAAAGCAGAAGGCAGGTGGACATGCTGAGGGGAAGAAAAAGA-TAACATCTGAA
GCATCTGTGCCGTCTTCCTTTTAACTGAGAAGCATCAGTGTCTTGGATAAACAAGCTAAATTTGATGTGCATGAAGTCCT
TGCAGC-ATGAAGTTCAGTTTTATGCCACCCCGTGCTAGGTTGGAACCTGCATGA-------------------------
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-----------------------------------CA-------TGTCCTGTGTGCGTCTTTTGTACAATGAAAAGGCAT
TTACTTGCA---CATAA---ATTACAAGTAATGGACCTGTTATGAGACCCGATCCACCTGTGATTTCGTATCTGGGGATT
CCAAT------GACAAGAGGAAGAATTGAAGAACTAGAACTAGAACTTGGGGCGAGTTAGGGTAGGAGAAGCATAGGAGA
GAAACACAGTACTCCCTCGGATCCATATTACTTGTCGCTCGAACGGATTTATCTAGAGGGAGTAGCTTTGTTACCCAAGC
TGAAGTTACCC---------------------------------------------------------------------
--------------AAGCAGTTTCGTCAGGCTTGATGCCCGGAGAGGCGGAGACTCCGTAAACACCATCATGCACCGTCT
ATCTTTGGAGAATTGGAGATCCCATGTGTTGCTAGTACTACAGTACTAGACTAGAAACACTAGAACAAATCCCATATTTT
CTGCGAGTTTGCTTGTATTCGTATGAACATTGTTCATCAACAAATAAGGCTGCTAGTGATCCTCGGAAGAAAAAGGAACG
GTAACACAGGTGATCACA--TTTTTTCCCCTTCTGAGCGGCACAAGCGAGGAGTCATTGGTGAGATGTGAGAGAGCAAGA
TGGCGAATTATACGGGTCTACATGTTGTCTACGTAGTACGTACGTACATCCGAGTAGCCGTATCTTTTCCCCTCTTCACT
TCCACTTGCGCCCGTACATCTTCTTGTGCTTGCCAAACTTGCCGTGCTTGAACTTGCCATGCTTGAACTTGCCGTGGTGG
TGCCCGTGGCCGTACATTCCGTGGGCGCCGCCGTGTGACACCTTGTGAGCTCCATATGCTGCGGCTGCCGCTGCCGCGCC
GCCGGCAATCATACCGCCTGCTACGCCATGGCTGCCTCCCCCGTACATAGGAGCTTGACCTGAACAAAATGGCTTGTAAG
TTGACTCGACCGAGTCCATAA----------CATG------CCTCCATGTAAACTGGGAAGTGCCATTTTTATTTCTTTT
ATTAGATCTGATTGCTTTTTACTTGG------CATTTTTGGACATGAACATGCATACTTGATGGTTGCCGT
>chr5D_773
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-------------------------------------------------CACGGCTCGC---CTTCTCGACTTTCAATCC
GCTTCGTACTGGGAATCGGAGGTGCTC--CTGTAAATAACATGCCCCGCAGCCAACCCGGAGATCCCCCAACCATAACCC
TACCCGGCAGCCAGCGCAACACGGTCGAGAACAAGAGGCGATCCAAGCCGAGGTCGTTGCAGCCATCGCCGCATCCATCG
GCCTCCCGTCCTCAATAGGAGGGCCCGCGTCAACCGGGGGGATGGTGACGCTCCGATCCGCCCTCCGGCACCTGGCACCA
GCCGCTCGCTTCCTCAGCAAGGGCGGC-GACGCGGCAGCTCTGGACCTAGCTTCACCGCCGTCAGGGTAGGCACCCACGT
TTAATTAATTTTCTAGGTTCA-------------------------GGGTTAAATACTCACAATTCTGG--CC-----AT
CCCTTGTGATTTGCAGCGGAAGCATTCCACCGGCGGCGGTGTATTCTACAGTACGATATTGTGGGACGAACCCTTCAATT
TGTGCGTGCCTTATCAT--TCTTTTCCATCAAATGTGTGTCTAACTAGATTCGTCAGGTAAAGGAGATTTGAGTTCTGTC
TTTTGACGGTGGTTTCTCTGCAGGAGAACGCCGGTGACCTGGTTCGCAATCATCGCCACCGCCATTGGAACTACTTACAG
GATAAAAGTGCAGACGACTGATCATGAAAAGCAGAAGGCATGTGGACACGAGGAGGGGAAGAAAAAGGATAGCCTTTGAA
GCATCTGTGCATGTCTTCCTTTTACTGAGAAGCATCCGCATCTTGGATAAACAGGCTAAGGTTGATGTGCTTGAAGTCCT
TGTAGGCATAAAGTTCAGTTTTATGCCACCCCGTGCTAGGTTGGAACCTCTTTTTTTTTAGGGTACTACGGCGGGCAAAA
GCCAGCCTGAACGCATTTATTAATTTTAAGGTTTAACAGAGTATATGTACAGAGGGTGGGGGATTTGAGAAGGTAGAAAC
ATCAAAAGAAAACAACTATGCTAATGCTACATCTAGCCGGGACAACATGATACCCCAGTCAATCAGAACTTGTTTGCGAT
CTTCATTTCCACATCTATGGGCCCAAAGAAAGAGGTCTTGCGCTGCCCGCCGAAGAACGAAACCCGAGGACTCAACTTCT
TGCTTGAAAACATTAGCATTCCTTCTTTTCCACACACTCCAGAGGATGGACATAATAACCGTATTACGAATTATGCAAGT
AGGTGAACGACCCTGCAGGCCTTGGTTGGAACCTGCATGTCCTGTGTGGTGTGTGCGTATTTTGTACAATAAAAACCAGT
TTAGTTATA---CATAAATTATTACAAGTAATTAGCCTGTTAT--GACCCGATGCACCTGTAATTTCGTATCTGGGGATT
CCTAT------GACAAGAGGAAGAATTGAAGAACTAGAACTAGAACTTGGCGGGACTTGGGGTAGGAGGAGCATAGGAGA
GAAACACGGTACTCCCTCCTATCCATATTACTCGTCGCTCAAACGGATTTGTCTATAGGAAGTATCTTTGTTACCCAAGC
TGAAGTTGCCCTCTCGGCAGGCGCGCCATCACCCCTGTTTCGTTACTTGCCTGAATGAACATGTTCAGTTCCGTCAGACA
TCCTTTTTTTGCGAAAGCAGTTTCGTCAGGCTTGATGCCGGGAGATGCCGAGACTCCGTAAGCACCATCATGCACCGTCA
ATCTTTGGAGAATTGGAGATCCTATGTGTTGCTAGTACTACAGTACTAGACTAGAAACAATAGAACAAATCCCATATTTT
TTATGAGTTTGCTTGTATTCGTATGAACATTGTTCATCAACAAATAAGGCTGCTAGTGATCCTCAGAAGAAAAAGGAACG
ATAACACAGGTGAATCAC--ATTTTTTCCCTTCTGAGCGGCACAAGCGAGGAGTCATTGGTGAGATGTGAGAGAGCAAGA
TGGCGAATTATACGGGTCTACATGTTGTCTACGTAA----TACGTACATCCGAGTAGCCGTATCTTCTCCCCTGTTCACT
TCCACTTGCGGCCGTACATCTTCTTGTGCTTGCCAAACTTGCCGTGCTTGAACTTGCCATGCTTGAACTTGCCCTGGTGG
TGACCGTGGCCGTACATCCCGTGGGCGCCGCCGTGCGACACCTTGTGAGCTCCATATGCTGCGGCTGCCGCTGCCGCGCC
GCCAGCAACCATACCGCCTGCTACGCCATGGCCGCCTCCCCCGTACATAGGAGCGTGGCCTGAACAAAATGGCTTGTAAG
TTGACTCGACCGAGTTCATAA----------CATGGTCATGCCTCCATATGAACTGTGAAGTGCCATTTTA---------
-TTATACCTGATTGCTTTACTA-------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----S---------S--S----S
---S---------S-----------S----S----------------------SS--------------S----------
-----------------S-------SS-----SSSSSSSS-SSSSSSSS-SSSS-SSSSSSS-----S------S-----
--------------------SSS-SSSSS----S---------S---------------------------S--------
-------------------------S----S----------------------SS----------S--------------
------S---------S------S-------------------------------------------------S------
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---------------------------------------SS------S-----------S-------------SSSSS--
---------------------------------------S--------S---------------------------S---
-----------------SS-------------------------------------------S--------SS--S---S
--S-----------------------------------------S-----------------------------------
-----------------------------------------------------------------SS-S-----------
SS--------S----S----------------------------------------------------------------
--------------------S-------SS--------S-----------------------------------------
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--------SSSS--------------------------------------------------------------------
-----SSSSSS------------------------------S-S------------------------------S-----
---------------------------------S--S-------------------------------------------
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------------------SS-SS---------------------------------------------------------
-------------------------------------------SS---SSSS-SSS-----------S------------
------S-----------SS-----S------------------S----------------------S------------
--------------------------------------S-----------------------------------------
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-S-------------------------------------------------------S-----S-------SS-------
------------S---------------------------------------------------------------S---
-------------SSSSS-SSSSSSSSSSSS-----------------------SS-----------S------------
--S-S----------S--S----S-SSSSSSS--S--------------------------S----S----
>forward_503
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---TGGGATCGAGCAGAGAAGGA---------------------------------------------------------
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>reverse_2202
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-----------------------------------------TGGGAGTTGGGGTAGGAGAA-------------------
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