>input_sequence_79442
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-----------------------------------------------------------CACCA-------------AGC
AAACAAGAATATCTTCCTTCGTTCTAC---CAGCAGCAACAAGTAATCCTTGATG----CCAGACTGCCTGATCAAAGCA
TTCGGCAGTAGAGGATCCATGGCTATGGAGAGGTTCTTCACGGCGCTCGTCTTCTGCGAGGCCCCGCTGGACGGCTACGG
CACATCGGTGCTTACCGCCGGCACGGTCAAAAGGCTGGTCTCAGGTGGCGGCCACGCGACGAAGCCAGCAGTGGCTAACA
AGCCGGACTCTGAGAAGGCGCAGGGTTACTTCACTGGCAAGCCGACGGCGCAGCGGCGCCCCGGGTTCGAGCTCGCGTTC
GACGGGCTCAATTGCTTTGACACCATCGTCATGCACTAAGCAAGTCAGTGTCATGCCGGCTTTCTTGATTTTGATCAGTA
ATTCTGTATAGA--ATTGGATCGGTTAG-----------ATGCTTGACACGTACTTGGGGCTGTGATTTTTTTTGTT---
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>chr7D_1_TraesCS7D01G068500
AAAGAAAAACAAGAGGGGTGCGCCGGAGGAGGTGGGAGCGCCGGATTGCAAAACGGACAACGTGGAAAATGCTCGGATGC
ATGAGACGAACACGTATGCAAAATGAGATGCACATGATGACATGATATGAAATGCAAGACATGAAACAAAATGCAAAACG
AAAGACAAAACCCGACCACGAAGGGAATATCATACACATAGCCGAAAATGGCAAGAGTTGGAGTTACAAATATGGAAAGT
TACATCCGGGGTGTTACATGAGGCTTGCCCATTCGTTGACACTTAGATCGGTTGGTTTTCTCAGCTTGTTAGGTGGACGG
CTTTTTGAGGCCACCGGATTAGATGATGTCCGTTGAGGCTGTCAGGGCACATCTATATACTTGTAGGTGTAGCAACTTGG
TTCGCCAAGAAGGTGGCTTTGGGTTGATCTATTTATTTGTTTTGTCAGACTCATTTAATAAAGATGGTTGTATGCATCAT
TTTTTATGAAAAGTCTAGAGTAATTTTTTTTAAAGGCAGGCCGATGCATGTAGCTTCTGCTTGCGCAGGGTCAGAGAAAG
GGTCCGACCATGAGAAAAAAGACTACCGACAATGTGTTTTCAAAGATTGGACGCTAACGGATTCCGTGGCACCTAACCCC
CTTCTAGGTGGCAGTCCGAATCTTCTATCACTACTACGAAATTCAAAGCCGAGACGATATGATTTGACCGAAAAGTCAGT
ATACAGCAGCAAAGGAATATCTAATCCAACGGTGATGTGCTTCTCAACCTCACGTCACGCTACGGGTAAGAATAGGTCAA
ACCCGGATGTCCTTGTCCGCACGCGCAGGCATGGTGGAGACAGAGTAGACTCCATCTAATCCAACCCGACACGGCACGGT
CGCAATCCTCTAG-A-C----TCCGGCTCGTGCGTACTCTGCTTCCGCGTGCCCTCCGAATTCCAACCGGAGACCTGCAC
GCACAGG------------GCGACCCTATAAAATCCCAACCCCGA-CGTCCAGCTGGATCACCA-------------AGC
AAACAAGAATATCTTCCTTCGTTCTAC---CAGCAGCAACAAGTAATCCTTGATG----CCAGACTGCCTGATCAAAGCA
TTCGGCAGTAGAGGATCCATGGCTATGGAGAGGTTCTTCACGGCGCTCGTCTTCTGCGAGGCCCCGCTGGACGGCTACGG
CACATCGGTGCTTACCGCCGGCACGGTCAAAAGGCTGGTCTCAGGTGGCGGCCACGCGACGAAGCCAGCAGTGGCTAACA
AGCCGGACTCTGAGAAGGCGCAGGGTTACTTCACTGGCAAGCCGACGGCGCAGCGGCGCCCCGGGTTCGAGCTCGCGTTC
GACGGGCTCAATTGCTTTGACACCATCGTCATGCACTAAGCAAGTCAGTGTCATGCCGGCTTTCTTGATTTTGATCAGTA
ATTCTGTATAGA--ATTGGATCGGTTAG-----------ATGCTTGACACGTACTTGGGGCTGTGATTTTTTTTGTTC--
------ATTCGATTGTACTGTTCGACTGGTGCATAAGCTTCAATACAAACGAAAAGAGTTTAAAGGGGATATCTACAAGT
ATCAGCTTATGGCTTCGATTCCAAGTTCATGTAGATCATTCAGCCAGTCTACTGTTTGACTATCTCTGTTGGACTTATCT
CTC-------------------------ACGACGTTGAATATTTTTCCGG---TCTGCTTTCCAGTGCATGTTAATTAG-
--------------------------------------------------TCGCTGCCTGAAAAGTAG------TATAAG
AGGAAGAGAATATCAGTGAGGAGAGAACAAAACTACAGTCTCTGCATGTGTGCAGAATTGTACTAGGTGTTCGATTTTAC
ACGCCAAGCTTGCCATTTGGCAAAAGAATAGTCTGACCTTGCATAGCAATGTTGGACAGAAACAAAAGTAGTATCTAAAA
GCAGAGCAGCCGGCAAGTGATGTACTGCAGTCTCGATCTTGCAGATATGCATGAGTATGTGCAGGTTATTGGGGCATCTC
CATAAAAACAGATACGCAAAACGTTCATGAAAGATGTCTGAATATGTCCGTGGACAACGGATAGGGGACGGCCATCCAAC
CCTGTGAACCAAATTTTCCTTATTTTTTTATATATATTCGGAGCACTTAAATATCTATGGTAAACTAGGTGACTACCCCA
CAGGTTGCGACAGGGTTTTTAAAGATTAATTCCTGATGAGTTGTGTATGAAGAAAATGATCTAAAACAAAAACTACTATT
TTTAATGTGAAACTATGTCATACTTGCATTGTGTGTGAATAAAGAGTATGCATTCTTGTACTATGTGTGAACACGAAGTA
TGCATGTGGTTTGCATGGGGCTGTAAAATAGTGTTAGTGGATCCTGACATGACACACTTGATGAGGTGGCAGGCTACATG
TTGAGATCATTAAAATTAGTGGGGATCAACTATTTAAAAATAGTATATTTCATTGATAGTTGGTCTTTTCAAAAACGCAA
AAAAGTTCCCACCCGGCCACTCAACAGAGGCAAACTGCTATATAAAGCCA
>chr7A_604
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-------------------------------------------AGATTGGACACTAACGGATTCCGTGACACCTA-CCCC
CTTCGAGGTTGAAGTCCGAATCTTGTATCACCACA---AAATTCAAAGCCGAGACAATATGATTTGACCGAAAAGTCAGT
ATACATCAGCAAAGGAATATCTAATCCAACGGTGATGTGCTTCTCAACCTCACGTCACGCTACGGATCGGATGAGGTCAA
ACCCGGGTGTCCTGGTCCGCACGCGCAGGCA---TGGAGACAGAGTAGACTCCATCTAATCCAACCCCACACGGCACGGT
CGCAATCCTCTAG-A-C----TCCGGCTCGTGCGTACTCTGCTTCCGCGTGCCCTCCGAATTCCAACCGGAGACCGGCAC
GCACGGG------------GTGACCCTATAAAATCCCCACCCCCA-CGTCTAGCTCGATCACTA-------------AGC
AAACAAGAATCTCCTCCTTCGCTCGAGGAGCAGCAGCAGCAAGGAATCCTTCTTT----CCAGACTGCCTGATTCAAGCA
TCCGTCAGTAGAGGATCCATGGCTATGGAGAGGTTCTTCACGGCGCTCGTCTTCTGCGAGGCACCGCTGGACGGCTACGG
CACGTCGGTGCTCACCGCCGGCACGGTCAAAAGGCTGGTCTCGGGTGGTGGTGACGCGACGAAGCCGTTGGTGGCTATCA
AGCCGGACGCTGAGAAGGGGCAGGGTTTCTTCACTGGCAAGCAGATGGCGCAGCGGCGTGCTGGGTTCGAGCTCGCGTTC
GACGGCCTCAATTGCTTTGACACCGTCGTCATGCACTGAGCATGTCATTGTCATGTC-GCTTTCTTGATTTTAATCTGTA
----TAGAACTTGGAT-----CAGTTAG----------AATGTTTGAGACGTTGGTGGGGTTGTGATGTTTC--GTTC--
------ATTCTAGTCTAGTATTTGACCGGTGCACAAGCTTGTTTACAAACGAAAGGAATTTAAAGGGGACATCTCCTAGT
ATCATTTTATGTCTTCGATTCCATG-TCATGTAGATCATTCAGTCAGACTACTATTTGACTATCTGTGGCACGCGCTTGT
TGTACAATTAAGAGGTGTGGCTGGTAATACGACGTCGAAAATTTCCCTCCGGCTCTGCTTTCCTGTGCATGTACCATCTC
TTCCTGAAAAGTAGTAAGAATATAAGAGGAAGATAATGACACATGTACCATCTCTTCCTGAAAAGTAGTAAGAATATAAG
AGGAAGATAATGACACTGAGGAGAGAACAAAACT--AGTCTCTGCGTGTGTGTAGAATTGAAGTAGGAGTTGGACCTTAC
AGGCCAAGCTTGCCATTTGGCAAAAGAATAGCGCAACTTTGCTTAGCAATGCTTGACAGAAACA----------------
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>chr7A_604
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-------------------------------------------AGATTGGACACTAACGGATTCCGTGACACCTA-CCCC
CTTCGAGGTTGAAGTCCGAATCTTGTATCACCACA---AAATTCAAAGCCGAGACAATATGATTTGACCGAAAAGTCAGT
ATACATCAGCAAAGGAATATCTAATCCAACGGTGATGTGCTTCTCAACCTCACGTCACGCTACGGATCGGATGAGGTCAA
ACCCGGGTGTCCTGGTCCGCACGCGCAGGCA---TGGAGACAGAGTAGACTCCATCTAATCCAACCCCACACGGCACGGT
CGCAATCCTCTAG-A-C----TCCGGCTCGTGCGTACTCTGCTTCCGCGTGCCCTCCGAATTCCAACCGGAGACCGGCAC
GCACGGG------------GTGACCCTATAAAATCCCCACCCCCA-CGTCTAGCTCGATCACTA-------------AGC
AAACAAGAATCTCCTCCTTCGCTCGAGGAGCAGCAGCAGCAAGGAATCCTTCTTT----CCAGACTGCCTGATTCAAGCA
TCCGTCAGTAGAGGATCCATGGCTATGGAGAGGTTCTTCACGGCGCTCGTCTTCTGCGAGGCACCGCTGGACGGCTACGG
CACGTCGGTGCTCACCGCCGGCACGGTCAAAAGGCTGGTCTCGGGTGGTGGTGACGCGACGAAGCCGTTGGTGGCTATCA
AGCCGGACGCTGAGAAGGGGCAGGGTTTCTTCACTGGCAAGCAGATGGCGCAGCGGCGTGCTGGGTTCGAGCTCGCGTTC
GACGGCCTCAATTGCTTTGACACCGTCGTCATGCACTGAGCATGTCATTGTCATGTC-GCTTTCTTGATTTTAATCTGTA
----TAGAACTTGGAT-----CAGTTAG----------AATGTTTGAGACGTTGGTGGGGTTGTGATGTTTC--GTTC--
------ATTCTAGTCTAGTATTTGACCGGTGCACAAGCTTGTTTACAAACGAAAGGAATTTAAAGGGGACATCTCCTAGT
ATCATTTTATGTCTTCGATTCCATG-TCATGTAGATCATTCAGTCAGACTACTATTTGACTATCTGTGGCACGCGCTTGT
TGTACAATTAAGAGGTGTGGCTGGTAATACGACGTCGAAAATTTCCCTCCGGCTCTGCTTTCCTGTGCATGTACCATCTC
TTCCTGAAAAGTAGTAAGAATATAAGAGGAAGATAATGACACATGTACCATCTCTTCCTGAAAAGTAGTAAGAATATAAG
AGGAAGATAATGACACTGAGGAGAGAACAAAACT--AGTCTCTGCGTGTGTGTAGAATTGAAGTAGGAGTTGGACCTTAC
AGGCCAAGCTTGCCATTTGGCAAAAGAATAGCGCAACTTTGCTTAGCAATGCTTGACAGAAACA----------------
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>chr7D_839
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--------------------------------------GACCGAGTAGACTCCATCGTCTGA---CCCACACGGCACGGT
CGCAATCCTCTGCGGACTTGTTCCTGCACGTGCGTACTCTGCTTCGGCGTGCCCTCCAAGTTCCAACCGGAAACCGGCCG
GCACGCACAGGGCCCGGCCGCGTCCATATATAGTCCCCACCCCCGG-----CGCTCCATCGCCA-------------CAC
-AACAAGAATCTCTCCGTTCGTTCCACAA--AGCAGCAGCAAGGAATCGTTGGTG----CCGGACTGCCCGATCGAATCA
TCCGTC---AGAGGATCCATGGCCATGGAGAGGTTCTTCACGGCGCTCGTCTTCTGCGAGGCGCCGCTGGACGGCTACGG
CACATCGGTGCTCACCGCCGGCGCGATGGACAGGCCGGTCTCTGCCGGCGGCAGCGCGACGAAGCCGGCGGTGGCTAACA
AGACGGACTCTCAGAAGGAGCAGGGACTCTTCAACGGCAAGCCGACGGCGCAGCGGCGCCCTGCGTTCGAGCTCGCGTTC
GACGGTGTCAACTGCTTCGACACCGTCGTCATGCACTGAGCATGTC----------------------------------
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>chrUn_859
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----------------------------------------------------------ATCTAACTCCACACGGCACGGT
CGCAATCCTCTAG-AAC----TCCGGCTCGTGCTTACTCACCTTCCGAGTTTG-----------AACCGAAGACCAT---
-------------------GCGACCCTGTAAAATCCCCAACCCCAACTTCCCACTCGATCACCA-------------AAC
AAACAAGAATCCCTTCCTTCGTTTGAC---GAGCAGCAGCAATGAATCGTTCGTA----CCAGACTGCTTGATCAAAGCA
TCCGTCAG---A-GATCCATGGCGATGGAGAGGTTCTTCACGACGCTCGTCTTCTGTGAGGCGCCGCTAGACGGCTATGG
CACATCGGTGCTCACCGCCGGCACGGTCAAAAGGCTGGTCTCTCGTGGCGGCGATGCGACCGAGCCGGCGGTGGCTAACA
AGCCAGACGCTGAGAAGGAGCAGGGTTTCTTCTCTGGCAAGCCGACTTCCGAAAGGCGCGCTGCTTTCGAGCTTGCCTTC
GACGGCGTCAATTGCTTCGACACCATGGTTATGCACTAAGCATGTTAGTTAT-------CTTGATTGAATTTGAGCTGTA
----TGTAAAAA--CTCGGATCAGTTAGAAATTACTAGAATGCTTGACGCGGACGTGGACTTGTGATTTTTT--TTTGTT
CATTCGATTGTATTGTACTGTTCGACTGGTCCATAAGCATCAGTACAAATGACAGGATCTTAAAGTGGATATCTAGTAGT
ATCAGTTTGTAGCTTGGGTTCAGAGTTTATGTAGATCA------------------------------------------
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>chr7D_865
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----------------------------------------------------------------CCCCACACGGCACTGT
CGCAATCCGATTCCAGC----TTCTGCACGTGCGTTCTCAGCTTCGGCGTGCCCTCCGAGTTCGACCTGGAGACCGGCAC
GCAGAGG------------GCGACCCTATAAAATCCCCACCCTG-ACATCCAGTACGATCACAAGTTCACAACTCAAAGT
AAACAACAGAAA---------TTAGAC---GAGAGGCAGCAAGGAATCGTTCGTTGGTGCCAGACTGCCTGATCGAAGCT
AAGTTATCAGAA-GATCCATGGCCATGGAGAGGTTCTTCACGGCGCTCGTCTTCCCCGAGGCGCTGCTGGACGGCTACGG
CACGTCGGTGCTCAGCGCCGGCGCGGTCAACAGGCTGGTCTCAGGCGGCGGCAGCGCGACGAAGCCGGCGGTGACTAGCA
AGGCGGACGCCGAGAAGTTGCAGGGAAATT------------CGACAGTGCAAAGGCGCGCTGTGTTCGAGCTCGCGTTC
GACGGGCTCAATTGCTTCGACACCATTGTCATGCACTGAACAC--------CACGTC-GGTTTGTTGATTTTGATTTGTA
----TAGAACTTGGATTGGATCAGTTGA----------AATGCTTCACACGTACGTGAGATTGTGATGTTTT--GTTC--
------ATTC----------------------------------------------------------------------
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>chr4A_962
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-------------------GCGACCCTGTAAAATCCCCAACCCCAACTTCCCACTCGATCACCA-------------AAC
AAACAAGAATCCCTTCCTTCGTTTGAC---GAGCAGCAGCAATGAATCGTTCGTA----CCAGACTGCTTGATCAAAGCA
TCCGTCAG---A-GATCCATGGCGATGGAGAGGTTCTTCACGACGCTCGTCTTCTGTGAGGCGCCGCTAGACGGCTATGG
CACATCGGTGCTCACCGCCGGCACGGTCAAAAGGCTGGTCTCTCGTGGCGGCGATGCGACCGAGCCGGCGGTGGCTAACA
AGCCAGACGCTGAGAAGGAGCAGGGTTTCTTCTCTGGCAAGCCGACTTCCGAAAGGCGCGCTGCTTTCGAGCTTGCCTTC
GACGGCGTCAATTGCTTCGACACCATGGTTATGCACTAAGCATGTTAGTTAT-------CTTGATTGAATTTGAGCTGTA
----TGTAAAAA--CTCGGATCAGTTAGAAATTACTAGAATGCTTGACGCGGACGTGGACTTGTGATTTTTT--TTTGTT
CATTCGATTGTATTGTACTGTTCGACTGGTCCATAAGCATCAGTACAAATGACAGGATCTTAAAGTGGATATCTAGTAGT
ATCAGTTTGTAGCTTGGGTTCAGAGTTTATGTAGATCA------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---------------S------S----
----S----S-S------------S------S--SSSS-----------------S------------------------
-----S-----------------------------------------------------------S-SS--SS-------
------S------S-----------------SSS---------------------------------S------------
---------------------------------------------------------------------------S----
-------------------------------------S-----------------S------------------------
------------------------S-------------S----S--------S---------------------------
-S--S---------------------------------------------------------S-----------------
------------S---------------------------------------S-------------S--S----------
------------------S------------------------------------------S------------------
------------------------------------------S------------S-S------------------S---
SSSS----S-S-----------S-------------------------------S-----S-----------SS------
----------S-------------------------------S-----------S--S------------------S---
-----S-------------------------------------S---S-----S-----------S--SSSSS-SSS-S-
SSS--------------------------------S---S----SS-SSS-------------S--------SSSS-SS-
----------------------------------------------------S--S------------------------
-------S---SS--S------------------SS---------S------S-------S-S----S---S--SS----
-S-----------------------------SSSS--S----S--------S-S----------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_266
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------CGGGGTGTTACATGAGGCTT------------------------------------------------------
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>reverse_1915
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--------------------------------------------------------------------------TTTTAC
ACGCCAAGCTTGCC------------------------------------------------------------------
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