>input_sequence_79422
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-----------------------------GTTTAAGGAGCTGTGAAATCAGCCGGTTCAATCTAACACTGTCCCAATATT
TTATTAGTTTTCTAGTTTTCT---TGTTCACAGGGTGCATCTAAAGTCGAATGTAGAAAGTCCATGGCCCGCACCGCACA
CAAGCCTCTTCGTATCTTCGAGAGAGAAAAAAAATCATCCTTCGAGAGATTTCGCGGGGGCGCGGGTTCGTGAGGAGCTA
GGGTTTGGGAGGGAGCAGCGGAGAAGATGATCGAGGTGGTGCTGAACGACAGGC--TGGGGAAGAAGGTGCGGGTGAAGT
GCAACGAGGACGACACCATCGGCGACCTGAAGAAGCTCGTCGCGGCGCAGACGGGGACCAGGCCCGAGAAGATCCGCATC
CAGAAGTGGTACACCATCTACAAGGACCACATCACCCTCGGCGACTACGAGATCCACGACGGCATGGGCCTCGAGCTCTA
CTACAACTAGAGTCTAGAA-------------------------------------------------------------
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>chr5B_1_TraesCS5B01G132000
ACAGTACGGTGTTTCCTATGACTCAAGAAAGAGAAAATGAAACTACGAAAACAAAAGTCTTCACGCTTCATGTTCCACAA
ATGAATACCAAGTCTTCAAGGTCACACCAATTTCTTCACTTTCAAAGTCTTCAGAAAGTCTTCGGAATATCAAAGTCTTC
AGATGAAGAACTCCATTTTTAGGGGTCGACTTTCTCTGTAAATATCAAACTCCTCATAGACTTATAGACCTGTGTACACT
TACAAACGCATTAGTCCCTTAACCTATAAGTCTTCAATACACCAAAATCACTAAGGGGCACTAGATGCACTTACACACCA
CCACCTCGGCAGCGGAGGCGTTGCCGGAGGGCGTCGCCGAAGGGCTTGGAGATGAGCGCGGAGGGGGCGGTGATGTTGGC
CAGGAAGGCCATGTCGGGGGGTCTCCTCCTCCGGGGTGTCCATGGTCAGCAGCGGCTCGTCCATGTTGTCCGCCACCAGC
ACAGCCGTCGCGCCTGCCTGCTGCGCGTTCCACGTCTTGAGCGCGAAGTAGCAGCCGCCGT---TCGAGCGCAGCCTCGC
CAAGCCCCCAAGCTCTCCGTTTGGCGGGGCGACGCGGGAGGGCGGGCGCG-------------------CGACCGCAGAG
GCT-----------GGCGGGGCGGGAGTCCGGGCGACGCTGCGGGC----------------------------------
--CGGAGCTGGCACGGGGAGAGAGAAGCGGATGGGAAGAGAGAAGATGGGGGCTCTGCGAGGAAAAAGCGAGGGGGGAGA
GAATGTGGGGGAAGATGTGGCTGCAGGTGGGCCACACGAGGCAAAAAGTGACGTCGGCGTTCCTAGCTGCCCCCCCGGGG
CTGGGTTTGGGGTGGGATTACCGCAAATCCGAAGAAAAATAAACCTTTAGAGGCGTGAGTGGAACGGTTTTTTATCGTCG
GGACTAAAAAAGTGGTCCTCAGGTATTCTTTGGGGACGGCTGGAGATGCTGAAAGGGAGGTTGCCAGCGGTGAGTGGGTC
CAGTGGACATGTGGCGAGCAAAGCGAGCGGTTTAAGGAGCTGTGAAATCAGCCGGTTCAATCTAACACTGTCCCAATATT
TTATTAGTTTTCTAGTTTTCT---TGTTCACAGGGTGCATCTAAAGTCGAATGTAGAAAGTCCATGGCCCGCACCGCACA
CAAGCCTCTTCGTATCTTCGAGAGAGAAAAAAAATCATCCTTCGAGAGATTTCGCGGGGGCGCGGGTTCGTGAGGAGCTA
GGGTTTGGGAGGGAGCAGCGGAGAAGATGATCGAGGTGGTGCTGAACGACAGGC--TGGGGAAGAAGGTGCGGGTGAAGT
GCAACGAGGACGACACCATCGGCGACCTGAAGAAGCTCGTCGCGGCGCAGACGGGGACCAGGCCCGAGAAGATCCGCATC
CAGAAGTGGTACACCATCTACAAGGACCACATCACCCTCGGCGACTACGAGATCCACGACGGCATGGGCCTCGAGCTCTA
CTACAACTAGAGTCTAGAAGTAAATTTCTCCCCTCGTTTCCTCCCATGTAATTTTGGTGTTGCTCCGTCGAAATTGCCTC
TCGACGAGTTATGGTTCTTAGCGGTGTTCGTCGATTAGGATGGTTTATTAGTACTCCTCGATTAGGAGGGTTTAATTTTG
GGGGGACTCCGCTTGGGATGGTTTTAGTTTTGAGAGACTCGTCGACTGTGAAGGCTTGAAGTTGCCTCTGGATATTTGAG
TTTTATCTGATATTCGTTTGTACTGATAAATTGGGCATCTCTGAGAACTATGCTAAGTAAATGAGAGGGTGTCGCTTACC
ATGCATCTAAATTGAGGTTCTGTGCACATCCGAGTTCTTGACCTAGTCTATGTGA-GC----------------------
----------GCTTTGGTGCTTTGTGCGGTCAGAATACAGAGGAGATGAGAGGATAGCGTGAGGAGGAGGGAGCTGAGCA
TGTGAGCGTTATTTTAGCGGAGGGAGCTGAGCATGCGATCATTATTTTTGTTGTGTAGCATCCCAGCGTTGGAGAGAACG
GGTGCCAGGCCAGGCGCTACGCCAACGTTAAAGCAACTGAAGCACCTCCGACTCGCACCTCCGCATTGCGACACCACGTT
TATTTGCGACGCAACGCTAGTCTTTTTCCTTAAGCACCTGGCATAAGCACCCACCATTGTACAAGGCCTGAGTGGAAATA
ACATGGTTGTAGTTGCTCCCGT--AAAAAAATAAGGATGTAGTATTGTAGTTGCAAGATAGTACAAGATTTGTGTATTTG
TAAGAGTCATGCCATGCTCATTCATTTGTAAATAGCATGCCCTGAACTTCTCCGTTTTATGCTTGTTATGTCAGCCAGCC
AGGTTTTGTTGTTTAGCTTGATAGTTTTTTGCAAATTCTCTAAAATGTTGCACACATTAGTATACACGAATACAA-----
-------------------------------T------------------------------------------------
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----------------------------------TGATTTACTAAATCATAGTAGTTGTCTGCCATTCAGTCTGTTTATT
TTCTGGGAATAACCTTCTTCGAGTT-AATTTCAAGCTCAATGTCACACATATT
>chr5B_333
CGGAGGCCGCGGCA------------------------------------------------------------------
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------------------------CGGAGGGCGTCGCCGAAGGGCTTGGAGACGAGCACGGAGGGGGTGGTGATGTTGGC
CAGGAAGGCCATGTCA-GGGGTCTCCTTCTCCGGGGTGTCCATGGTCACCAGCGGCTCGTCCATGTTGTCCGCCACCAGC
ACAGCCGCCACGCCCGCCTGCTGCACGTTCCACGTCTTGAGCGCGAAGTAGCAGCTGCCGC---TCGAGCACAGCCTCGC
CAAGCCCACGAGCTCTCCGTTTGGTGGGGCGGCGCGGGATGCCGGGCGCGGCGGCCCGATGCGGGCGCGCGTCTGTAGAG
GGCTGGCGGGCTGGGGCGGTGCAGGAGGCTGGGCAATGCTGTGGGC----------------------------------
--CGAAGCTGGCGCGGGGAGA-----------------------------------------------------------
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--------------------------------------------------------------------------GAGAAA
CGGATGGGGAGAGAGAAGGTGGGGGCTCTGCAAGGA-----------GAAAGCA--GGGGGGAGAGAATGTGGAGGGAG-
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---------------------------------------------------------------ATGTGGCTCCAGGTGGG
CCACACGAGGC-------AAAAAAGTTGCGCTGGCGTCCCTAGCTGCCCCCCGGGGGCTGGG------------------
----------------------------------------------------------------------------TTTG
GGGTGGGATCACCGGGACTAAATTCAGTCAAATCCGGTGAAA--------------------------------------
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----------------------------------------A-CAAGCATTTGGGGGCGTGAGTG----------------
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---GAGCATTTTTTTACCGCCGGGGCTA----------------------------------------------------
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-----------------------------------------AAAAAGTGGTCCTGGGGGTGTTCTTGGGGGGACGACTGG
AGATGCT-------------------------------------------------------------------------
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>chr4D_466
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-----------------------------------------------------------------TTGTCCGCCACCAGC
ACAGCCGCCACACCCGCCTTCTGCGCGTTCCACGTCTTGAGCGCGAAGTAGCAGCAGCCGCCGCTCGAGCGCAGCCTTGC
TAAGCCCGCGAGCTCTCCATTTGTTG----GGCGAGGGAGGCCAGGCGCGACGGCCCGACGCGGGTGCGCGGCCGCAGAG
GGCTGGCGGG-----GCAGCGCGGGAGGCCGGGCGATGCTGCGCGGAGGCACCGGGGCGGGGTCGGGCGGCCGGGACGCG
CGCGGAGCTGGCACAGGGAGA-----------------------------------------------------------
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--------------------------------------------------------------------------GAGATG
CGGTTGGGGAGAGAGAAGATGGGAGCTCTACGAGGA-----------AAAAGCGATGGGGGAAGAGAATGTGGGGGGAG-
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---------------------------------------------------------------ATGTGGCTGCAGGTGGG
CCACACGAGGC-------AAAAAGGTGGCGCCAGCGTCCCGAGCTGCCCCCCGGGGGCTGGA------------------
----------------------------------------------------------------------------TTTG
GGGTGGGATCGCTGGGGCTAAATTTAGTCAAATCCGGCGAAA--------------------------------------
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----------------------------------------AACAAGCCTTTGAGA-CGTGAGTG----------------
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---GAACATTTTTTTACCGCCAGGGCTA----------------------------------------------------
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-----------------------------------------AAAAAGTGGTCCTGGGGGTGTTCTTA-GGGGCCTAGTGG
AGATGCT-------------------------------------------------------------------------
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>chr5D_1051
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-------------------------------------------------------------------------------T
TTATTATTTTTCTAGTTTTATTACTGTTCACAGGGTGCGTCTAAACTCGAATGTGGAAACTCCATGGCCCGCACCGCACA
CAAGCCTCTTCGTCTCTTCGAGA---AAAAAAAATCATCCTTCGAGAGATTTCGCGGGG-CGCAGGTTCGTGAGGAGCTA
GGGTTTGGGAGGGAGCAGCGGAGAAGATGATCGAGGTGGTGCTGAACGACAGGC--TGGGGAAGAAGGTGCGGGTGAAGT
GCAACGAGGACGACACCATCGGCGACCTGAAGAAGCTCGTCGCGGCGCAGACGGGAACCAGGCCCGAGAAGATCCGCATC
CAGAAGTGGTACACCATCTACAAGGACCACATCACCCTCGGCGACTACGAGATCCACGACGGCATGGGCCTCGAGCTCTA
CTACAACTAGA-------AGTAAATTTCTCCCCTCGTTTCCTCC-ATGTAATTTTGCTGCTGCTCCGTCGAAATTGCCTC
TCGACGTGTTACGGTTCTTAGCGGTGTTCGTCGATTAGGATGGTTTATTAGTACTCCTCGATTAGGAGGGTTTAATTTTG
GGGGGACTCCGCTTGGGATGGTTTTAGTTTTGAGAGACTCGTCGACTGTGAAGGCTTGAAGTTGCCTCTGGATATTTGAG
TTTTATCTGATATTCGTTTGTACTGATAAATTGGGCATCTCTGACAACTATGCTAAGCAAGTGAGAGGGTGTAGCTTACC
ATGTATCTAAATCGAGGTTCTGTGCACATCTGAGTTATTGAACTAGTCTCTGTGA-GCTGAATA-GAATCAACTTGAGAA
TTGAGATTGTGCTTTGGTGTTTTGTGCGGTCAGAATACGGAGGAGATGAGAGGATAGCGTGAGGAGGAGGGAGCTGAGCG
TGTGAGCGTTATTTTAGCGGAGGGAGCTGAACATGCGATCATTATTTTAGTTGTGTAACATCCCAGCGTTGGAGAGAACG
GGTGCCAGGCCAGGCGCTACGCCAACGTTAAAGCAACTGAAGCACCTCTGACTAGCACCTCCGCATTGCGAGACCACGTT
TATTTGCGACGCAACGCTAGTCTTTTTCCTTGAGCACCTGGCATAAGCACCCACCATTGTACAAGGCCTGAGTGGAAATA
ACATGGTTGTAGTTGCTCCCCGTAAAAAAAATAAGGATGTAGTATTGTAGTTGCTAGATAGTACAAGATTTGTGTATTTG
TAAGAGTCATGCCATGCTCACTCATTTGTAAATAGCATGCCCTGAAGTTCTCCGTTTTATGCTTGTTATGTCAGCCA-CC
AGGTTTCGTTGTTTAGCTTGATAGATTTTTGCAAATGCTCTAAAATGTTGCAGTGGATGGGCTCTTA-GCCCAGATGCAA
GAACGCGGTGGCATCTCTTCGCAGACTCAAGTTTGAATACTGTGTGCGGAACTGATCACTCTGATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCTAAATGTGGCAGTAACACATAGCCATAGGAGTTTATTGAACCTTTTC
TCACCAGTTTCACATCAGTATACACGAATACAACTGATTTACTAAATCATAGTAGTTGTCTGCCATTCAGTCTGTTTATT
TTCTGGGAATAACCTTCTTCGAGTTTAATTTCAAGCTCAATGTCACACATATT
>chr5A_1122
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-------------------------------------------------------------------------CCGCACA
CAAGCCTCTTCGTCTCTTCCAGA---AAAAAAACAACTCCTTCGAGAGATTTCGCGGGG-CGCAGGTTCGTGAGGAGCTA
GGGTTTGGGAGGGAGCAGCGGAGAAGATGATCGAGGTGGTGCTGAACGACAGGC--TGGGGAAGAAGGTGCGGGTGAAGT
GCAACGAGGACGACACCATCGGCGACCTGAAGAAGCTCGTCGCGGCGCAGACGGGGACCAGGCCCGAGAAGATCCGCATC
CAGAAGTGGTACACCATCTACAAGGACCACATCACCCTCGGCGACTACGAGATCCACGACGGCATGGGCCTCGAGCTCTA
CTACAACTAGA-------AGTAAATTTCTCCCCTCGTTTCCTCCCATGTAATTTTGGTGCTGCTCCGTTGAAATTGCCTC
TCGACGTGTTACGGTTCTTAGCGGTGTTCGTCGATTAGGATGGTTTATTGGTACTCCTCGATTAGGAGGGTTTAATTTTG
G-GGGACTCCGCTTGGGAGGGTCTTAGTTTTGAGAGACTCGTGGACTGTGAAGGCTTGAAGTTGCCTCTGGATATTTGAG
TTCTATCTGATATTCGTTTGTACTGATGAATCGGGCATCTCTGACAACTATGCTAAGTAAGTGAGAGGGTGTAGCTTACC
ATGTATCTAAATTGAGGTTCTGTGCACATCTGAGTTCTTGACCTAGTCTATATGA-GCTGAAATTGAATCAACTTGAGAA
TTGAGATTGTGCTTTGGTGCTTTGTGCGGTCAGAATACGGAGGGGTGGAGAGGATAGCGTGAGGAGGAGGGAGCTGAGCG
TGTGAGCGTTATTTTAGCGGAGGAAGCTGAGCATGCGAGCGTTATTTTAGTTGTGTAGCATCCCAGCGTTGGAGAGAACG
GGTGTCAGGCCAGGTGCTACGCCAATGTTAAAGCAACTGAAGCGCCTCTGACTAGCACCTCCGCATTGCGAGACCACGTT
TATTTGCGACGCAACGCTAGCCTTTTTCCTTGAGCACCTGGCATAAGCACCCACCATTGTACAAAGCCTGAGTGGAAATA
ACATGGTTGTAGTTGCTCCCCGTAA-AAAAATAAGGATGTAGTATTGTAGTTGCAAGATAGTACAAGATTTGTGTATTTG
TAAGAGTCATGCCGTGCTCATTCATTTGTAAATAGCATGCCCTGAACTTCTCCGTTTTATGCTTGTTATGTCAGCCAGCA
AGATTTTGTTGTTTAGCTTGATAGATTTTTGCAAATTCTCTAAAATGTTGCAGTGGATGGGCTCTTA-GCCCAGATGCAA
GAGCGCGGTGGCATCTCTTCGCAGACTCGAGT------------------------------------------------
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----------------------------------TGATTGACTAAATCATAGTAGTTGTTTGCCATTCAGTCTGTTTATT
TTCTGGGAATAACCTTCTTCGAGTTTAATTTGAAGCTCAATGTCACACATATT
>SNPs
SSSSSS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS----------------------------S----S---------S------------
---------------SS----------S--------------------S-------------------------------
-------S-S----S----------------------------------------S----S-------------------
-------S-S--------------S------S---------S-----------------------------S--------
-SS----------------S-------S--------S-------------------------------------------
---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
------S------------S------------------S------S--------S----S--------------------
-------------S---------SSS---------------------------------S---S----------------
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-----------SSSSSSS-----------------------------------------S--------------------
------S----S--------------------------------------------------------------------
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--------------------------------------------S---------------S-----------S-------
---S--------------------------S-------------------------------------------------
--------------------------------------S----------------------------------------S
------------------------------------------------S-------------------------------
------------------------------------------------S----S-----------------S--------
-------------------------------S------------------------------------------------
--------------------SS----------------------------------------------------------
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------------------------S----------------------------SSSS-S-SS-SSSS-SSSS-S------
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>forward_856
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------------------------------------CGAGGCAAAAAGTGACGTCG------------------------
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>reverse_2049
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------------------------------------------------TGTTGTGTAGCATCCCAGCG------------
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