>input_sequence_79421
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-------------ATGGGAACCTTACATTCCTGCATCAAAGAGGCAATAAGAATGCATTCTCCATCAGCAATGGTAATGC
GCCACGTGAAGAAGAACTTCACTGTACAAACAAGAGAAGGCTACAGCTATGAAATTCCAGAAGGGCATACCGTAGCTACC
TCCATAGTGGTTGGCAACCAGCTACCACATATTTATAAAGACCCTCATGTATATGACCCGTACCGTTTTGGTCCAGGGAG
AGAGGAGGACAAAGCTGGCGGCAAGTTTGCATTCACATCATTTGGTGGTGGGAGGCATGCTTGCTTCGGGGAGGAATATT
CTTACATGCAAATTAAAGTGATATGGAGTTTTTTGCTGAGGAACTTTGAGCTCAAAATGATTTCGCCTTTTCCAGAGGAA
GAAATTGATAAATTCATACCAGGGCCTAAAGGAAGAGTGATGGTCAGTTACAAGAGGCGACTTCTTGTCAGTACCTAG--
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>chr5A_1_TraesCS5A01G556000
TAAACTTGAGAAGGCATATAATGTTTGTAAGGATGCCTGCTCAAAACCTAGATGTGTAGTATATTTTGATAAACATGAGT
ATGTGCACTGAAAGCTCAGACACCAA-TTGGTCGACCAGTAGTTTGTACGCGAACAGATCACATAGGCATC--AACCAAG
GGATCGTA----TATGTTGGCAGTTTTGCTAGCGCTATGAGACTATCCAAACACTTTCTTT----GTACCAAATATAGAT
GAGAACATGCTGGTCAGAAAGCGTGACTGCACATTCTCCTTAGCAGGTAACCTCTAGATGGCCTCCCCCAAATTCATAAA
A------TTTGCTTTCATGAAAAATTTATCTAGTTTGGGGCATGAAAACTAAAACATAGAGGAACTAGTTGGGTATGTTC
CACTACATGCACAATAGGAAGAAGAGAAGACTTTTACAATATAGTTTCTTATATG-----AACTAACGAGTGGCTCATTT
CTCGTGATGTTCATCTCCATTTTGTAGGACTACTTCTCAAAATGGGAACAAGAGGGCATAATTGATCTAAAGCATGAGCT
GGCAGAGGTACTCATGCTAATCGCAAGCCGTTGCTTGCTTGGAAAAGAGGTCCGTGAGAAGATGTTCGAACAAGTCTCTG
TGCTCATCAATGATCTCTGCAAAAATGGCATGCACTTCATCAGCCTTTTTTTCCCATATATCCCAATCCCAGCCCACCGG
CAACGCGACAAAGCGTGTGCTAAGCTGGGACATATATTCCATGAGATAGTGAGATCACGTAAAATCTCAGGCCAAGTTGA
GGATGATGTGCTACAGAAACTTATAGACTCGAAATGCATGGAGGATGGCCGCTCTATGACCGAGAGTGAGATTACTGGGC
TACTCATTAGCTTGTTGTTTG-------------------------------CTGGGCGGGAGCTTGTCTAATAAGCCAT
GAAAAGTACTTAGCAGCCGCTGTAGAAGAGCAACAGAAAATCATTGGAAAACACGGACAAGATGTAGTAGTAGATTACAA
CATCTTGTTAGAGATGGGAACCTTACATTCCTGCATCAAAGAGGCAATAAGAATGCATTCTCCATCAGCAATGGTAATGC
GCCACGTGAAGAAGAACTTCACTGTACAAACAAGAGAAGGCTACAGCTATGAAATTCCAGAAGGGCATACCGTAGCTACC
TCCATAGTGGTTGGCAACCAGCTACCACATATTTATAAAGACCCTCATGTATATGACCCGTACCGTTTTGGTCCAGGGAG
AGAGGAGGACAAAGCTGGCGGCAAGTTTGCATTCACATCATTTGGTGGTGGGAGGCATGCTTGCTTCGGGGAGGAATATT
CTTACATGCAAATTAAAGTGATATGGAGTTTTTTGCTGAGGAACTTTGAGCTCAAAATGATTTCGCCTTTTCCAGAGGAA
GAAATTGATAAATTCATACCAGGGCCTAAAGGAAGAGTGATGGTCAGTTACAAGAGGCGACTTCTTGTCAGTACCTAGCT
A--AGTGATGAGATCGAAATTAAGGGTGGCTGTAATAAGTTTATACTG----TTATG----TATGTCTACTTATGTAAGC
AGTCCCTTCAGCTATTTTTCTG----------------------------------------------------------
---------------------------------------------------------------------TGGTTCGGCTC
TATGTTTTTCTGTGGTGGATGGCTGAGAGTCGGATGATGTGCTAAGAACTCATCTTGCAGAGTTGCAAGTGCATCGTAAC
TTCATATGTTTTGACATTTCCCATGTCACGATTGATGCTTTGAAACAGAATCATTATTATTCTTTTCTTTTTCTCAATAA
AGGGTGCTTTTATTAATTCAAAATATAGCAAGAATAAGAATTATTCAGAGAATAAGTATAAAGAGTATCTATATCTATAT
CTATATCTATACCTACTATTAAAGGGAATAGGTATTCTTAACTTGG----------------------------------
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--------------------------------------------------AGATAGGGTCGGAGTATAAGTCA----TCT
GATTCTGATCTGATTGCACAAGTATAAGACCAGGCTGAGATAACTTTGGAGTGGAAGGGACTCCGGATTTTGGTAGTGCA
GATAAGGTCAGGTTCAAATCTTCACTCTAGCTAGTATATATCCATGTAATAGCGTGTGTAAACCTTCCGCCATTTGGCTG
GACAGGAAATTCAAACCACCAAAACTAAGGAAGAAAGAAAACAAGGCAACGGAAATGAAAGAAAGAGCACAAACATTCCC
AAAACGTTT--CAGAAATTTCAGAGTGGATTTTCTCAGTCTTTTAGCGCAAACGTCAAGAGCACAGAATACACATTCTCC
TCAGTTCTGCAATCGACATGCCGAGACATGATTAAAAAGAAGATTTAAAGCCAGATTCACTAGTAGAAAAGGAGGCTTTG
GTCCAGGCCGGGTAAGCCCATTAGTCCCGGTTCAGTCCAGAACCGGGACCAATGGGTGCATTTATCCCGGTTCGTGCGGC
TAAGGCATTAGTCCCGGTTCACCTTGGCCCTTTAGTCCCGGTTCGTGCCACGAACCAGGACTAAAGGGTGCGATGCCCAT
TGGTCCCAGTTGGTGGCACCAACCG
>chr4B_1
TAAACTTGAAAAGGCATATAATGTTTGTAAGGATGCCTGCTCAAAACCTAAATGTGTAGTCTATTTTGATAAACACCAGT
ATGTGCACTGAAAGCTCAGACACCAA-TTGGTCGACCAGTAGTTTGTATGCGAACATATCACATAAGCCATCAAACCAAG
GCACCGTA----TATGTTGGCAGTTTTGCTAGCGCTATGAGACTATCCAAACCTTTTCATTGTAAGTACCAAATATAGAT
GAGAACATCCTAGTCCGAAAGCGTGACTGCATATTCTCCTTAGCAGGTAACCTCTAGATCGCCTCCCCAAAATTCATAAA
CTTAAACTTTGCTTTCATGAAAAATTTATCTAGTTTGGGGC-TGACAACTAAAACATAGAGGAACTAGTTGGGTATGTTC
CACTACATGCACAATAGGAAGAAGAGAAGACTTT-ACAATATAATTTCTTATATGAACGTAACTAACGAGTGGCTCATTT
CTCATGATGTTCATCTCTATTTTGTAGGACTACTTCTCAAAATGGGAGCAAGAGGGCATAATTGATCTAAAGCATGAGAT
GGCAGAGGTACTCATGCTCATCGCAAGCCGTTGCTTGCTTGGAAAAGAGGTCCGTGAGAAGATGTTCGAAGAAGTCTCTG
TGCTCATCAATGATCTCTGCAAAAATGGCATGCACTTCATCAGCCTTTTTTTCCCATATATCCCAATCCCAGCCCACCGG
CAACGCGACAAAGCGCGTGCTAGGCTGGGAAATATATTCCATGAGATAGTGAGATCACGTAAAATCTCAGGCCAGGTTGA
GGATGATGTGCTACAAAAACTTATTGACTCGAAATGCATGGAGGATGGGCGCTCTATGACCGAGAGTGAGATTACTGGGC
TACTCATTAGCTTGTTGTTTGCTGGGCAACATGCGAGCTCAAGCGCTGCCTCCTGGGCGGGAGCTTGTCTAATAAGCCAT
GAAAAGTACTTAGCAGCCGCTGTAGAAGAGCAACAGAAAATCATTGGAAAACACGGACAAGATGTAGTAGTAGATTACAA
CATCTTGTTAGAGATGGGAACCTTACATTCCTGCATCAAAGAGGCAATAAGAATGCATTCTCCATCAGCAATGGTAATGC
GCCATGTGAAGAAGAGCTTCACTGTACAAACTAGAGAAGGCTACAGCTATGAAATTCCACAAGGGCATACCGTAGCTACC
TCTATAGTGGTTGGCAACCAGCTGCCACATATCTATAAAGACCCTCATGTATATGACCCGTACCGTTTTGGTCCAGGGAG
AGAGGAGGACAAAGCTGGCGGCAAGTTTGCATTCACATCATTTGGTGGTGGGAGGCATGCTTGCTTCGGGGAGGAATACT
CTTACATGCAAATTAAAGTGATATGGAGTTTTTTGCTGAGGAACTTTGAGCTCAAAATGATTTCGCCTTTTCCAGAGGAA
GAAATTGATAAATTCATACCAGGGCCTAAAGGAAGAGTGATGGTCAGTTACAAGAGGCGACTTCTTGTCAGTACCTAACC
ACTACTGATGAGATCGTAATTAAGGGTGGTTGTAATAAGTTTGTACTGTTAATTATG----TATGTCTACTTATGTAAGC
AGTCCCTTACGAGTTGCAATG---------------------AAAGTACATGTAAGCCCATACCTTCAACTCGCAAAAAA
CAAAATCCATCCCTTGAGGTGTGACATGTCGCCCTTCCGCTATTATATTTGAGATCATATCACCAAAAATGGTTTGGCTC
TATGTTTTTCTGTGGTGGATGGCTGAGAGTTGGATGATGTGCTGAGAACTCATCTTGCAGAGTTGCAAGTGCATCGTAGC
TTCATATGTTTTGACATTTCCCATGTCACGATTGATGTTTG---------------------------------------
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>chrUn_27
--------------------------GTAAGGATGCCTGCTCAAAACCTAGATGTGTAGTCTATTTTCATAAACACCAGT
ATGTGCACTGAAAGCTCAGACACCAAATTGGTCGACCAGTAGTTTGTATGCGAACAGATCCCATAGGCATC--AACCAAG
GGATCGTACGTATACGTTGGCAGTTTTGCTAGTGCTATGAGACTATCCAAACCTTTTCTTT----TTACCAAATATAGAT
GAGAACATCCTGGTCCGAAAGGGTGACTGCACATTCTCCTTAGCAGGTAACCTCTAGATAGCCTCCCCCAAATTCATAAA
C------TTTGCTTTCATGAAAAATTTATCTAGTTTGGGGC-TGACAACTAAAACATAGAGGAACTAGTTGGGTATGTTC
CACTACATGCACAATAGGAAGAAGAGAAGACTTT-ACAATATAATTTCTTATATG-----AACTAACGAGTGGCTCATTT
CTCATGATGTTCATCTCCATTTTGTAGGACTACTTCTCAAAATGGGAACAAGAGGGCATAATTGATCTAAAGCATGAGCT
GGCAGAGGTACTCATGCTAATCGCAAGCCGTTGCTTGCTTGGAAAAGAGGTCCGTGAGAAGATGTTCGAAGAAGTCTCTG
TGCTCATCAATGATCTCTGCAAAAATGGCATGCACTTCATCAGCCTTTTTTTTCCATATATCCCAATCCCAGCCCACCGG
CAACGCGACAAAGCGCGTGCGAAGCTGGGACATATATTCCATGAGATAGTGAGATCACGTAAAATCTCAGGCCAAGTTGA
GGATGATGTGCTACAAAAACTTATAGACTCGAAATGCATGGAGGATGGCCGCTCTATGACCGAGAGTGAGATTACCGGGC
TACTCATTAGCTTGTTGTTTGCTGGGCAACATGCGAGCTCAAGCGCTGCCTCCTGGGCGGGAGCTTGTCTAATAAGCCAT
GAAAAGTACTTAGCAGCCGCTGTAGAAGAGCAACAGAAAATCATTAGAAAACACGGACAACATGT------AGATTACAG
CATCTTGTTAGAGATGGGAACCTTGCATTCCTGCATCAAAGAGGCAATAAGAATGCACTCTCCATCAGCAATGGTAATGC
GCCACGTGAAGAAGAACTTCACTGTACAAACAAGAGAAGGCTACAGCTATGAAATTCCAGAAGGGCATACCGTAGCTACC
TCTATAGTGGTTGGCAACCAGCTACCACATATTTATAAAGACCCTCATGTATATGACCCGTACCGTTTTGGTCCAGGGAG
AGAGGAGGACAAAGCTGGCGGCAAGTTTGCATTCACATCATTTGGTGGTGGGAGGCATGCTTGCTTCGGGGAGGAATATT
CTTACATGCAAATTAAAGTGATATGGAGTTTTTTGCTGAGGAACTTTGAGCTCAAAATGATTTCGCCTTTTCCAGAGGAA
GAAATTGATAAATTCATACCAGGGCCTAAAGGAAGAGTGATGGTCAGTTACAAGAGGCGACTTCTTGTCAGTACCTAGCT
A--ACTGATGAGATCGTAATTAAGGGTGGTTGTAATAAGTTTGTACTG----TTATGTATATATGTCTACTTATGTAAGC
AGTCCCTTGCGAGTTGCAATGTACGTATCGTCCTTTTAATAAAAAGTACATGTAAGCCCATACCTTCAACTCGCAAAAAA
CAAAATCCATCCCTTGAGGTGTGACATGTCGCCCTTCCTC-----TATTTGAGAACATATCACCAAAAATGGTTCGGCTC
TATGTTTTTCTGTGGTGGATGGCTGAGAGTCGGATGATGTGCTAAGAACTCATCTTGCAGAGTTGCAAGTGCATCGTAGC
TTCATATGTTTTGACATTTCCCATGTCACGATTGATGCTTTGAAATAGAATCATTATTATTCTTTTTTTTTTCTCAATAA
AGGGTGCTTTTATTAATTCAAAATATATCAAGAATAAGAATTATTAAGACAATAAGTATAAAGAGTATAATAAAACTAAT
AACAGAAGACGTGTGGTATGGTACGATTAGTTTTATGGAAGAAATTATTCATTTCTTATGCATAGACCTTGTGTAATCAT
CTGTCATTTTTAGGTTAAGATGGGCGCATAGCATTTCTTATGCTATGAAGAAAATATTCATCGTAGCATCATTGTAGAAC
CGGTTGCTAGGCCGAGCTCCACCGGTCAAAATCCATGTGACGACCGTCGGGGCAGAGAGTCAATGGGAGGATGTCGCCCG
AGGCAGAGGAGGACGAGAGATTAATTAAAGAAGATGGAGAAGGGAATCGAAGATAGGGTCGGAGTCGGTCATCTGATTCT
GATTCTGATCTGATTGCACAAGCACAAAACTGGGCTGAGATAACTTTGGAGTGGAAGGGGCTCCGGATTTTGGTA-----
-----------GTTCAAATCTTCACTCTAGCTAGTATATATCCATGTAATAGCGTGTGTAAACCTCCCGCCATTTGGTTG
GA--------------CACCAAAACTAAGAGAGAAAGAAAACAAGGCAACCGAAATGAAAGAAAGAGCACAACCATTCCC
AAAACGTTTATCAGAAATTTCAGAGTGGATTTTCTCAGTCTTTTAGCGCAAACGTCAAGAGCACAGAGTACACATTCTCT
TCAGTTCTGCAATCGACACGCGGAGACATGATTAAAAA------------------------------------------
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>SNPs
---------S--------------------------------------------------S--------------SS---
------------------------------------------------S-------------------------------
----------------------------------------------------SS--------------------------
--------S------S-------------------------------------------S--------------------
S----------------------------------------S---S----------------------------------
----------------------------------S--------S------------------------------------
---S----------------------------------------------------------------------------
----------------------------------------------------------------------S---------
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---------------S----------------------------------------------------------------
---------------S----------------------------------------------------------------
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--S-----------------------------------------------------------------------------
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----S-----------S------------S------------S-------------------------------------
--------SS-SSS-SSSSSSS----------------------------------------------------------
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------------------------------------------------------------------------------S-
---------------------------------------------S--------------------S-------------
---------------------------S-----------------S---S------------------SSSS-SSSSS--
SSSSSSSS-SSSS-SS---SSS-S-SSSSSSS-SS-SSS-SSSSSS----------------------------------
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-----------------------------------------------------------------SSSSSSSS-------
----------------------S-S--S--SS---------------------------S---------------SSSSS
SSSSSSSSSSS------------------------------------------------------S-----------S--
--SSSSSSSSSSSSSS-------------SS-------------------S---------------------S-------
-------------------------------------------------------------------S-----------S
------------------S--S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_631
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-------------------------------------------------GTCCGTGAGAAGATGTTCGAAC---------
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>reverse_2778
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---------------------------------------------------------GCATTTATCCCGGTTCGTGC---
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