>input_sequence_79414
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------------------------------------------------ATGGCGCCCTCCAAGCTCACCCTCTTCCTCGC
CCTGAGCCTGGTGCTCGTGGGAACCTCGCACGGTTGCGGATCGTGCGGCAACACGCCGTCCGTGCCAGTCCCAACGCCGC
CGATCGCCGTGCCCCCGCCGGCCCTCCCAGTACCAACCCCGCCGG-----------------------------------
-------TCGCCGTGCCCCCGCCGGCCGTCCCAGTACCAACCCC------------TGGTGGCGGCGGTACCTGCTCGAT
CAACACGTTGAAGTTGAGCGCGTGCGCCAACATACTGAACCTGCTGGAGCTCAACCTCGGCGTGCCGGCGAGCGAGCAGT
GCTGCCCGCTCCTGAGGGGCCTCGCCGACCTGGACGCCGCCGTGTGCCTCTGCACCGCCATCAAGGCCAACGTTCTGGGC
ATCAAGGTCAACGTCCCCGTCGACCTCGTGCTGCTTCTCAACCAGTGCGGCAAGACCTGCCCCGCCGACTTCACCTGCCC
TAGCTAA-------------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G367700
TCATTCCACTCCGTATGTAGTCAATAGTGAAGTCTCTAAAAAAGACTTATATTTAGTTTAGGAACGAAGGGAGGAGTGCG
GCTAATCTGCACCCGGACTCATCTGCACCCACGCTTAGAAAAAAATTCAAAAAAAATACTAGAAAAATTAAAAAAATTCC
AATTTTTTTTGTGGTGGTAGATAATTTGACGCGTGAGGTGCGCACCAAAATTCAACTCATTTGAGCATCTGAGCAGCTCT
CGGCAAAAAAGACAAAATCAGGGTCTGTAAAAATGTATACTGTTCACGCACTGTTTTGACCCGATTTGTCTTTTTTGCCG
AGAGCTTCTCAGATGTCCAAATGAGTTGAATTTTGGGGCGCACCTCACGCGTCAAATTATCTAGCACCACAAAATTTTTG
GATTTTTTTGAATTTTTCTAGTATATTTTTTTTAATTTTTTACTGAGAGGGAGCAGATGAGCCCGGGCACCGTTTTGAGT
TTTCCTGAAGGGAGTATATTATTGTCCATACTACTCCCTCCGTTCCTAAATATAAGTCTTTGTATGGATTTCATTAGGTG
GACTACGTACGGAGCAAAATAAATGAATCCAAACTTAAAATGCATCTATATATATCTGTATGTGGTTCATAGTGGAATCT
CTACAAAGACTTACATTTAGGAACGGAGAGAGTATATTTTTGTGTCAAATTTTCTAGGAAAAGCTCTCGTGTTTCTGTTC
GTTAGCAAACGAGTTAAGCTCCAGTAATCGTACACACGTACGTACCATCCAACAATTGTG----TAGTAGTAGTGGTGGT
TGCGCATATTTTTTTGCAAATTGCGGCAAGAGTCAAATTGGATCGATCATGACATGAACTATGCAGTTGCACTTGGGCGC
TGCACCCCGGCCTAGCTATAAATACCACCCCAAGCAACCCAGGAAAAGCATCCCAAGCTAGCAAAGCCCACCTAGCGCTC
AGCCACAAGCCAGTACACTCTAGCTAGCTACTAGCTTC----ATAGCAATGGCGCCCTCCAAGCTCACCCTCTTCCTCGC
CCTGAGCCTGGTGCTCGTGGGAACCTCGCACGGTTGCGGATCGTGCGGCAACACGCCGTCCGTGCCAGTCCCAACGCCGC
CGATCGCCGTGCCCCCGCCGGCCCTCCCAGTACCAACCCCGCCGG-----------------------------------
-------TCGCCGTGCCCCCGCCGGCCGTCCCAGTACCAACCCC------------TGGTGGCGGCGGTACCTGCTCGAT
CAACACGTTGAAGTTGAGCGCGTGCGCCAACATACTGAACCTGCTGGAGCTCAACCTCGGCGTGCCGGCGAGCGAGCAGT
GCTGCCCGCTCCTGAGGGGCCTCGCCGACCTGGACGCCGCCGTGTGCCTCTGCACCGCCATCAAGGCCAACGTTCTGGGC
ATCAAGGTCAACGTCCCCGTCGACCTCGTGCTGCTTCTCAACCAGTGCGGCAAGACCTGCCCCGCCGACTTCACCTGCCC
TAGCTAAATCCATTGATACATCGATCGAGCTAAATATCACAAACTATGCATGTTATACTTATATGTGCATGAGTAG----
--TCGTGGCT-CG----TGCATGCATACATGCTTACGTTTTCTTTCTTGCACTGACTATGCATAAGCTAGTCATCGATCA
TTGTATTCCCTACGTTATGGTATCTAGATGATTCCCATATTTGTAAAATTATATACATACTTGTACACATACGTGGAATA
AAAAGTTTGTTCATGTTGTGTTAACCAG-----------------------------------ACCTTCTCGCATGCATT
GGCTACATCACTTTTCTTTTTTGCTTTTTTCAGAAAGGCGGTTGAAACCCTGGCCTCTGCATCTCCTTTCTAATCATGGC
CTCTCTTCTT----------------------------------GCATATACTGAATTGCCCGCAAATGTTTGGACCGAA
TAGTATGGGCATGTTTTGTCACCCAACGGCGGTCACCAGTTGTCCACGGACAATAGGTTAGGTGGTCCGGATGTCCGAAT
TTCCTCAAATCGGCACCAAACCTACGGGAGCCTTGGGGGAGTCTGGACAGGCCGCGGAAACGCACCACAAATCCGTGTTT
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACAAGGGGCGGACATTTGGTGAATG
AGGTTGGATGGCAGGCAGCCGCCCGTCTGGTAGCGGCGCCAGGTTGATGCCACACCAAAGGAAAAACAGCGTATTTATAG
TGCGACATGGTGCCAAATAATATAGTTGTACCAATAGACAACAAAGGGTCAGCCTAGGACACCCTAGGTTGAGGCCCTGG
CTGCCTGGGGCATGGCGCCGCCCCTGCGCCTAGCTATCCCCAGGCAC
>chrUn_673
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--------------------------------TATATTTTTCTATCAAATTTTCTAGGAAAAGCTCTTGTGTTTCTGTTC
GTTAGCAAACGAGTTAAGCTCCAGTAATGGTACACACGTA----CCATCCAACAATTGCG----TACTAGTAGTGGTGGT
TGCGCATA-TTTTTTGCAAATTGAGGCAAGAGTCAAATTGGATTGATCATGACATGAACGATGCAGTTGCACTTGGGCGC
TGCACCCCGGCCTAGCTATAAATACCACCACAAGCAACCGAGGAAAAGCATACCAAGCTAGCAAAGCCAACCTA--GCTC
AGCCACAAGCCAGTACACTCTCGCTAGCTACTACGTAGCTTCGTAGCAATGGCGCCCTCCAAGCTCACCCTCTTCCTCGC
CCTGAGCCTGGTCCTCATGGGAACCTCGCACGGTTGCGGATCGTGCGGCAACACGCCGTCCGTGCCAGTCCCAACGCCGC
CGATCGCCGTGCCACCGCCACCCGTCCCAGTACCAACCCCGCCG------------------------------------
------ATCGCCGTGCCCCCGCCGGCCGTCCCAGTACCAACCCC------------TGGCGGCGGCGGCACCTGCTCGAT
CAACACGTTGAAGCTGAGCGCGTGCGCCAACGTACTTAACCTGCTGAAGCTCAACCTCGGCGTGCCGGCGAGCGAGCAGT
GCTGCCCGCTGCTGAGCGGCCTCGCCGACCTCGACGCCGCCGTGTGCCTCTGCACCGCCATCAAGGCCAACGTTCTCGGC
ATCAAGCTCAACGTCCCCGTCGACCTCGTGCTGCTTCTCAACCAGTGCGGCAAGACCTGCCCCGCCGACTTCACCTGCCC
TAGCTAAATCCA-GGATACATCGATCGATCTAAATATCACAAACCATGCATTTTATACTTATATATGCATGCGTAG----
--TCGTCGCT-CGTGCATGCATGCATGCATGCTTACGCTTTGTTTCTTGCACTGACTATGTATAAGCTAGTCATCCGTCA
TTGTATCCCGTACGTTATGGTATCTAGATGATTCGCATATTTGTAAAATTATATAC----TTGTACACGTACGT-GAATA
ATAAGTTTGTTCAAGTTGTGTTAAATAGACCCGTGATATGTCCTCAATAATAATCACATCCACACCTTGTCGCATGCATT
GGCTACATCACCTTTCTTTTTT-CTTTTTTCAAAAAGAAGGTTGAAACCCTGGCCTCTGTATCTCCTTTCTAATCATGAC
CTCTCTTCTTTCATTTTCTGCCAGTTACTCAGGGAAACTCCAACGCAGATACTGAATCGCTCACAAATGCTCGGACCGAA
TAGTATGGGCATGTTTTGTCACCCGATGGTGGTCACCAACTGTTTATGAAATAGGCTAGTC--GGTCCGGATGTCCGAAT
TTCCTCAAATCGGCACCAAGCCTAGGGGAGCCTTGGGGGAGTCTAGACAGGCTGTGGAAA--------------------
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>chr5A_673
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--------------------------------TATATTTTTCTATCAAATTTTCTAGGAAAAGCTCTCGTGTTTCTGTTC
GTTAGCAAACGAGTTAAGCTCCAGTAATGGTACACACGTA----ACATCCAACAATTGTG----TACTAGTAGTGGTGGT
TGAGCATA-TTTTTTGCAAATTGCGGCAAGAGTCAAATTGGAATGATCATGACATGAACGATGCAGTTGCACTTGGGCGC
TGCACCCCGGCCTAGCTATAAATAACACCCCAAGAAACCCAGGAAAAGCATACCAAGCTAGCAAAGCCAACCTA--GCTC
AGCCACAAGCCAGTACACTCTAGCTAGCTACT----AGCTTCGTAGCAATGGCGCCCTCCAAGCTCACCCTCTTCCTCGC
CCTGAGCCTGGTCCTCGTGGGAACCTCGCACGGTTGCGGATCGTGCGGCAACACGCCGTCCGTGCCAGTCCCAACGCCGC
CGATCGCCGTACCACCGCCAGCCGTCCCAGTGCCAACCCCGCCGATCGCCGTGCCCCCGCCGGCTGTCCCAGTACCAACC
CCGCCAATCGCCGTGCCCCCGCCGGCCGTCCCAGTACCAACCCC------------TGGCGGCGGCGGCACTTGTTCGAT
CAACACGTTGAAGCTGAGCGCGTGCGCCAACGTACTGAACCTGCTGAAGCTCAACCTCGGCGTGCCGGCGAGCGAGCAGT
GCTGCCCACTGCTAAGCGGCCTCGCCGACCTCGACGCAGCCGTGTGCCTCTGCACAGCCATCAAGGCCAACGTTCTTGGC
ATCAAGCTCAACGTCCCCGTCGACCTCGTGCTGCTTCTCGACCAGTGCGGCAAGACCTGTCCCGCCGACTTCACCTGCCC
CAACTAAATCCATGGATACGTCGATCGATCTACATATGACAAACCATGCATGTTGTAC------ATGCATGCGTAC----
--TCGTCGCCCCG----TGCATGCATGCATGCTTACGTTTTCTTTGTTCCACTGAGTATGTATAAGCTAGTCATCGATCA
TTGTATCCCGTACGTTATGGTATCTAGATGATTCGCATATTTGTAAAAGTATATACATACTTGTACACGTACGTGGAATA
AAAAGTTTGTTCAAGTTGTGTTAGCTAGACC-------------------------------------------------
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>chrUn_704
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---------------------------------------------------------------CTCTCGTGTTTCTGTTT
GTTGGCAAACAAGTTAAGCTCCAGTAATGGTCCACACGTA----ACATCCTACAATTGTGTACTTACTAGTAGTGGTGGT
TGCGCATA-TTTTTTGCAAATTGCCGCAAGAGTCAAACTGTATTGATCATGACACGAACGATGCACTTGCACTTGCGCAC
TGCACCCCGGCCTAGCTATAAATACCACCCCAAGCAACCAATGAAAAGCAT--CAAGCTAGCGAAGCCCGCCTA--GCTC
AGCCACAAGCCAGTACACTCTAGCTAGCTACT----AGCTTCATAGCAATGGCGCCCTCCAAGCTCACCCTCTTCCTTGC
CCTGAGCCTGGTCCTCGTGGGAACCTCGCACGGTTGCGGATCGTGCGGCAACACGCCGTCCGTGCCAGTCCCAACGCCGC
CGATCGCCGTGCCACCGCCGGCCGGCCCAGTGCCAACCCCGCCGATCGCCGTGCCCCCACCGGCCGTCCCTGTACCAAGC
CCGCCCATCGCCGTGCCCCCGCCGGCCGTTCCAGTACCAACCCCGCCGACGCCCGGTGGCGGCAGCGGCACATGCTCGAT
CAACACGTTGAAGCTGGGCGCGTGCGCCAACGTACTGAACCTGCTGAAGCTCAACCTCGGCGTGCCGGCGAGCGAGCAGT
GCTGCCCGCTCCTGAGCGGCCTGGCCGACCTAGACGCCGCAGTGTGCCTCTGCACCGCTATCAAGGCCAACGTTCTCGGC
ATCAAGCTCAACGTCCCCGTCGACCTCGTGCTGCTTCTCAACCAGTGCGGCAAGACCTGCCCCGCCGACTTCACCTGCCC
TAGCTAAATCCATGGATACATCG-TCGATCTAAATATCACAAGCCATGCATGTTATACTTATATATGCATGCAGTCGTCG
GCTCGTCGCT-CG----TGCATGCAGAAATGCTTACGTTTTCTTTCTTGCACTGACTATGTATAAGCTAGTCATCGATCA
TTATATCTCGTATGTTATGGTCTCTAGATGATTCGCATATTTGTTAACATTTATACATACTTGTACACGTACGTGGAATA
AAAAGTTTGTTCAAGTTGTGTTAGCTAGAC--------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-S------------------------------------
----------------------------S-----------SSSS----------------------S-------------
--------S----------------------------------S---------------S--------------------
---------------------------------------------------S----------------------SS----
---------------------------------SS-SS------------------------------------------
------------S-------------------------------------------------------------------
-------------S---------S--------------------S-----------------------------------
-----------------------------------------------------------S--------S-----------
-------------S-----------------S--------------S---------------------------------
----------------S--------------S--------------------------------------------S---
------S-------------------------------------------------------------------------
-------------S--------------S---------------S-------------------S------S--------
------S-----------------------------------------------------S-------------------
------S--S------------------------S---------------------------------S-----------
-------------S-----------S------------------------------------------S-----------
-----------S----------S---------S----SS--------------------S------------------S-
-----------------------------------------------S---------S--S-S------S-S--------
------------------------S-S--S--------SS---SS-S-S-SS-SSSSSSSSSS-----------------
-------------------S----S-------------------S-------S-S-----SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_363
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-----------------------AGTTGAATTTTGGGGCGCAC-------------------------------------
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>reverse_2141
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------------------------------------------------------------CGCACCACAAATCCGTGTTT
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