>input_sequence_79364
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---------------------------------------------------------ATGGCAACTCTGAAAGATGCAGT
AGCACGGAAGCCTATACTGGCAACAATCCGCCTGCTTGTTCCAGCTGGTGCTGCACGTCCTGCACCACCAGTTGGTCCGG
CACTCGGTTTTTATAGGCTCAATTTGATGGCGTTCTGCAAGGATTTCAATGCAAGGACCCAGAAATACAAGGCAGAAACT
CCTATGCAGGTCACGCTAACTGCCTACAAAGATAGCACTTTCGAGTTTGTAGTCAAGTCGCCGTCCGTTTCATGGTTCCT
CAAGAAGGCAGCAGGAATTGAGACCGCCAGCACTCGTCCTGGTCACAACGTTGTGTCATCCCTAACACTCCGCCACGTTT
ACGAGATTGCAAAACTTAAACAAGCTGACCCCTTCTGCAAGCATATGTCACTCGAGGCGTTGTGCAAATCTATCATTGGC
ACAGCTAACTCAATGGGCATTGAGATTGTCAAGGATCTCTGA--------------------------------------
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>chr1A_1_TraesCS1A01G147700
TTGATCTAGGGGTCACTTTATTTATGTATTTTTTGAGACTGTTTGCAGAGCATCCAGATATTGCAAGTCAGTGTCCAACA
AGTTGTCTGCCTGAATAAAATGTTGTTTTAGTTGGTCTCCTCATCTGAAATAGATTCCGCGAGCTGACAAGCCAAGTAAC
TGTATGAAAGTAATGATCAA-ATAGAGCAATTATTATGTATCTTTGGATTATACTTTCAATTGCGAGCATCTACAGTGGG
TTTCCCCATTGGTGCGTTGAACTCGCTTCTTCCCTTTCCCATCTCCTGAACAATCTTGGATCGGCTTTATATTTACGTTA
TGCTTCAATGGAAAGGGGTTTAGCCCGGTT--AAAAAAAAGTATCTTTGGAAAAACAGTATGTAGTTGGTCTCCTCATCT
GAAATAAAACGTTGTTTTAGTTGGTCTCCTCATCTGAAATAGATCCACTGAGCTGACAAGCCAAGTAACTTTATGAAAAT
AATCAAAATAGAGCAATTCTTATGTATCTTTGGAAAAACAATAGAGGACATAGTTCCAGAAGGTTCATTGGATTGCCCAG
ATATAT--------TACTTCATCCGCAAAAGCCAATCAGTTGCGCCAATCAGTCTGACTGCTTGTAACCACATGTTAGTA
GAATTGTTCATCATTTGACCACATTCTAGGCTATGTTGGATTGACTGAAGAGGGTGTCGAAAGAGACTAGGAATAGTCTG
TAAATTGCTTCTGCTTAGAGCAGGTCAAGGAATTTCCATGCCACTGT--AAATCACCTTTCCTCCGACGCTAGCTCTTCA
GGTACATTACAAGTGTATCTTTGGCATCTAGTGGAATATAATTCAAAAGTTAAAGCCTTCGAGGAGGCAGATTGCAGACC
CTAAGTCTGTTATGATGT---TGCTTTCAGCAAACACTTGTTG-AGTTGTCTTGCAATTTTTTCATGAAATTCGTTGAAA
ACTCTGCTAATTCCATTTAAACTCTCGTGTTTACTGCAGATCTACTAAAGCAATCACATGGCAACTCTGAAAGATGCAGT
AGCACGGAAGCCTATACTGGCAACAATCCGCCTGCTTGTTCCAGCTGGTGCTGCACGTCCTGCACCACCAGTTGGTCCGG
CACTCGGTTTTTATAGGCTCAATTTGATGGCGTTCTGCAAGGATTTCAATGCAAGGACCCAGAAATACAAGGCAGAAACT
CCTATGCAGGTCACGCTAACTGCCTACAAAGATAGCACTTTCGAGTTTGTAGTCAAGTCGCCGTCCGTTTCATGGTTCCT
CAAGAAGGCAGCAGGAATTGAGACCGCCAGCACTCGTCCTGGTCACAACGTTGTGTCATCCCTAACACTCCGCCACGTTT
ACGAGATTGCAAAACTTAAACAAGCTGACCCCTTCTGCAAGCATATGTCACTCGAGGCGTTGTGCAAATCTATCATTGGC
ACAGCTAACTCAATGGGCATTGAGATTGTCAAGGATCTCTGAGTGGATTGGCTCGTCTCCAATACTACCAAGCTCCTACC
TTCCCAGGTGACATTTGTGAGCTGTAGTTTCTCATTGATGTGGGAGAAGATGGGAGTTTTTCAACTGTTGATCCTTACTG
AGCTCTTCAGCCCAGGCAATATTTTCATTTTCTTCATACCCAGTCTTCAGCTGTTCCTGCTGCAATGTTGATCTCTTCCA
T-GGGAGATATTTCACGGAAAATAATGTTACTTCTAAG---CTTGCGCCAGACGAACAATATTATCCATTTCTGTTACCT
TGCCAAGTTGCTAGTTGTTTGTTTACTTTTGGTATCATTGTCATTTCTCGTGTAATGGCAATGTATTTGAAACACAAATA
TGTAATGGTTAATTTTGGTGCTTTTACATGACTTTTACTTGC--------------------------------------
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--------------------------------------------------------AACTTTAAATATCTTATCATTCTC
AGATCTTTCT----CAGTGTAATCAGCAGTTAACTCTGCTAATTCT----------------------------------
------------------------------ATTTGATGGAATGAACAGCAGCACACGATATTTAAA---------CAGT-
-----------------CATACTCAACAGATATT-GCTTCTTCTTTTTTTTGGTTAGGCAGCATCAAATAAGCCGAATTC
TGAG--TGTGGCTTCCAACTAAAGCATAATCCCTCTGTTCAAAATACTTGTCGCGGTTTTAGTTCGAACTTAACTGAAAC
CATGACAAGTATTTTGGTACAAAGGGAGTACAAGCAATCTTATGTATCGACTAAAATACTTTTTGCATCTTACTGTTCCA
AGGGAATGGCCAATACCAGAGTAGGAATTTAGAGTTAGAATTTACAGCCAATTCATGGACGAATCTGAATTGAAAATCTT
ACCAAAGTAGGAATTAAGATTTGGGATTTACAATCAGCTCGGGGAAATCTGAACCTAAAATCTCGCACAGTAAATTCAAA
TAAATAGCAACGTATTATTCTTTGATTTCCTCAAGAACAAGGTACTGTAAAGCTATTGAGTATTTAGCTGCTCTTGCTTC
CTTGGTTCCACTTTGTGGAGTGCTAATGTTCTTGAGTA
>chr1D_1
TTGATCTAGGGGTCACTTTATTTATGTATTTTTTGAGACTGTTTGCAGAGCACCCAGATATTGCAAGTCAGTGTCCAACA
AGTTGTCTGCCTGAATAAAACGTTGTTTTAGTTGGTCTCCTCATCTGAAATAGATTCAGTGAGCTGACAAGCCAAGTAAC
TGTATGAAAGTAATGATCAAAATAGAGCAATTGTTATGTATCTTTGGATTATA-TTTCGATTGCGAGCATCTACAGTGGG
TTTCCCTGTTGGTGCGTTGAACTCGCTTCTTCCCTTTCCCGTCTCCTGAACAATCTTGGATCGGCTTTGTATTTCCGTTA
TGCTTCAATGGAAAGGGGTTTAGCCCGGTT--AAAAAAAAGTATCTTTGGAAAAACAGTATGTAGTTGGTCTCCTCATCT
GAAATAAAACGTTGTTTTAGTTGGTCTCCTCATCTGAAATAGATCCACTGAGCTGACAAGCCAAGTAACTTAATGAAAAA
AATCAAAATAGAGCAATTGTTATGTATCTTTGGAAAAACAATACAGGAGATAGTTCCAGAAGGTTCATTGGATTGCCCAG
ATATAT--------TACTTCATCCGCAAAAGCCAATCAGTTGCGCCAATCAGTCTGACTGCTTGTAACCACATGTAAGTA
GAATTGTTCATCATTTGACCACATTCTAGGCTATGTTGGATTGACTGAAGAGGGTGTCGAAAGAGACTAGGAATAGTCTG
TAACTTGCTTCTGCTTAGAGCAGGTCAAGGAATTTCCATGCCACTGTGTAAATCACCTTTCCTCCGACGCTAGCTCTTCA
GGTACATTACAAGTGTATCTTTGGCATCTAGTGGTATATAATTCAAAAGTTAAAGCCGTCGAGGAGGCAGATTGCAGACC
CTAAGTCTGAT---ATGA---TGCTTTCAGCAAACACCTGTTG-AGTTGTCTTGCAATTTTTTCATGAAATTCGTTGAAA
ACTCTGCTAATTTCATTTAAACTCTCGTGTTTACTGCAGATCTACTAAAGCAATCACATGGCAACTCTGAAAGATGCAGT
AGCACGGAAGCCTATACTGGCAACAATCCGCCTGCTTGTTCCAGCTGGTGCTGCACGTCCTGCACCACCAGTTGGTCCGG
CACTCGGTTTTTATAGGCTCAATTTGATGGCATTCTGCAAGGATTTCAATGCAAGGACCCAGAAATACAAGGCAGAAACT
CCTATGCAGGTCACGCTAACTGCCTACAAAGATAGCACTTTCGAGTTTGTAGTCAAGTCGCCGTCCGTTTCATGGTTCCT
CAAGAAGGCAGCAGGAATTGAGACCGCCAGCACTCGTCCTGGTCACAACGTTGTGTCATCCCTAACACTCCGCCACGTTT
ATGAGATTGCAAAACTTAAACAAGCTGACCCCTTCTGCAAGCATATGTCGCTCGAGGCGTTGTGCAAATCTATCATTGGC
ACAGCTAACTCAATGGGCATTGAGATTGTCAAGGATCTCTGAGTGGATTGGCTCGTCTCCAATAGTACCAAGCTCCTACC
TTCCTAGGTGACATTTGTGAGCTGTAGTTTCTCATTGATGTGGGAGAAGATGGGAGTTCTTCAATTGTTGATCCTTACTG
AGCTCTTCAGCCCAGGCAATATTTTCATTTTCTTCATACCCAGTCTTCAGCTGTTCCTGCTGCAATGTTGATCTCTTCCA
T-GGGAGATATTTCATGGAAAATAATGTTACTTCTGAG---CTTGCGCCAGACGAACAATATTATCCATTTCTGTTACCT
TGCCAAGTTGCTAGTTGTTTGTTTACTTTTGGTATCATTGTCATTTCTCGTGTAATGGCAATGTATTTGAAACACAAATA
TGTAATGGTTAATTTTGGCGCTTTTACATGACTTTTACTTGC--------------------------------------
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--------------------------------------------------------AACTTTAAATATCTTATCATTCTC
AGATCTTTCT----CAGTGTAATCAGCAGTTAACTCTGCTAATTCT----------------------------------
------------------------------ATTTGATGGAATGAACACCAGCACACGATATCATTGAAAGAGAAGCAGT-
-----------------CATACTCAACAGATATT-GC-----CTTTTTTTTGGTTAGGCAGCATCAAATAAGCCGAATTC
TGAG--TGTGGCTTCCAACTAAAGCATATTCCCTCTGTTCAAAATACTTGTCGTGGTTTTAGTTCGAACTTAACTGAAAC
CATGACAAGTATTTTGGTACAAAGGGAGTACAAGCAATCTTATGTATCGACTAAAATACTTTTTGCATCTTACTGTTCCA
AGGGAATGGCCAACACCAGAGTAGGAATTTAGAGTTAGAATTTACAGCCAATTCATGGACGAATCTGAATTGAAAATCTT
ACCAAAGTAGGAATTAAGATTTGGGATTTACAATCAGCTCAGGGAAATCTGAACCTAAAATCTCGCACAGTAAATTTAAA
TAAATAGCAACGTATTATTCTTTTATTTCCTCAAGAACAAGGTACTGTAAAGCTATTGAGTATTTAGCTGCTCTTGCTTC
CTTGGTTCCACTTTGTGGAGTGCTGATGTTCTTGAGTA
>chr1B_4
---ATCTAGGGGTCACTTTATTTATGTATTTTTTGAGACTGTTTGTAGAGCACCCAAATATTGCAAGTCAGTGTCCAACA
AGTTGTCTGCCTGAATAAAACGTTGTTTTGGTTGGTCTCCTCGTCTGAAATAGATTCAATGAGCTGACAAGCCAAGTAAC
TGTATGAAAGCAATAATCAAAATAGAGCAATTGTTATGTATCTTTGGATTATG-TTTCGATTGCGAGCATCTACAGTGAG
TTTCTTAGTGAC-GCGTTGAACTCACTTCTTCCCTTTCCCGTCTCCTGAACATTCTTGGATCGACTTTGTATTTTTATTA
TGCTTTAATGGAAAGGGGTTTAGCCCGGTTCCAAGACAAAGCATGTTTGGAAAAACAGTATG------------------
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---------------------------------------------------AGTTCCAGAAGGTTCATTGGGTTGCCCAG
ATATATTGCAGTATTACTTCATCCCCAAAAGTCAATCAGTTGCGCCAATCAGTCTGACCGCTTTTAACCACATTC---TA
GAATTCTTCATCATTTGACCACAATCTAGGCTATGTTGGATTGACTGAAGAGGGTGTCAAAGGAGACTAGGAATAGTCTG
GAACTTGCTTCTGCTTAGAGCAGGTCAAGGAATTTCCATGCCACTGTGTAGATTGCCTTTCCTCCAAGGCTAGCTCTTCA
GCTACATTACAAGTGTATCTTTGGTATCTAGTGGTATATATTTCAAAAGTTGAAGCCGTCGAGGAGGCAGATGGCAGGTC
CTAAGTGTGAT---ATGATGTTGCTTTCAGCAAACACTTGATTAAGTTGTCTTGCAGTTTTTCCATGAAATTCGGTGAAA
ACTCTGCTAATTCCATGGAAACTCTCTTGTTTACTGCAGATCTACTAAAGCAATCACATGGCAACTCTGAAAGATGCAGT
AGCACGGAAGCCTATACTGGCAACAATCCGCTTGCTCGTTCCAGCTGGTGCTGCCCGCCCTGCACCACCAGTTGGTCCGG
CACTGGGTTTCTATAGGCTCAATTTGATGGCATTCTGCAAGGATTTCAATGCAAGGACCCAGAAATATAAGGCAGAAACT
CCTATGCAGGTCACCCTAACCGCCTACAAAGATAGCACTTTCGAGTTTGTAGTCAAGTCGCCGTCCGTTTCATGGTTCCT
CAAGAAGGCAGCAGGAATTGAGACCGCCAGCACTCGTCCTGGTCACAACGTTGTGTCATCCCTAACACTCCGCCACGTTT
ATGAGATTGCAAAACTTAAACAAGCTGACCCCTTCTGCAAGCATATGTCGCTCGAGGCGTTGTGCAAATCTATAATTGGC
ACAGCTAACTCAATGGGCATTGAGATTGTCAAAGATCTCTGAGCGGATTGGCTTGTCTCCAATAGTACCCAGCTCCTACA
TTCCTCAGTGACATTTGTGAGTTTTAGCTTTTCATTGATG------------------------------ATCCTTACTG
AGCTCTTCAGACCAGGCAATACTTTCATTTTC-TCATACCCAGTCTTCAGCTGTTCCTGCTGCAATGTTGATCTCTTCGA
TGGGAAGATATTTTACGGAAAATAATGTCACTTCTGAGCTTCTTGCGCCAGACGAACAATATTTTTCATTTATGTTACCT
TGCCAAGTTGTTAGTTGTTTGTTGACTTTTGGTATCAGTTTCCTTTCTCGTGTAATGGTGATGTATTTGAAACACAAATG
TGTAATGGTTAATTCTGGCGCTTTTACATGATTTTTACTTGCAACTTTAAATATCAGTACAGGCAGGGCGTCTAGCATCC
CACTTGCTCTCTTTCACCGGTGTGGACTGTCCGGTGGCTCCTAATGTTTGGGACAAGATCATACCCAATAAGCATCGAGT
TATTCTGTGGCTTCGGCTGAACACCAGGATAACATGATGGAAAAGCATTGGGCGGCGCTTGTGCAGCACAATGGATGTGA
TGTATGTCCAGCCGTGGAGTCCAGCTGCCACATTCTTCTTCGTTGTAAGCTTGCAAATGCTGTTTGGGAGAAATTAGGCC
TATCTGACCCAGCACGGGGCTCATCCGATCTGCATGGCTTCCTTCTTTCGCCAGCTACAAGACACAAGTACGTCAAGCTG
TGGCACATCCTATTTGCAGCCTGCGTGGTTGCACTTTGGAATGGACGTAATGCTCGAGTTTTTGACAATGCCAGATGGTC
GTCAGCAAAAACCTTCTCTGCAATTGCAACTCTTATTAGGTTGTGGTGTTTTAGAGCACCGGGGGATGATGATCGAGCTG
TGTTATGTGGTTGGTTGACATAGTTGAATAAGCTGCCTTCTCTGACCCCCAACACCCCCACCATGTACTTGCTTTTCCTT
CTTCAGGCTTGGTGATGGCCTGCTGCATGATCCGTGCAGCGTTAACATTACCTTCATGTAATTGGCCATTGTCATTCGGG
CCCTTGCCTGTTTTGAATGCATAAGGTAGATCATGATCTACCTTTTCTTTTAAAAAAACATTAAATATCTTATCATTGTC
AGATCTTTTTCTTCCAGTGTAATCAGCAGTTAACACAACTCATTACCAGAGCCTTGGATTCAGTATTATTCTAGTTGTGT
ATCCCAGGGATAGGGAATTGGGAGTAGCCAATTTGATGGAATAAACAGCAGCACACGATATTTAAA---------CACTC
GTTGAAAGAGAGGCAGCCATACTCGACAGATTTTTGC-----CTTCTTTTTTGTTAGGCAGCATCAAATAAGCCGAATTC
TCAGTATGCGGCTTCTGACTAAAACATA----------------------------------------------------
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>SNPs
----------------------------------------------------S---------------------------
--------------------S------------------------------------S-S--------------------
--------------------------------S--------------------S----S---------------------
------SS--------------------------------S---------------------------S-----S-----
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-----------------------------------------------------------------------S-------S
------------------S------------------------S----S-------------------------------
---------------------------------------------------------------------------S----
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---S----------------------------------------------------------------------------
----------------------------------S----------------------S----------------------
---------S-SSS---S--------------------------------------------------------------
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-------------------------------S------------------------------------------------
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-S-----------------------------------------------S------------------------------
----------------------------------------------------------------S---------------
----S-----------------------------------------------------S-----S---------------
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-----------------------------------S--------------------------------------------
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------------------S-------------------------------------------------------------
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-------------------------------------SSSSS--------------------------------------
----------------------------S------------------------S--------------------------
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-------------S------------------------------------------------------------------
----------------------------------------S-----------------------------------S---
-----------------------S--------------------------------------------------------
------------------------S-------------
>forward_281
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---------------------CTCGCTTCTTCCCTTTCCCA---------------------------------------
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>reverse_1410
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-------------------------------------------------ACTCGAGGCGTTGTGCAAAT-----------
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>forward_1362
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-------------------------------------------------------------CTAACACTCCGCCACGTTT
AC------------------------------------------------------------------------------
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>reverse_3161
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----------------------------------------GGGGAAATCTGAACCTAAAATCTCG---------------
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