>input_sequence_79356
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATGGAGTACAAGGGGCAGCTTCAGCTGGAGAAGAAGGGTTCCCAGGAAGAAGAAGCCATG
GCGATGGCGGCCTCGTCCCCTTCCTTCTTCCTATGGCACCCCTTGTCTCTACTGCATCACGTCACCCGCAGCTGCGCAGG
CTACCTGGGCCTCTCTCGCCTCTGCCACGCCCTCAAGGATCTGAAGCCTCGCGCCGCTACTTCACCTCCCGCAGCTACCT
CTTCCCAGCTGCATGATGCAGAGGCCGGAGCAGGAGGCGCTGGACACGCTGCACATGTAAGTAGAAC--------ATGAT
CTATCTTGATCTTGTTAGCTCTGTTAGAGTTCATGCAGTGGACTGACTTC------AATCTCCTTGCGGTCC---ATGTC
TATGATCGGTCAGGATGATCGCGCGGCCGTCGAAGTGCGCTCGAGAGGGGTGCCCCAGAGGCCTCGTGGTCCAAGAGAAG
GACGAGGAGGAACACATCATTAG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>chr4D_1_TraesCS4D01G082400
CAGGACTCCAGGAGCACATACACTATACTCCCGAGCTCGACTAAGAGTTGCAG-TTACACGACTCCTGCTCTATGACTGA
TTGATTAGC----CTGTAGCTAATCAATCATTAGCTGGTGAGCGAGCTCAGCGCGCGCGCT-TTTATTTAGTTTGCTGCA
GCGTTGGCTGTCAACACGCCGGGGCAGGTGCCGCTACCTTGATGTCCATGCAAGTGTGAGGTAGTGAACCAAGCAGCACA
TGG-AAGATCGAGAAGATACTTCTCGATCGATCGATACCTTCGTGGGAAGTGGGAACACACTTCGATCGCCACATGGATT
AGGTTGCC----AGAGGAATCCCTTCGTTTCCACCGGCACATCCGCACATGCATGCCTGACGAGTGTCAAATCCGATTAG
CATATGCTCCTAGTTTCAGATCAGGTGGCTGAAACTTGTGAGATTGG----AAGATTGGATACCCCTTCGTACTCAGGTT
CAGAGAAGTTACAGATCTGTACTGAAGGCAAAAAGGCTTCTTGCTGTGATATATTGGCCGTGTGCGTCAGTTGATGCAGA
GGCCACGCACATCCTTTTTTTTTAACAGAAGAA-AACTTACTGTCATATGGGAATTTTCGACAGTGAAAACTCAGAAATC
AATGGTTCCTCTCTCCACTAATCTACTTTCAGCTGGTAGTAAATACTCCTACATTAAGGCCAATGGTCGCACACGTCTGA
AGAAACAAAACAGCACGTTTATCTATCTT--------------------------------CAGGTACAAACAGAGTTGC
ATGCACAGACACGGAAAGAAAGGGGTAAAAGTAC---CACGGGCATCTCCAATAATCGATGATGAGTCACTCTCGAGGTA
CTCAAAGGACAGTCCTGGCAACTG-ATCAATAAATACATGGAGCT--------GCCATTGCTATCTGCAACTGCCACGCA
CAACAGTTTAGATCAAAAGCTAGTAGCTAGCTAGGGAAATATATACAGCTCTCTACTCCTTCTCTGCCTCTGTGTTCGTC
TCTGAACTCCAGCCTCTGCTATGGAGTACAAGGGGCAGCTTCAGCTGGAGAAGAAGGGTTCCCAGGAAGAAGAAGCCATG
GCGATGGCGGCCTCGTCCCCTTCCTTCTTCCTATGGCACCCCTTGTCTCTACTGCATCACGTCACCCGCAGCTGCGCAGG
CTACCTGGGCCTCTCTCGCCTCTGCCACGCCCTCAAGGATCTGAAGCCTCGCGCCGCTACTTCACCTCCCGCAGCTACCT
CTTCCCAGCTGCATGATGCAGAGGCCGGAGCAGGAGGCGCTGGACACGCTGCACATGTAAGTAGAAC--------ATGAT
CTATCTTGATCTTGTTAGCTCTGTTAGAGTTCATGCAGTGGACTGACTTC------AATCTCCTTGCGGTCC---ATGTC
TATGATCGGTCAGGATGATCGCGCGGCCGTCGAAGTGCGCTCGAGAGGGGTGCCCCAGAGGCCTCGTGGTCCAAGAGAAG
GACGAGGAGGAACACATCATTAGTCTTAGCTTGGCCTGCGAACTGTAGACTATAACAT---TGAAACGGTCATGGGGAAT
TCGCTGCGTGTGTTCTTTCTGGAACCCTGAGTTCAGAGTCTTAGAGT--------GAGTGCTTCCATCTCTTCC-TGTTC
TGTTAGCAATACAAGTTTAAATTCCAGGTCGGGCATGTTGCTTGTGTTCCGCACTTCAGCTTACAATGCTAATTTCGCAC
ACCTGGGTGGAAACAAGGAATCATTCCTGTTTGTATTTGCCAAGAATACTCACATCTTACTTGTGAGCTTGGGAC--TAT
TACACTAGGCTTCTACGGAGTAAAGAGTATGCTAATCTGTATAGAGGACACTCTGTCCGATTGTTTCCTGCATTGTTATT
TCCTCCTTTCCATTTCCATTTATCTGTTTTTGTTTCGGCGTGGTTGGGCATGCGGTTGTGCAG-------ACACGAGTTT
AAATTCTAGAATTGACAAGTGATGTATAAGGGGGTTTTCTCCTATTTATTGAGCATCAAGCTTGGTGTGGGGCGGGACCA
CTCATGAAGAAATATCTTGATACTCATTTAAAAAAATTCTGAGAACCATATTTATCTGA-TACTCATACTAAAATGGTCG
TATGCATCCCTAGTTGGTGCAAAGAGGGGAAGTGAAAATCTCTCCCATTTTTATGAGAGTACATTGGAAGAGAAGGGATT
GACCCCCGTGTCGCCTACCCCGCGGGTGACCCAGGCGCAACCCTAGCCACCAGGTGAACTCCCTCCTCGCCAGATCTCCC
TCCCCTCGCCGCTGCCGGGCAAAGCCCGCGCAGCGTCGGCGGTGGCATGGAACTCCGGTTCTCCCTCTCGCGGGGCTCTG
GTGTTGCCGTT--------GTGGGAGCGCGTGGTCGTCGTGGCAAGCTTGCGCCGGGGCGGCGCAGCGAGCGCGCGGACG
GAAGCATGGTGGGCTCTGGCTCTCATGGTGCCGCAGCGGCTGGCAGATCGGATCTCGGGGCGACGGCCTCAATAGTTGGC
GGGGGTGCAGTCT
>chr4A_1
CATGACTCCAGGAGCATATACG--ATACTCCCGAGTTCGACTAAGAGTTGCAGCTTACACGACTCCTGCTCTATAACTGA
TTGATTAGCTAGCCTGTAGCTAATTAATCATTAGCTGGTGAGCGAGCTCAGCGCGCGCGCT-TAGTTTATTT-------A
GTGTTGGCTGTCAACACGCCGGAGCAGGTGCCGCTACCTCGATGTCCATGCATGTGTGAGGGAGTGAACCAAGCAGCACA
TGGAAAGATCGAGCAGATACTTCTCGATCAATCGGTACCTTCGC-------GGGAACACACTTCGATCGCCACATGGATT
AGTTTGCTAGATAGAGGAACCACTTTGTTTCCACCGGCACATCCGCACATGCACGCCTGACGAGTGTCAAATCCGATTAG
CATCCGCTCCTAGTTTCAGATCAGGTGCCTGAAACTTGTGAGATAGG----AAGATTGGATACTCCTTTGTACTCAGGTT
CAGAGAAGTTACAGATCTGTACTGAAGGCAAAAAGGCTTCTTGCTGTGATATATTGGCTGTGTGCATCAGTTGATGCAGA
GGCCACGCACATCCTTTTTTCAAACAGA---AAGAACTTACTGCCATATGGGAATTTTCGACACTGAAAACTGAGAAATC
AATGGTTCCTCTCTCCACTAATCTACTTTCAGCTGGTAGTAAATACTCCTACATTAAGGCCAATGGTACCATACGTCTGA
AGAAACAAAACAGCACGTTTATCT----T--------------------------------CAGGTACAAACAGAGTTGC
ATGCATAGACACGGAAAGAAAGGGGTAAAAGTACTACCACGTGCATCTCCAATGATCGATGACGAGTCACTCTCGAGGTA
CTCAAGGGACAGTCCTCGCAACTGCATCAATAAATACATGGAGCT--------GCCATTGCTATCTGCAACT--------
------------------------------------------------------------TCTCTGCCTGTGTCTTGGTC
TCTGAACTCCAGCCTCTGCTATGGAGTACAAGGGGCAGCTTCAGCTGGAGAAGAAGAGTTCCCAGGAAGAAGATGCCATG
GCGATGGCGGCATCGTCCCCTTCCTTCTTCCTATGGCACCCCTTGTCTCTACTGCATCACGTCACCCGCAGCTGCGCAGG
CTACTTGGGCCTCTCCCGCCTCTGCCACGCCCTCAAGGATCTGAAGCCTCGCGCCGCTACGTCACCTCCCGCAGCTACCT
CTCCCCAGCTGCATGATGAAGAGCCCGGAGTGGGAGGCGCTGGACACGCTGCAGATGTAAGTACGTCATGATCAGATGAT
CTACCTTG---TTATTTGCTCTGTTCGAGTTCATGTGGTGGACTGACTTCTGATTCAATCTCGTTGCAATCTAATATGTC
TATGATCGGTCAGGACGATTGCGCGGCCGTGGAAGTGCGCTCGAGAGGGGTGCCCCAGAGGCCTCGTGCTCCAAGAGAAG
GACGAGGAGGAACACACCATTAGGCTTAGCTTAGCCTGCGAACTGTAGACTATAAC------------------------
------CGTGTGTTCTTTCTGGAACTCTGAGTTCAGAGTCTTAGAGT--------GAGTGCATCCATCTCTTCCCTGTTA
TGTTAGCAATACAAGTTTAAATTCCAGGCCGGGCATGTTGTTTGTGTTCCGCACTTCAGCTTACAATGCTAATTTCACAC
ACCTGGGTGGAAGCAAGGAGTTGTTTCTGTTTGTATTTGCCAAGAATACTCACATCTTACTTGTGAGCTTGGTACTGTAT
TACACTAGGCTTCTATGGAGTAAAGAGTATGCTAATCCGTATAGAGGACACTTTGTCTTATTGTTTCCTCCAGTGTTATT
TCCTCCTTTCCACTACCATTTATCAGTTTTCGGTTCGGCGTGGTTGGGCATGCGATTGTGCAGCCGAATGACCCGAATTC
AATTTCTAAAATTGACAGATGATGTAT-AGGGAGTTTTCTTCTGTTTATTGAGGATCAAGCTTGGTGTGGGGCGAGACCA
CTCATGAAGAAATATCTTCATACTCATTTAAAAAAATTCTGAGAACCATGTTCATCTTAGTACTCATACTAAAATGGTCG
TATGCATCCCTAGTTGATGCAGAGTCGAGAAGTGAAAATGTCTCCCATTTT-ATGAGAGTACGTTGGAAGAGAGGGGATT
GACCCTCGTGTCGCCTACCCCGCGTGCGACTCGAGCGGAATCCTAGCCATCAGGCGAACTCCCTCCTCGCCAGATCTCCC
TCCCCTCGCCGCCACCGGGCAAAGCCTGCACGGTGTCGGCGGTGGCGGGGAACTCCGGTTCTCCCTCTCACGGGGCTCGG
GAGTTGCGGAGCGTCTGCCGTGGGAGCACGTGGTCGCCGTGGCAAGCTTGCATC-GGGTGGGGCGGCGAGCGCG------
--------------------------------------------------------------------------------
-------------
>chr4B_101
--------------------------------------------------------------------------------
-------------------------AATCATTAGCTGGTGAGGTAGCTCAGCGCGCGCTTAATTTATTTAGTTTGCTGCA
GTATTGGCTGTCAACACGCCGGAGCAGGTGCTGCTACCTCGATGTCCATGCATGTGTGAGGTAGTGAACCAAGCAGCACA
TGG-AAGATCGAGCAGATACTTCTCGATCGATCGATACCTTCG-------TGGGAACACACTTCGATCGCCACATGGATT
AGGTTGCTAGA----GGAATCACTTTGTTTCCACCGGCACATCCGCACATGCATGCCTGACGAGTGTCAAATCCGACGT-
-------TCCTAGTTTCAGACCAGGTGCCTGAAACTTGTGAGATAAAGTACAAGATTGGATACCCCTTTGTAGTCAGGTG
CAGAGAAGTTGCAGATCTGTACTGAAGGCAAAAAGGCTTCTCGCTGTGATATATTGGCTGTGTGCATCAGTTGATGCAGA
GGCCTGGCACATCTTTTTTTCAAACAAA---AA-AACTTACTGCCATATGGGAATTTTCGACACTGAAAACTCAGAAATC
AATGGTTCCTCTCTCCGCTATTCTACTTTCAGCTGGTAGTAAATACTCCTATATTATGGCCAATGGTAGCATACGTCTGA
AGAAACAAAACAGCACGTTTATCT----TTCAGACGTTCGCCATCAGATCTACTGAATATTCAGGTACAAACAGAGTTGC
ATGCATAGACACGGAAAGAAAGGGGTAAAAGTACTACCACCTGCATCTCCAATAATCGATGACGAGTCACTCTCGAGGTA
CTCAAAGGACAGTCCTCGCAACTGCATCAATAAATACATGGAGCTCAGGAGCTGCCATTGCTATCTGCAACTGCCACGCA
CAACAGTT-AGATCAAAAGCTAGTAGCTAGCTAGGGAAATATATACAGCT-----CTCCTTCTCTGCCTCTGTCTTCGTC
TCTGAACTCCAGCCTCTGCTATGGAGTACAAGGAGCAGCTTCAGCTGGAGAAGAAGAGTTCCCAGGAAGAAGAAGCCATG
GCGATGGCGGCCTCGTCTCCTTCCTTCTTCCTATGGCACCCCTTGTCTCTACTGCATCACGTCACCCGCAGCTGCGCAGG
CTACCTGGGCCTCTCTCGGCTCTGCCACGCCCTCAAGGATCTGAAGCCTCGCGCCGCTACTTCGCCTCCCACAGCTACCT
CTCCCCAGCTGCATGATGAAGAGGCCGGAGTAGGAGGCGCTGGACACGCTGCAGATGTAAGTACGGC--------ATGAT
CTACCTTG---TTATTTGCTCTGTTGGAGTTCATGTGGTGGACTGACTTCTGATTCAATCTCGTTGCGATCTAATATGTC
TATGATCGGTCAGGATGATTGCGCGACCGTCGAAGTGCGCTCGAGAGGGGTGCCTCAGAGGCCTCGTGCTCCAAGAGAAG
GACGAGGAGGAACACACCATTAGGCTTAGCTTAGCCTGCGAACTGTAGACTATAACATTGATGAAACGGCCATGGGAAAT
TCGCTGAGTGTGTTCTTTCTGGAACTCTGAGTTCAGAGTCTTAGAGTGACTGAGTGAGTGCTTCCATCTCTTCA-TGTTC
TGGTAGCAATACAAGTTTAAATTTCAAGCCGGACACATTGTTTGTGTTACGCACCTCAGCTTACAATGCTAATTTCACAC
ACCTGAGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>SNPs
--S-------------S----SSS-----------S--------------------------------------S-----
------------------------S-------------------------------------------------------
-S--------------------S----------------S------------S---------------------------
-------------S-----------------------------SSSSSSS------------------------------
-------S-------------S---S------------------------------------------------------
---SS----------------------S----------------S-----------------------S-----------
----------------------------------------------------------S------S--------------
--------------------SSS-SS-SSSS------------S-------------------S----------------
-------------------------------------------------------------------S---S--------
------------------------SSSS----------------------------------------------------
-----S-----------------------------------S--------------------S-----------------
----------------S---------------------------------------------------------------
--------S-----------------------------------------SSSSS------------------S------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S---------------S-----------S----------------------S---------SSS--------------
---S----SSS--S--S--------S---------SS-------------------------S-----S--S--------
-------------------S------------------------------------------------S-----------
----------------S------S--------S------------------------------------S------S---
-------------------------S------------------------------------------------------
----------------------------S-----------S-----------------------------------S---
------------S------S-SS--S----------------------------------------------S-------
---------------S---------------------S--------------S----SS----------S--S-------
------------S-S---------S-----S-S---------------------S-----------------S---S--S
--S-----S--------SS--------S----S-------S--S---------S--------------------S-----
------------------S------------------------------S--S----S----------------------
----------------S----S--SS-S-----------S-----------S----------S----------S------
-----S------------------S-S---S-SS---S--S--------S----S-------------------------
------------SS------------S--S-S-S------------SS---------------------S--------S-
-S-----S-SS----------------S--------S--------------SS-S---S--S--S---------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_328
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GCCACATGGATT
AGGTTGCC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>reverse_1597
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------GAAT
TCGCTGCGTGTGTTCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
