>input_sequence_79352
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---------------------------------ATGAACCCTGATAGGAAAACAACACTTGAATTGTCAGTGCGTGCTTA
TGCAGAGACGAGGCATGGGCCTGTTGTCAATCCAGAAACCGGGACCGCTTTTGACTCGTTGGACGAAGCTTATGAGTTCT
ACAATCTATATTCGTGGGAATGTGGTTTCGTTGTCAGGCTTGCAAAAAGCAGAATGAATGTTCGTCGGAAGAGATGCATG
CAAGAAATACTGTGCGCTTGTGCGGTACGTGATGACAACCC-------CGATAATCAGTGATACCGTTGGCATTTTCCTC
TCCTGTAAAACGTGCACTGTTGCTTTTGTTGATGTAACGCACTATATGGTCTGAAAAAATGCCTAGCTAATTTTTTATAT
TTGTGCTTCCTTTTTTTTGCAGGACAAACCAATGAGGAAGAACAGTCGGTCTTCAAGGTGTGGGTGTGAAGCCATGATCA
GACTGCTCCGTCCAAACTTCACTTGA------------------------------------------------------
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>chr2B_1_TraesCS2B01G374100
GGGGCGTCGACGGAGCTGCGGTGTGGACCGCTCCAGTACTGCCACTGGAGTCTCAGGATTCCATGAGCGTGGTGAATGTC
GAGGGGGTCGCCGCCGGCAAGCCGCGCGCCGTGGGAGAGGCAGCCACAGATGACGTTTGCTCTGAAGCGACAAGTGGGTG
GACGCGAAGGTTAGTCAGGGAAACACCACTGCAAATCATTTTGTTTAGGAAAAAATGCACGATGAATGGGTCGCTCATGG
ACCAGTGATTAGCAGCATTGCAGCAAGTGTTGATTTTTGGCCATACTGGACCAAGACATTTTGATG-GGTGGTTAGTTGT
CCTTCATTGGATTTTTAGGGAATCTGCCTGATGGATGG-TTTACTAGTGAGATGTTATTAGGAGCAAGTAGTATTTCTTT
TAGCAAATGGGTATTTTGGAGAGATTCGACATGTTTGATGACTAATTAGGCACATGTGGGGGGAAAGGGGTGCAAGCACA
GGTGGGATTGGTTTGTTTTGGCTGTTGTCTTGATGGCAAATTATGTCGATTTTTTGGTGTACACATGCTTG---------
---TTATTGTAGCATGGGGGGCGGATAACGCTGTGGGAGACATAATCTGTTT----------------------------
---------------------------------------------------------------------GATTCCCTTGT
TTGATGCACTCCCGATAGCAATATAGATT-AAGAGTTTGGGTTTATATGAGATGGTTAT-TGGATCAGTCGTGTGTC--G
GCTTGGATTTTAGTTTAAATGTTTCAGCGGGAG-----------------------------------TATTGTTATGGA
GATGGATGCACAGCATAAATGTTCTGACGTGGGTAAATATATAGGTGAATCCTGGAGTTGGAATTAGACGCTTCATTTTA
GCTGTGTTCCTGAGGATTTTCATAGTGCGCATCCATGGCTGTACCAAAATGCACTCACTTGGGCTGTAGTACATATCTTT
TTATGTTCATCTA-AGTTGTTTCCGGGATAGCTGAGCATTTTCCTCCGTCA-TTTTTTTGCCAAATACTTCTTCTTCAGG
GTTAGGAT-TGGAAGGCGCCCGAGGAGAGGGAAATGAACCCTGATAGGAAAACAACACTTGAATTGTCAGTGCGTGCTTA
TGCAGAGACGAGGCATGGGCCTGTTGTCAATCCAGAAACCGGGACCGCTTTTGACTCGTTGGACGAAGCTTATGAGTTCT
ACAATCTATATTCGTGGGAATGTGGTTTCGTTGTCAGGCTTGCAAAAAGCAGAATGAATGTTCGTCGGAAGAGATGCATG
CAAGAAATACTGTGCGCTTGTGCGGTACGTGATGACAACCC-------CGATAATCAGTGATACCGTTGGCATTTTCCTC
TCCTGTAAAACGTGCACTGTTGCTTTTGTTGATGTAACGCACTATATGGTCTGAAAAAATGCCTAGCTAATTTTTTATAT
TTGTGCTTCCTTTTTTTTGCAGGACAAACCAATGAGGAAGAACAGTCGGTCTTCAAGGTGTGGGTGTGAAGCCATGATCA
GACTGCTCCGTCCAAACTTCACTTGAATTGTCCGTGCGTGCTTATGCACAGAAAAGTCATGGTCCTGTTGTCAATCCAGC
AATTGGTACAACTTTTGACTCATTGGACGAAGCTTATGAGTTCTACTATCTCTATTCTTGGGAATGTAGTTTTGGAATTA
GGCGGGCAAAAAGCAGACTGAATGTACCCGCGTTATGTACCCGCAATCTGTTGGTGCCTTTTTTTGGGTTGCTGTAACGG
AGAAGACAATTTGAAATATGGGTACCTGACATTATTTTTTGTTATGTTTTTGCAGGGCAAACCAATGAGGGAAAACAGTC
GCTCGTCAAGGTGTGGCTGCGAAGCAATGATCAGACTGATTCATTCAGGGAGATGTCCCAGTAGTCTAATGATTTCTGTA
ACGGACTGTTTGTATCATCTATTCCTCTGGCAAAAATGTTAATGACTTGTTCCCGGACAAAACCACCCATTCTTTGTGTA
CTGTAAGTCAATGGTTCAACTAAGGTTTTGGCTTGGTCGTTCGACTAATTAATTGGTTCGTGGAGCTGGAGAGAAGTGCG
AGTGCCCATGCCTAGAGACAGCGCGCTGTTGTGAAAAGTGCAATGTCATATGCAGCGCTTCAAACTGTGCTGTGGCCATG
TGACAGCACACACAAAAAAAAAGAGAAAAACAAACTGATGTTCATCGCTGCACTTGTACCATTGCTATGTCTCGTACGTA
GTTGGTACGTGCCAGCTAAAGTGAGTCGTGTCTTTTTTAATTGTGGCTTTGTTTTTATGTTAAGTGATAAGATCACCAAC
AAAAAAATGTTAAGTGATAAGACAATCGTGTGTCAATGTTTTGCTCCCTTTTATATTTTGAAGCATGTCATGTCTTTGTG
ACTAATCGAGCATGATTATGCCAAAAGCTCATTTCTAAAATTCTGTTTTACTTTGTTTGATGCTATCCTATGGTAATGCT
TTTCAACCATGTTGTTAAAATTTCCCGCAAAAAAAACCATGTTGTTAAAATAATTGACCAAAAAAA
>chr4A_9
--------GACGGAGATGCCGTGTGGAGCTCTCAGGTAATGCCACTGGAGTCTCAGGATTCCATGAGCGCTGTGAATGTG
GAGGCGGTCGCCGCCGGCGAGCCACAGGCCATGGGAAAGGGGGCCACATATGACGTTTGCTCCGAAGCGACCAGCGGGTG
GACGCGAAGGTTAGTCAGGGGGCACCATTTGCATAACAATATTTTCCTCGTCTATTTGGCTATTGTTTATCACGAACATT
GATT-----------------------------TGTTTTGCCAGACTATGACTATATTGCTTGATCCGGCGGTTAGTATG
CCTTCCTTGGATTGTTGTGCAGTATAGATGACGGTTGGTTTTTGTTGTGAGATATTGATATGAGAAAGTAACATGTA---
---------------------------------TTTGGTGTCTAATTAGGGACATGTGGTGGAAAACTTGTGCAAGCTTA
AGTTGGATCTGTTTTGTTTGGGGAATTGACTTCGACAGCTACACAAGTTCATTGGGTTGTAGATGCGTTAGTCAATTACC
GATTTATTGTGGCATTATAATGCGTTGGTTTCGTTTGTCAAGTTGGAACTGTTATCTCTAGTCTTTTGTTTTTCACACCG
AAGGAAGTGGTTATGGTCGTAGATGCATTAGTCAATTACTGATTTATTTGTGCCATTTTTAATGAGCTGGATTCGTTTGT
TTGACGCAATGATGATAGCATTATAGCTAAAAGAGTTTCAATTTATAGGAGTTGGGTCGCTGCATGAGCCGTGTGATCTG
TTTTGGATTTTTGTTTCGCTGTTCGTGTGGGATAAAAATGTATCCATGGCATATGTATGTGGTCTTTTTATGATTTTGGA
GGTGAATGAGATTCTTAGAATACTGGGATCTGTAATATGTAGT--------------TTGGATTTATATGATTTGTTTGA
GCTAACTTTCTAGGTTTGTTACATGGATGGATGTAGCGATTATGCCTGACGTTC-------------------------T
TTATGTTGAAATA-TTTTGTTTCAATGGTAATTGAGCATTTTCATCCATGTTTTTTTTCCACAAAAACACTATCTGCGGG
GTTAGGATTGGGAAGGCACCTGAGGAGAGGGAGATGAACGCTGATAGGAAAACAACACTTGAATTGTCAGTTCGTGCTTA
TGCAGAGACAAAATCTGGGCCAGTCGTCAATCCAACAATTGGCACATCTTTTGACTTGTTGGATGAAGCCTATGAGTTCT
ACAACCTCTATTCATGGGAATATGGTTTCGGTGTGAGGCTTGCGAAAAGCAGACTGAATGTTAACCGGAAGAGATGTATG
CAAGAAATATTGTGTGCTTGTGCGGT------ATGTGCACTAATATGTCGATAATCAATATTTAATTAGTTATTTTTTTC
TTCTATAATGTGATCTGTTA---TTTGGTTGCAGTAATGCACTAGATAACCTTGGGTAATCTGTAGCTAACATTTATTCT
GTACTTGCTACCGTGTCTGCAGGGAAAACCAATGAGGGAAAATAGTTGATCATCAAGGTGCGGGTGTGAAGCCATGATTA
GATTGCTCTGTTCAAA----------------------------------------------------------------
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>chr6B_890
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-------------------------------------------------------------------------------T
TTATGTTGATATATTTTTGTTTCAAGGGTAATTGAGCATTTTCATCCATGT-GTTTTTCCACAAAAACACTGTCTGCAGG
GTTAGGATTTGGAAGGCACCTGAGGAGAGGGAGATGAACCCTGATAGGAAAACAACACTTGAATTGTCAGTTCGCGCTTA
TGCAGAGACAAAATCTGGGCCAGTCATCAATCCAACAATTGGCACATCTTTTGACTCATTGGACGAAGCCTATGAGTTCT
ACAACCTCTATTCATGGGAATATGGTTTCGGCGTGAGGCTTGCGAAAAGCAGACTGAATATTAATCGGAAGAGATGTATG
CAAGAAATACTGAGTGCTTGTGCGGTACGTGCATGTGCACTCATATGTCGATAATCAATATGGCATTTGTTA-TTTTTTC
TTCTATAATATGATCTGTTA---TTTTGTTGCAGTATTGCGCTAGATAACCTTGGGTAATCTCTAGCTAACATTTTTTCT
GTACTTCCTACCGTGTCTGCAGGGCAAACCAATGAGGGAAAACAGTCGATCATCAAGGTGCGGGTGTGAAGCCATGATTA
GATTGCTCCGTTCAAA----------------------------------------------------------------
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>SNPs
SSSSSSSS-------S---S-------S-S---SS---S------------------------------SS--------S
----S-------------S----S-SS---S-----S---SS------S-------------S--------S--S-----
--------------------SSSSS-SSS----S-S--S-S-S--SSSSSSSS-S-SSS-S--SSS-SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S---S----S---SSSS-S-S-SSSS-----S---S-------SSS
-----S-------S--SS-S-S-S-SSS---S--S-------SS-S-------S--SS--S---S-----SS--S-SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--S---------S--------S--S---SSS--------SS-
S--S----SS----SS-----SSSS-SSSS-SSSSSSSSSSS-SSSSSSSS--SS-S----S-SSS-S-S----------
----------S----SSSSSSSS-S-SSSSSS--SS-SS-SS-SSSSSS-S-----------------------------
--------------------------------------------------------------------------SS----
----S---S-SSS-------S-----S-S---------SSS------S---S---S-SS---S--S--S------SS---
SS---------S----SSS----SSS-S----S--------------------------------------SS--S----
-S--S---SSSSS-S--S-SSSSSS-SSSSS-SS-S--S--SSSSSSSSSSSSSSSS-----S---S-S-S--SS---S-
---SSS--S--SS-SS-S--SSSS-SSS-S--SS-SS-S-SSSS-SSS-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSS-
-------S--S---SS-------SS--S--SS-----------S---S-SS-------SSS----S--SSSS---S----
-----------------S--S-----------S--------------------------------------S--------
---------S-SSSS------S--S---------SS--SS--S--SS----------------------S----------
----S--S-----S-------S--------S---S--------S---------S--------SS------------S---
--------------S----------------SSSSSSSS-S----------------S-SS-S-SS---SS-----SS--
-S--S---S-S-SS-SS-SSSSS--------SS----S------S--SSS--SSSSS---SS--------SS----S-S-
S-SSSSSSSSSSS-S-S------S-------------S-S--------S--S--------S-----------------S-
--S--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1029
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-------------------------------------------------TGCACTCACTTGGGCTGTAG-----------
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>reverse_1935
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--------------GGCTGCGAAGCAATGATCAG----------------------------------------------
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