>input_sequence_79344
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-----------------------------------------------------------------------CCATATATA
CGCGCGCGCGCCGCC---CCTCGT-GG--CACCCAGCGAGAAAAACCAACCATCGT------------CTTTGGAAGCCC
GGCGCACGCAGAGCTCTAGCGAACGAACT---CGGCGAGGGATGGCGGCGATGGCGGGGGAGGAGCAGACGGTGCTGGTG
CGGTGCGCGGACCTGGCCAAGTTCAAGGTGCCGGCGTCGGTGGCGCGGCGGGCGGGGAGCGTCGCGGCGGCGCTGGAGGC
GGGGCAGAGCGTGGTGGAGCTGCCGCGGGGGGTCTCCGGCAAGGGCCTCGCCACGGCGGTCGCGTACTACCAGGCCCGCG
CGGAGGCGGAGGCGCGCGGCGCGGACGGTGGCGAGTTCGACGGCGAGTTCGTCCGCGGGCTGACGCACGACGCCGCCATC
GACCTCATCTACGCCGCGCACCACCTCGGCGACGAGGCGCTCTTCAACCTCTTTGCAGGCTACAGGGCTTATTAGTTCA-
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>chr5A_1_TraesCS5A01G195200
GCCCGGCGCGCATGTCCGGCGACGCCGGGATGTTGGCCTCGAAAAGCAGCCACACCCCCCACTCCTGGAGCGAGCGGCGG
CCGAAGCCGTTGGCCGCCGCGGCGTCGCCGGGGAAGCGTTCGACCATCGCTGGAGAGGGAAGG---CAAGGGGAGGACAG
GGG-----------------------------------------AGATAGCAGAGCTCGGCGGCGCGGG--CGGGAGAGA
GCAGAGG-CTCGGCGGCGGCTGA-TTTG---------------GGCTCGGGCTGATGTGGCCAA---CGACGAGGAGCGG
CGGGT-TTTA-TAG-CCCGCG-----TCATGTGTACGCGTG-GCGGGAGGGAAGGTGTCG---------C------CGCG
CCGCCC-GTAA---------------GAAATCAATGGTAAGGCTGACCGGCGGCAACCTTGCCATTGATTCCCCACGGGA
AACCGAGGCGC--TCTGGGGGAAGACGAGGT---------GTCATCTCGTTGACGCGGCTGGCCCGCGGCTCTTTCGCAT
GAAAA----------TCACTCGCCCCGGCGC---------CC--------CCC-AGCA----------CGTCGGGTTCGG
CCT-GAGTACGCCGACGTCAATTTCGGCCCAAGCCGATGAAAAACAAGCTTCTGAGG-CATGACTGGGCCGATTTTTAGG
CGTTGGCAC-TGAAAAA-CGTCTGGAGAGGGTCGTGTGTTGGGGGCGCGGCTGGAGATGCTATAAGGAAGACGATGCTGA
GTAGGCAGGGAATGAAAGGGCATCATTTCTTTTCTGG-AAAAAAATATTTTTTTCCTTCC--AAAAGAGAGAGAATGTAA
CCTTTTCTTTTTGAGAAAGGACGCAACTTTTTCTTGAAGCAATGGAAAATCCAAAATGGCCGGGCAAAAACGGCAT--GC
ACGTTTAAAGCATCATCGATACGGACG-GGG-ACACCCTAGGCGAAACAGACGGGCTGCAAAAGAAAGAAATCG------
------------TCTCAGAGCTGCCGCTTTTC------------------------------------------------
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---------------------------------------CGATCACGCCACGAAACGGAGCCTAACCTTTACAACACCTT
GATCCGAACACATGACACGTACGTCCTCTTCCCACCAACCGAGTCGGGCTCGATCCGTGTGGCCGGCGCACCCATATATA
CGCGCGCGCGCCGCC---CCTCGT-GG--CACCCAGCGAGAAAAACCAACCATCGT------------CTTTGGAAGCCC
GGCGCACGCAGAGCTCTAGCGAACGAACT---CGGCGAGGGATGGCGGCGATGGCGGGGGAGGAGCAGACGGTGCTGGTG
CGGTGCGCGGACCTGGCCAAGTTCAAGGTGCCGGCGTCGGTGGCGCGGCGGGCGGGGAGCGTCGCGGCGGCGCTGGAGGC
GGGGCAGAGCGTGGTGGAGCTGCCGCGGGGGGTCTCCGGCAAGGGCCTCGCCACGGCGGTCGCGTACTACCAGGCCCGCG
CGGAGGCGGAGGCGCGCGGCGCGGACGGTGGCGAGTTCGACGGCGAGTTCGTCCGCGGGCTGACGCACGACGCCGCCATC
GACCTCATCTACGCCGCGCACCACCTCGGCGACGAGGCGCTCTTCAACCTCTTTGCAGGCTACAGGGCTTATTAGTTCAT
TATAAGCAGTTGGTTCTATAAGAGGCGCAGTGAAGCTTTTTGCTTGATTAGTTTGTGTGTTGACCGAGTGAAATTTTCTT
TTTT---CTCCTTGTACCGACGATG---CTATCTTGTGATTATAATTATGCCATATACTCCTCCGTAAACTGTATTGATT
TCCTCCTGTGATGAACTAGTAGTTTGCATTGTCTTGATTTCGATCCACTGATCCACGCCGTCTCGCTTTGTCTGAGACTC
CATCACAACGGAAAGAAGGTTAAAAAACACACCATGGAGCACCAAAAACAGGACCAATGGAGACGAAGCCAAGGTCGCGG
ACAAAAATACTACT--------CTAGCAGCGACAAGCACGAAGCGCATGCAGACGGGACAAAAATGGAAGCGAGGCGCGC
GATGCACAAGAAACCCAAACGAAGAG---GCATCGGCCACAACG-----------------------AGGAATTGCTTTG
AACACAAAGTAC--AAGGAAAGAACAAAGACAGTTCCGCAGTACAATCGCCCAAGATTTTCCTTTTCTTTTGAAAGGCAA
TCG--------ACCAAAAATTACGGATACATGAAGGGCGTGAGCGTGTTAGCGCCGGGCTACATGAGGTCTGTGGGAGTG
CGCGGTGGGACGAAAAATCCCGGATGCATCAGTGTACCAACTCCCCTTTAGAGCATCTATACATCCGGGTGGCCCAAACC
CGTCTAAAACATTCGGACGGTCCATCCTGTCATTGACCTGTCACGGAATTTCGACTTAGACAGGCTTCTTAAATATGCCT
CAAATGCTCAAATACGGAACGGGTTTGGAAGGGGCGCGCCCGCCACGTCGGACCCGACAGCCCGACCCCATCGGAAATTG
CATCAAATCTATCAAACCCTTCCTCCTCCTCCCTCCCCCTCCAACCTTTCCCGCGCTCGAGCACTCGCCGTCTGCCACCC
TTGCTCCCCATCCTCATCACAGGTCTCGATCCATCGCCGTAGATATCGTCCAGCCCGTCCCCGACCGCCGTGACGGAGAT
GCAGTTCGC
>chr5D_1
GCCCGGCGCGCATGTCCGGCGGCGCCGGGATGTTGGCCTCGAACAGGAGCCACACCTTGCCCTCCTGGAGCGAGCGGCGG
CCGAAGCCGTTGGACGCCGCGGCGTCGCCGAGGAAGCGTTCGGCCATCGCTGGAGAGGGAAGG---GAAGGGGAGGGCGG
GGG-----------------------------------------AGATAGCAGAGCTCGGCGCGGCGGAGACGGGAGAGA
GCAGA-G-CTCGGCGGCGGTTGG-TTTG---------------GACTCGGGCTGGTCTGGCCAGCGGCGAGGGGGAGCGG
CGGGT-TTTA-TAG-CCCGCG-----CCGTGTGTACGCGTG-G-GGGAGGGGAGGCGTCG---------C------CGCG
CCGCCC-GTGA---------------GGAATCAATGGCAATGTTGACCGGCGGTAGCCTTGCCATTGATTCTCCGCGGGA
AACCGAGGCGC--TCTGGGGAAAGACGAGGC---------GTCGTCTCGCTGGCGCGGCTGGCCCGCGGCTATTTCGCGC
CAAAA----------CCGCTCGCCCCGGCG----------CC--------CCC-AGCG----------CGCCGGGTTCGG
CCT-GGGTCCGCCGGCGCCAGTTTCGGCCCAAACCAGCGAAAAA-GGGCTCCTGGATACGCGACTGGGCCGATTTTTGG-
CGCCGGCGC-GGCAAAAACACCT-GGGAGGGCC---TGTTGGGGACGCGGCTGGAGTTGCT-------------------
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>chr5D_1
GCCTGGCGCGCATGTCCGGCGGCGCCGGGATGTTGGCCTCGAACAGAAGCCACGCCTCCGGCGCCTGGAGCGAGCGGCGA
CCAAAGCCGTTGGCCGCCGCGGCATCGCCGGGGAAGCGTCCGGCCATCGCTTGAGAGGGAAGGAGGGAAGGGGAGGATGG
GGG-----------------------------------------AGAT---AGAGCTCGGTGGCGCG--GACGGGAGAGA
GCAGA-G-CTCGGCGGCGGCTGG-TTTG---------------GGCTCGGGCTAGTGTGGCCAGCGGCGAGGGGGAGCGG
CGGGTCTTTA-TAG-CCCGCG-----CCGTGTGTACGCGTG-GCGGGAGC-GAGGCGTCG---------T------CGCG
CCGCCC-GTAACGCGCCGGCCCGTGAGGAATCAATGG-AAGGCTGACCGGCGGCATCCTTGTCATTGATTCCCCGCGGGA
AACCGAGGCGC--TCTTGGGGAAGATGAGGC---------GGCGTCTCGCTGACGCGGCTGGCCCGCGGCTCTTTCGCGC
AAAAA----------CCGTTCGCCCCGGCGC---------CC--------CCC-AGCA----------CGCCGGGTTCGG
CCT-GGGTCCGCCGGCGTCAGTTTCGGCCCAAACCGGCGAAAAACGGGCTCCTGGGAACGTGACTGGAACGATTTTTGGA
CGCCGACGC-GACAAAAACGCCTGAGAAGGGCT---TGTTGGGAGCGCGGCTGAAGATGCT-------------------
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>chr3A_1
GCCCAGCGCGCATGTCCGGCGGCGCCGGGATGTTGGCCTCGAAAAGCAGCCACGCCTCCCACTCCTGGAGCGACCGACGG
CCGAAGCCGTTGGCCGCCGCGGCGTCGTCGGGGAAGCGTTCGGCCATCGCTAGAGAGGGAAAG---GAAGGGAAGAACAG
GGG-----------------------------------------AGATGGCAGAGCTCGACGACGCG--GACGGGAAAGA
GCAGA-GACTCGGCGGCGGCTGG-TTTG---------------GGCTCAGACTGGTGTGGCCAGCGGCGAGGGGGAGCGG
CGGGT-TTTA-TAG-CCCACG-----CCGTGTGTACGCGTG-GCGGGAGGGGAGGCGTCG---------C------CGCG
CCGCCC-GTGA---------------GGAATCAATGGCAAGGCTGACCGACGACAACCTTGCCATTGATTCCCCATGGGA
AACCGAGGCGC--TCTGGGGGAAGACGAGGC---------GTCGTCTCGCTGACGCGGCTGGCCTGCGGCTCTTTCGCGC
CAAAA----------CCGCTTGCCCCGGCGCCCCC--GC-CC--------CCC-AGCG----------CGCCGGGTTCGG
CCT-GGGTACGCCGGCGTCAATTTCGGTCCAAGCCGATGAAAAACAGGCTCTTAAGGGCGCGACTGGGCCGATTTTTTGG
CGCCGGTGC-GAGAAAAACGCCTGGAGAGGGCC---TGTTGGGGACGCGGCTGGAGATGCT-------------------
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>chr7D_1
GCCCGGCGCGCATGTCCGGCGGCGCCAGGATGTTGGCCTCGAACAGAAGCCACGCCTCCGACACCTGGAGCGAGCGGCGG
TCGAAGCCGTTGGCCGCCGCGGCTTCGCCGGGGAAGCGTTCGGCTATCGCAGGAGAGGGAAGG---GAAGGGGAGGACGG
GGG-----------------------------------------AGATAGCAGAGCTCGGCGGCGCG--GACGGGAGAGA
GTAGA-G-CTCGGCGACGGCTGG-TTTG---------------GGCTCGGGCTGGTGTGGCCAGCGGCGAGGGGGAGCGG
TGGGTTTTTA-TAG-CCCGCG-----CCGTGTGTACGCGTG-GTGGGAGGGGAGGCGTCG---------C------CTCG
CCGCCC-GTGACGGGCCGGCCCGTGAGGAATCAATGG-AAGGCTGACCGGCAGCAGCCTTGCCATTGATTCCCCGCGGGA
AACTGAGGCGC--TCTGGGGGAAGACGAGGC---------GTCGTCTCGCTGACGCGGCTGGCCCGCGGCTCTTTCGCGC
CAAAA----------CCGTTCGCCCGGGCG----------CC--------CCC-AGCA----------CGCTGGGTTCGG
CTT-GGGTCCGCCGGCGCCAGTTTCGGCCCAAACCGGCGAAAAACGGGCTCCTGGGGGCGCGACTGGGCCGATTTTTGGG
CGCCGGCGC-GGCAAAAACGCCTGAGGAGGGCC---TGTTGGAGGCGCGGCTGGAG------------------------
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>chr6D_1
GCCCGGCGCGCTTGTCCGTTGGCGCCGGGATGTTGGCCTTGAACAGAAGCCACGCCTCCGACGACTGGAGCGAGCGGCGG
CCGAAGCCGTTGGCCGCCGCGGCGTTGCCGGGGAAGCGTTCAGCCATCGCTGGAGAGGGAAGGAGGGAATGGGAGGACGG
GGG-----------------------------------------AGAT---AGCGCTCGGCGGCGCG--GACAAGAGAGA
GTAGA-G-CTCGGCGGCGGCTGG-TTTG---------------GGCTCAGGCTGGTGTGGCCAACGGCGAGGGGGAGCGG
CGGGG-TTTTGTAT-CCCTCG-----CCGTGTGTACGCGTG-GCGGGAGGGGAGGCGTCG---------C------CGCG
CCGCCC-GTGACCCACCGGCCCGTGAGGAATCAATGG-AAGGCTGACCGGCGGCAGCCTTGCCATTGATTCCCCGCGGAA
AACCGAGGTGC--TCTGGGGGAAGACGAGGC---------GTCGCCTCGCTGACGCGGCTGGCCCGCGGCTCTTTCGCGC
CAAAA----------CCGTTCGCCCCGGT--------GC-CC--------CCC-AGCG----------CGCCGGGTTCGG
CCT-GGGTCCGTCGGCGTCAGTTTCGACCCAAACCGGCGAAAAAGGG-CTCCT-GGGACGTGATTGGGCCGATTTTTGGG
CGTCGGCAC-GGCAAAAACGTCTGGGGAGGGTC---TGTTGGGGGCGCGGTTGGAGATGCTTTAA---------------
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>chr1D_1
GCCTGGCGCGCATGTCTGGCGGCGCCAGGATGTTGGCCTCGAACATGAGCCACGCCTCCCACTCCTGGAGCGAGCGGCGG
CCGAAGCCGTTGGCCGCCGCGGCGTCGCCGGGGAAGCGTTCGGCCATCGGGAAGG---GAAGG---GGA-----GGAAAA
GGA-----------------------------------------GGTAGGCGACGCTCGGCG--GCG--GACGGGAGAGA
GGCAGAGAT----CGGCGGCGGGTTTTG---------------GGCTCAGGCTGGTGTGGCCAGCGGCGAGGGGGGGCTG
CTTGT-TTTA-TAG-CCCCTG-----CCGTGTGTACGCGTG-GCGGGAGAGGAGGCATCG---------C------CGCG
CCGCCC-GTGA---------------GGAATCAATGGCAAGGCTGACCGGCGGCAGCCTTGCCATTGATTCCCCGCGGGA
AACCGAGGCGT--TCTGGGGGAAGACGAGGC---------GTCTAGTCGCTAATGCGGCTGGCCCGCGGCTCTTTCGCGC
TAAAA----------CCGCTCGCCCCGGCGCCCCCGGGCACC--------CCC-AGCG----------CGCCTGGTTCGG
CCT-GGGTCCGCCCCCGCCAGTTTCGGCATAAGCCGGTGGAAAACGGGCTCCTGGGGGCGCGACTGGGCCAATTTTTGGG
CGCCGGCGC-GGAAAAAACGCCTGGG--GGGCC---TGTTGGGGGCGCGGCTGGAGATGCTCTAAGAAA-----------
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>chr3D_1
GCCCGGCGCACGTGTCCGGCGGCACCGGGATATTGGCCTCGAACAGGAGGTACACCTCCCACTCCTAGAGAGAGCGGCGG
CCGAAGCCGTTGGCCGCCGCAGCGTCGCCGGGGAAGCGTTCGGTCATCGATGAGG---GAAGG---GAAGGGGAGGAAAA
GGA-----------------------------------------GATAGGCAGAGCTTGGCG--GCG--GACGGGAGAGA
GGCAGAGCT----CGGCGGCTGGTTTTG---------------GGCTCGGGCTGGTGTGGCCAGCGGTGAGGGGAAGCCG
CTGGT-ATTA-TAG-CCCGCG-----CCGTGTGTACGCGTG-GCGGGAGGGGAGGCATCG---------C------CGCG
CCGCGC-GTGA---------------GGAATCAATGGCAAGGCTGATCGGCGGCAGCCGTGCCTTTGATTCCCCGCGGAA
AACCGAGGCGT--TCTGGGGGAAGACGAGGC---------ATCGTGTCGCTGACGCGGCTGGCCCGCGGCTCTTTCGTGC
CAAAA----------CCGCTCGCCCCGGCGCCCCCGGGC-GC--------CCC-AGCG----------CGCCGGGTTCGG
CCT-GGGTCCGCCGGCGCCAGTTTCGGTCCAAACCGGGGAAAAACGGGCTTCT-GGGACGCGACTGGGCCGATTTTTGGA
CGCCGGCGC-GGAAAAAACGCATGAGGAGAGCC---TGTCGGGGGCGCGGCTGGAGATGCTGTAA---------------
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>chr7B_1
GCCCGGCGCGCATGTCCGGCAGCGCCGGGATGTTGGCCTCGAAGAGGAGGTACGCCTCCCACTCCTGGAGAGAGCGGCGG
CCGAAGCCGTTGGCCGCCGCCGAATCACCGGGGAAGCGTTCGGCCATTGCTTAGT---GAAGG---GAAGGGGAGGAAAG
GCA-----------------------------------------GATAGGCAGAGCTCGGCG--GCA--GACGGAAGAGG
GGCAAAGAT----CGGCGGCTGGTTTTG---------------GGCTCGGGCTGGTGTGGCCAACGGCGAGGGGGAGCCG
CTGGT-TTTA-TAG-CCCGCT-----CCGTGTGTACGCGTG-GCGGGAGGGGAGGCGTCG---------C------AGCG
CCGCCC-GTGA---------------GGAATCAATGGCAAGGCTGACCGGCGGCAGCCTTGCCATTGATTCCCCGCGGGA
AACCGAGGCGT--TCTGGGGGAAGATGAGGC---------GCGGTGTCGCTAACGCGACTGGCCCGCGGCTCTTTCGCGC
CAAAA----------CCGCTCGCTCCGGCG----------CCTCCGGGCGCCCCAGCG----------CGCCGGGGTCGG
CTT-GGGTCCGCCGGCGCCAGTTTCGGCCCAAGCTGGCGAAAAACGGGCTTCTGG-AACGCGACTGGACCGATTTTTGAA
CGTCGGCAC-CGGAAAAACGTCTGGGAAGAGTC---TGTTGATGGCGCGGCTCGAGATGCT-------------------
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>chr6B_1
GCCCGGCGCGCATGTCTGGCGGCGCCGGGATGTTGGCCTCGAAGAGGAGGTACGCCTCCCACTCCTGAAACGAGCGGCGG
CCGAAGCCGTTGGCCGCCGCGGCGTCTCCGGGGAAAAGTTCGGCCATCGCTGAGG---AAAGG---GAAAGGGGGGGGAG
GGA-----------------------------------------GATAGGCAGAGCTCGACG--GCG--GACAGGAGAGA
GGCAGAGAT----CGGCGGCTGGTTCTG---------------GGCTCGGGCTGGTTTGGCCACCGGCGAGGGGGAGCCG
CTGGT-GTTA-TAG-CCCGCG-----CCGTGTGTACGCGTG-GCGGGAGGGGAGGCGTCG---------C------TGCG
TCGCCT-GTGA---------------GGAATCAATGGCAGGGCTAACCGGCGACAACCTTGCCATTGGGTCCCCGCGGGA
AACTGAGGCATCCT--GGGGGAAGACGAGGC---------GCGGTGTCGCTGACGCGGCTGGCCCGCGGCTCTTTCGCGC
CAAAA----------CCGCTAGCCCCGGCG----------CCG-------CCC-AGGG----------CGCTGGATTCGG
CCT-GGGTCCATCGGCGCCAGTTTCGGCCCAAACCAGCGAAAAACGGGCTCCTGGGGACGCGACTGGGCCGATTTTTGAA
CGACGGCGC-GGAAAAAACGCCTGGAGAAGGCC---TATCGGAGGCGCGGCTGGAGAT----------------------
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>chr4D_1
GCCCGGTACGCATGTCCGGCGGCGCCGGGATGTTGGCCTCGAAGAGGAGGTACGCCTCCCACTCCTGGAGCGAGCGGCGG
CCGAAGCCGTTGGCCGCCGCCGCGTCGCCGGAGAAGCGTTCGGCCATCGCTGAGG---GAAGG---GAAGGGGAGGAAAG
GGA-----------------------------------------GATAGGTAGAGCTCGGCG--GCG--GACGGGAGCGA
GGTAGAGAT----CAGTGGCTGG-TTTG---------------GGCTCGGGCTGGTGTGGCCAGCGGCGAGGGGGAGCCG
CTGGT-TTTA-TAGCCCCGCG-----CCGTGTGTACGCGTG-GCGGGAGGGGAGGCGTCG---------C------CGCG
CCGCCT-GTGA---------------GGAATCAATGGCAAGGCTGACCGGCGGCAGCCTTGACATTGATTCCCCGCGAGA
AACCGAGACAT--TCTGGGGA-AGACGAGGCGTGTTGTCAGCGGTGTCGCTGACACGGCTGGCCCGCGGCTCTTTCGCGC
GCAAAATGCTCGCCCCAGCACCCCCGGGCG----------CC--------CCC-AGCG----------CGCCGGGTTCGG
CCT-GGGTCCGCCG-CGCCAGTTTCGGCCCAAACCGGCAAAATACGGGCTCCTGGGTTCGCGACTGGACCGATTTTTTA-
CGCCGGCATGGAAAAAAACGTCTGAAAAGGACC---TGTTGAGGATGCGGGTGGAGATGCT-------------------
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>chr4D_1
GCCCGGCGCGCATGTCCGGCGGCGCCGGGATGTTCGCCTGGAACAGGAGCCAAGACTCCTGTTCGCGGAGCGAGCGGCGG
CCGAAGCCGTTGGCCGCCGCCTCATCTCCAGGGAAACGCTCGGCCATCGGGAGAG---GGAGG---GAGAGGGAGGGCTC
GACGGCGACGCTCGGGAGAGGGAGGACTCGGCGGCTACTCTCGGGAGAGGTAGAGCTCGGCGTCTA--------------
---------------------------G---------------GGCTAGGGCTGGTGTGGCCAGAGGCGAGGGAGGCCAC
CGGCT-TATA-TAG-CCGCGCCGCGCCCGTGTGTACGCGTGCGAGGGAGGGGAGGCGTCGGCGCGTCGCCCCGTGACGCG
CCGCCC-GTGA---------------AGAATCAATGGTAAGGCTGACCGGCGGCAGCCTTGCCATTGATTCCCCACGGGA
AACCGAGGCGT--T--GGGGGAAGACGACGC---------GCGGTGTCGCTGACGCGGCGGGCCCGCGGCTCTTTCGTGC
CAAAA----------CCGCTCGCCCCGGCG----------CC--------CCC-AGCG----------CGCCGGGTTCGG
CCT-GG-TCCGCCGGCGCTAATTTCGGCCCAGGCCGGCGAAAATCGGGCTCCTGGGGACGCGACTGGGCCGATTTTTCTG
CGCCGGCGC-GAAAAAATCGCCT-GGGAAGGCC---TTTCTGGGGCGCGGCTGGAGATGCT-------------------
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>chr2D_1
GCCCGGCGCGCATGTCCGGTACCGCCGGGATGTTGGCCTCGAACAGGAGCCACGACTCCTATTCGTGGAGAGAGCGGCGG
CCGAAGCCGTTGGCCGCCGCCTTGTCGCCGGGGAAACATTCGGCCATCGGGAGAG---GGAA-----AGAGGGAGGGCTC
GGCGGCGGCGCACGGGAGAGGGAGAG------------------------------------------------------
GGAGG-G-CTCGGCGACGGCGCACGGGAGAGGTAGAGCTCGGCGGCAAGGGCTGGTGTGGCCAGAGGCGAGGGAGGCCAT
CGGCT-TATA-TAG-CCGCGCCGCGCCCGTGTGTACGCGTGTGCGGGAGGGGAGGCGTCG---------G------CGCG
CCGCCCTGTGACGCGCA-GCCCGTGAGGAATCAATGG-AAGGCTGACCGGCGGCAGCCTTGCCATTGATTCCCCGCGGGA
AACCGAGGCGTTCT--GGGTGAAGACAAGGC---------GCGGTGTCGCTGACGCGGCTGGCCCGCGGCTCTTTCGCGC
CAAAG----------CCGCTCGCCCCGGCG----------CC--------CCC-AGCG----------CGCCGGGTTCGG
CCT-GGGTCCGCCGGCGCTGATTTCGGCCCAGGCCGGCGAAAATCGGGCTCCTGGGGGCACGACTGGGCCGTTTTTTCGG
CGCCGGCAC-GAAAAAATCGCCTGGGGAGGCCT---TTCTGGGGCCGCGGCTGGAGATGCT-------------------
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>chr5D_3
--CCGGCGCGCATGTCCGGCGGCGCCGGGATGTTGGCCTCGAACAGGAGCCACGCCTCCCACTCTTGGAACGAGCGGCGG
CCGAAGCCGTTGGCCGCCGCGGCGTTGCCGGGGAAGCATTCGGCCATCGGGAAGG---GAAGG---GAA-----GGAAAA
GGA-----------------------------------------GATAGGCGACACTCGGCA--GCG--GACGAGAGAGA
GGCAGGGAT----CGGCGGCGGG-TTTT---------------GGCTCGGGCTGGTGTGGCCAGCGACGAGGGGGAGCCG
CTGGT-TTTA-TAG-CCCGCG-----CCGTGTGTACGCGTG-GCGGGAAAGGAGTCGTCG---------C------CGCG
CCGCCT-GTGA---------------GGAATCAATGGCAAGGCTGACCGGCGGCAGCCTTGCCATTGATTCCCCGCGGGA
AACCGAGGCGT--TCTGGGGAAAGACGAGGC---------GTCGTGTCGCTGACGCGGCTGGCCCGCGGCTCTTTCGTGC
TAAAA----------CCGCTCGCCCCGGCG----------TC--------CCCGGGCGCTCTCCAGCGTGCTGGGTTCGG
CCTAGG-TCCGCCGGCGCCAGTTTCGGCCCAAGCCAGTGAAAAACAGACTCCTGGGGATGCGACTGGGCCGATTTTTCGT
TGCCGGTGT-GGAAAAAACATCTCGGGAGGGCC---TGTTGGGGGCACGGCTGGAGATGCTATGAGGA------------
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>chr1D_5
----GGCGCGCATGTCCGGCGGTGCCGGGATGTTGGCCTCGAACAGAAGCCATGCCTCCGACGACTAGAGCGAGCGGCGG
CCGAAGCCGTTGGCCGTCGCGGCGTCGCCGGGGAAGCGTTCGGCCATCGCTGGAGAGGGAAGGAGGGAAGGGGAGAACGG
GGG-----------------------------------------AGAT---AGAGCTCGGCGGCGCG--GACGG--GAGA
GCAGA-G-CTCGGCGGCGGCTGG-TTTG---------------GGCTCGGGCTGGTGTGGCCAGCGGTGAGAGGGAGCGG
CGGGTCTTTA-TAG-CCCACG-----CCATGTGTACGCATG-GCGGGAGGGGAGGCTTCG---------C------CGCG
TCGCCC-GTGACGCGTCGGCCCGTGAGGAATCAATGG-AAGGTTGACCAGCGGCAGCCTTGCCATTGATTCCCCCTGGGA
AACCGAGGCGC--TCTGGGGGAAGACGAGGC---------GTCGTCTCGCTGACACGGCTGGCCCACGGCTCTTTCACGC
CAAAA----------CCGTTCGCCCCGGCG----------CC--------CCCCGGCG----------TGCCGGGTTCGG
CCT-GGGTCCGCCGGCGTCAGTTTCTGCCCAAACCGGCGAAAAACGGGCTCCTGGGG-CGCGACTGGGCCGACTTTTGGG
TGCCAGCAC-GGCACAAATGCCTGGGGAGGGCC---TGTTGGGGGCGCGGCTGGAGATGCTCTAAGGA------------
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>chr5D_23
----------------------CGCCGGGATGTTGGCCTCGAACAGGAGCCACGCCTCCGACGCCTGGAGCGAGCGGCGG
CCGAAGCCGTTGGCCGCCACGGCGTCGCCGGGGAAGCGTTCGGCCAACGCTGGAGAGGGAAGG---GAAGGGGAGGACGG
GCG-----------------------------------------AGATAGCAAAGCTCGGCGGCACG--GACGGGAGAGA
GCAGA-G-CTTGGGGGCGGCTGG-TTTG---------------GGCTCGGGCTGGTGCGGCCGGCGGCGA-GGGGAGCGG
CGGGT-TTTA-TAG-CCCGCG-----CCGTGTGTACGCGTG-GCGGGAGGGGAGGCGTCG---------CCCGTGACGCG
CCGCCC-GTGA---------------GGAATCAATGGCAAGGCTAACCGGCGGCAGCCTTGCCATTGATTCCCCGCGGGA
AACCGAGGCTC--TCT-GGGGGAGACGAGGC---------GTCGTCTTGCTGACGCGGCTGGCCCGCGGCTCTTTCGCGC
CAAAA----------CCGCTCGCCCCGGCG----------CC--------CCCGGGCGCCCCAGCGCC--CCGGGTTCGG
CCTGGG-TCCGCCGACGCCAGTTTCGGCCCAAACCGGCAAAAAAAGGACTCCTGGGG-CATGACTGGGCCGATTTTTGGG
CGCCGGCGC-GGCAATAACGCCTGGGGAGGGCA---TGTTGGGGGTGTGGCTGGAGATGCT-------------------
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>chr5D_617
GATGCAG-------------------------------------------------------------------------
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---------------------------------------------------------------AAGGAAGACGCTGCTTA
GTAGGCAGGAAATGAAAGGGCATCTTTTCTTTTCTTG-AAAAATACAACTTTTTCTATTAAAAAAAGAGAGAGATTGTAA
CCTT---TTTTTTAGAAAGAATATAACTTGTTCTTCAAGCAATGGAACATCCAAAATCGGCCGCCAAAAACGGCATGTGC
GCATTTAAAGCATC---GATACGGACGAGGG-ACACGCTGGGCGAAACAAACGGGCTGCAAAAGAAAGAAATCG------
------------ACTCAGAACCGCCGCTCTTC------------------------------------------------
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---------------------------------------CGATCACGCCACGAAACGGAGCCTAACCTTTACAGCACCTT
GATCCGAAC-CATGACACGTACGTCCTCTTCCCACCAACCGAGTCGGGCTTGATCCGTGCGGCCGGCGCACCCATATATA
CGCGCGCGCGCCTCC---CCACGTGGG--CACCCAGCGAGAGAAACCCAACCGTCGTCGTGCACACAGCTTTGCAAGCCC
CGCGCACGCGAAGCTCCGGCGAACGAACTCGGCG---AGGGATCGTATCGATGGCGGGGGAGGAGCAGACGGTGCTGGTG
CGGTGCGCGGACCTCGCCAAGTTCGCGGTGCCGGCGTCGGTGGCGCGGCGGGCGGGGAGCGTCGCGGCGGCGCTGGAGGC
GGGGCAGAGCGTGGTGGAGCTGCCGCGGGGGGTCTCCGGCAAGGGCCTCGCCACGGCGGTCGCGTACTACCAGGCCCGCG
CCGAGGCGGAGGCGCGCGGCGCGGACGGCGGCGAGTTCGACGGCGAGTTCGTCCGCGGGCTGACGCACGACGCCGCCATC
GACCTCATCTACGCCGCGCACCACCTCGGCGACGAGGCGCTCTTCAACCTCTTTGCAGGCTACAGGGCTAATTAGTT---
--TAAGTAGTTGGTTCTATAAGAGTCGCAGTGAAGCTTTTTACTTGATTAATTTGTGTGTTGATCGAGTGAAATTTTCCT
TTTT---CTCCTTGTAT---CGACG---CTATCTTGTGATTATAATTATGTCATA---CAT--CGTGAACTGTCTTGATT
TTCTCTTTTGATGAAACC--AGTTTACATTGTCTTGATTTCAATCCGTTGATCCGCATCCTATCGCTTTGTTTGAGACCC
C-TCACAACAGAAAAAGGAAGG---AAAACACGATCGAGCACCAAAAACAGGACCAATGGAGACGAAACCAAGGTCGTGG
ACAAAAATAATAATAACACGAACTAGCAGCGACAAGCACGAAGCGCATGCAGACGGGACAAAAATGGAAGCGAGGCGCGC
GATGCACAAGAAACCGAAATAAACGAACAGCATCGGCCACGGCGACACTTCCAAACAACGTAGGGAAAAGCATCGCTTTG
AACACAGTGTATAGAAAGAAAGAACAAAAACAGATCCGCAGCACAATCGGCCAAGAAATATATATA-TTTTTAAAGGCAA
TCG--------GCCAAGAATTACGGATACATAAAGGGCATGATCGTGTTAGAGC--------------------------
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>chr5B_625
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---------------------------------------------------------------AAGGAAGACGGTGCTGA
GTAGGCAGGAAATGAAAGGGCATCTTTTCATTGCTGGAAATAATATAACCTTTTCTTACAAAAAA-----GAGATTGTAA
CCTTTTCTTTTTGAAAAAGAGCGCAACTTTTTCTTCAAGCAATGGAAAATCCAAAATCGCCCGCCAAAAATGGCATGTGC
GCGTTTAAAGCATCATCGATACGGACG-GGGGACACCATGGGCGAAACAGACGGTTTGCAAAAGAAAGAGATCG------
------------ACTCACAACTGCGAAAGTGCCTTTCTGCTCCCGAGCTCATTTGAGCTCGGTGAACAGTAAAATCGAAA
AAAATTCAAAAACAATTCAAAAAATTCCAAAAAAAATCCCAGAGAAACATTGACAAAAGTTCTAAGTGCTTGCAAAAATT
CATCATGAAATCACATTCCTGTAAGCGTGACAAAAGAAAAACAAATTCAGCCTCCAAAATGCTTTTGAAAGTAGCATTTT
CAGAGTACCGATTTTGTTTTTTTTTGCCACGCCTTCTAGAAATGTGATTTCATGACGAATTTTTGCAAGCACTTAAAACT
TTTGTCAATGTTTCTACCAAAAATTTTTGGAATTTTTTGAATTTTTTTTGATTTTTTTTCGGTTTTACTGTTCACCCGAG
CTCATATGAGCTCGGGTGCAGAAACTCCACGTCCAACTGCGATCACGCCACGAAACGGAGCCTAACCTTTACAACACCTT
GATCCGAAC-CATGACACGTACGTCCTCTTCCCACCAACCGAGTCGGGCTTGATCCGTGTGGCCGGTGCACGCATATATA
CGCGCGCGCGCCCCCTCCCCTCGT-GGCACACCCAGCGAGAAAAACCAACCATCGT------------CTTTGGAAGCCC
CGCGCACGCACAGCACTAGCGAACGAACT---CG---AGGGATCGTCGCGATGACGGGGGAGGAGCAGACGGTGCTGGTG
CGGTGCGCGGACCTCGCCAAGTTCGCGGTGCCGGCGTCGGTGGCGCAGCGGGCGGGGAGCGTCGCGGCGGCGCTGGAGGC
GGGGCAGAGCGTGGTGGAGCTGCCGCGGGGGGTCTCCGGCAAGGGCCTCGCCACGGCGGTCGCCTACTACCAGGCCCGGG
CCGAGGCGGAGGAGCGCGGCGCGGACGGTGGCGAGTTCGACGGCGAGTTCGTCCGCGGGCTGACGCACGACGCCGCCATC
GACCTCATCTACGCCGCGCACCACCTCGGCGACGAGGCGCTCTTCAACCTCTTTGCAGGCTACAGGGCTAATTAGTTCAT
TATAAGTAGTTGGTTCTATAAGAGGCGCAGTGAAGCTTTTTACTTGATTAATTTGTGTGTTGATCGAGTGAAATTTTCCT
TTTT---CTCCTTGTAT---CGACG---CTATCTTGTGATTATAATTATGTCATACATCAT--CGTAAACTGTCTTGATT
TTCTCTTGTGATGAAACC--AGTTTACATTGTCTTGATTTCAATTTGTTGATTCGCATCCTATCGCTTTGTTTGAGACCC
C-TCACAACGGAAAAAGGAAGAAAAAAAACACGATCGAGCACAAG-AACAGGACCAATGGAGACGAAACCAAGGTCGTGG
ACAAAAATAATAATAACACGAACTAGCAGCGACAAGCACGAAGCGCATGCAGACGGGACAAAAATGGAAGCGAGGCGCGC
GATGCACAAAAAACCCAAACAAACAGCAT--ATCGGCCACGGCGAGACTTCCAAACAACGCACGG-AAAGCATTGCCTTG
AACACAGTGTATTGAAGGAAAGAACAAAAACAGTTCCGCAGCACAATCGGCCAAGAAATATATAT--TTTTTAAAGGCAA
TCGAGCAATCTGCCAAGAATTACGGATACATAAAGGGCGTGATCGTGTTAGAGC--------------------------
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>chr5B_721
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--TTTTCTTTTTGAGAAAGAACGCAACTTTTTCTTCAAGCAATGGAAAATCCAAAATCGCCCGCCAAAAACGGCATGTGC
GCGTTTAAAGCATCATCGATACGGACG-GGGGACACCCTTGGCGAAACAGACGGGTTGCAAAAGAAAGAAATCAAAAAAA
AGAAAGAAATCAACTCAGAACTGCCGCTTTTC------------------------------------------------
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---------------------------------------CGATCACGCCACGAAACGGAGCCTAACCTTTACAACACCTT
GATCCGAAC-CATGACACGTACGTCCTCTTCCCACCAACCGAGTCGGGCTTGATCCGTGTGGCCGGTGCACGCATATATA
CGCGCGCGCGCCCCCTCCCCTCGT-GGCACACCCAGCGAGAAAAACCAACCATCGT------------CTTTGGAAGCCC
CGCGCACGCACAGCACTAGCGAACGAACT---CG---AGGGATCGTCGCGATGACGGGGGAGGAGCAGACGGTGCTGGTG
CGGTGCGCGGACCTCGCCAAGTTCGCGGTGCCGGCGTCGGTGGCGCAGCGGGCGGGGAGCGTCGCGGCGGCGCTGGAGGC
GGGGCAGAGCGTGGTGGAGCTGCCGCGGGGGGTCTCCGGCAAGGGCCTCGCCACGGCGGTCGCCTACTACCAGGCCCGGG
CCGAGGCGGAGGAGCGCGGCGCGGACGGTGGCGAGTTCGACGGCGAGTTCGTCCGCGGGCTGACGCACGACGCCGCCATC
GACCTCATCTACGCCGCGCACCACCTCGGCGACGAGGCGCTCTTCAACCTCTTTGCAGGCTACAGGGCTAATTAGTTCAT
TATAAGTAGTTGGTTCTATAAGAGGCGCAGTGAAGCTTTTTACTTGATTAATTTGTGTGTTGATCGAGTGAAATTTTCCT
TTTTTTTCTCCTTGTAT---CGACGATGCTATCTTATGATAATTATTAT-------------------------------
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---------
>SNPs
---------------------S----------------------------------S-----------------------
------------------------------------------S-----------------------S-------------
--------------------------------------------------------------------S-----------
------------------------------------------------------S---------------S-S-------
--------------------------S------------------------S---S------------------------
---------------------------S----------------------------------------------------
------------------------------S------------S-----S----------------------------SS
---------------S-S----------------------------------------------------S---------
-----S----------------------------------------S------------------------------S--
---S------S----------------------SSS-------------------------------------S------
---------S--------------S------------------S---SS------S---S--------------S-----
-------------------S---------------S---------------------S---S-S----------------
S--------------------------------------S----------------------------------------
------------S------S------------------------------------------------------------
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---------S----------------------------------------S-----------------------------
------------S-------------------------------------------------------------------
S---------S-----------------------SSS------S-SS---------------------------------
--------------S---------SS------------------------------------------------------
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
------S----------------------------------S--------S------------S--------------S-
----------------SSSS---S--------------------------S----S-SSSSSS----------S------
-S---S---------SSSSS-----S---------------S----SS------S-SS-S-S---------S------S-
-S------------S-S-SSS------S----S--S-------------------------------S---------S--
---------S--S-------------------------------------------------------------------
--------------------S--S----------------SS--------------------------S-S---------
------SS---S----------------S------------S-------S------SS-SSS-S-SS----S--------
-----------S----S--------------S----------S--------S--SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS
>forward_754
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--------------AAAACGTCTGGAGAGGGTCG----------------------------------------------
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>reverse_2893
--------------------------------------------------------------------------------
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------------TACGGAACGGGTTTGGAAGG------------------------------------------------
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---------
