>input_sequence_79339
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----------------------------------------------ATGGCTCAGCCTGAGGAC----------------
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---------------------------------------------------------------AGGATCATCGCCGGCGT
CTTCATCGGCATCGTGGCCTCCCTGCTCGTGTCCATCATCGTGTGCAGCCTCTGCCGGGGCCACCGCAACGGC-------
--GCCGCGGCGGCCGCCCGGGCGCGGCCGCTGCCGGGGCGTGCTACAGTCACCACTACTGTCCG---CGTCGACCAGCGG
CAGCTTCGCCAGGCCTGCGCCGCCGGCGTGACGGCCGGCCTCCCGGCGTTCACGTACAGCCCGTCGGTGAAGCACAACGT
GACGGGCGGAGGGGAGG---AGGCGGCGACGTGCTCGGTTTGCCTCGGCGCGCTGCAGCTAGGAGACACGGTGCGGCTGC
TGCCGGCGTGCCTGCACGTGTACCACGCGGAGTGCATCGACCCTTGGCTGGGCG--------------------------
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---------------CGCACTCGACGTGCCCGATCTGCCGCTCCGACACTGA---------------------CCCGGCC
ACGGGCGTCGGCTGTCTACCACCTGCCTAG--------------------------------------------------
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>chr7D_1_TraesCS7D01G332200
CATCACTTCTGTCATCTAGCATGCTAGGTTTACATGACGAGATTAGATGGCAAACCTTGGGCCGCGGTGTAGACGTCGCC
GGAGTACGACGGCGGTCCTTCAGGTAGGGCTCTAGCCAGCGGCGACGAAGGACGGCCGAGGGTGAGATGCAAGACGGCGG
CGGCGTGCAAGATGAGGGCCGCGGTGTAGACGTCGCCGCCGTAGGTCGACGCGGGCCGGATCCGCGACGGGGGACGGCAG
CGCGGTCAGTCGTAGCCGACGCGCCGTCGGACGACGACGTTCAGATGCGGCGTCGGATGGGGTTCAGTCGGCGGCGATCG
GCCGCGGCGGCGTTCGGCCGCGGCGGCGATCGCACGGTTGGAAAATGGACGTGATCGACGTCCGTGATCGTCGGGCGGGC
GAGAAGATCGTGCAGACGCCTTTTTTCCCGTACACGCGCGGCGGTCTTTTTTTTTTGCATCCGTGGAGGTATACGGACGT
CGGTCTATACAGTATGATAGGAGGTGGGTATACGATTCTTTTTTTTTTTTGATAAACATGGGTATACGATTCTTTCGTAT
GCCCATTATGCCCTTCTACGTTTTGTGGGGGGTCTACCGAAGCAAGGCCCTTTAAGTAATAAAGTAATAAAGTGTTCCTT
ATCAGAAAATGCTGATCTTTTGCTTTTCTTTGTGGGGGTTCCAACACGCTGATCTGCGCAGCACATTCACACGAACAGCC
TTCGCAGCGTCAGCGTACCGCCGCCGTCCGGTCCGGTCCGATTGCTTGCTTGCTGTCGCGTACAAACAAAATATAACCAT
GCCAGCGGCCAGCCCCGTGACTTCCCCTTCGATA---CAACGTAGAAGCGAGTTTGGCAATATTTAGTTTTT--ACTTCT
AAACAATTCGACAGGATTGGCTTC-AAGTAGTCGCGTTGATTCGCCATTAGTTTACTCAAAACTCGTGCTATAAACCATG
CTGCAAACATCAATGGTTACCGTGCAGCTGCCACTCCACCAAGCCAATGGCTCAGCCTGAGGAC----------------
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---------------------------------------------------------------AGGATCATCGCCGGCGT
CTTCATCGGCATCGTGGCCTCCCTGCTCGTGTCCATCATCGTGTGCAGCCTCTGCCGGGGCCACCGCAACGGC-------
--GCCGCGGCGGCCGCCCGGGCGCGGCCGCTGCCGGGGCGTGCTACAGTCACCACTACTGTCCG---CGTCGACCAGCGG
CAGCTTCGCCAGGCCTGCGCCGCCGGCGTGACGGCCGGCCTCCCGGCGTTCACGTACAGCCCGTCGGTGAAGCACAACGT
GACGGGCGGAGGGGAGG---AGGCGGCGACGTGCTCGGTTTGCCTCGGCGCGCTGCAGCTAGGAGACACGGTGCGGCTGC
TGCCGGCGTGCCTGCACGTGTACCACGCGGAGTGCATCGACCCTTGGCTGGGCG--------------------------
--------------------------------------------------------------------------------
---------------CGCACTCGACGTGCCCGATCTGCCGCTCCGACACTGA---------------------CCCGGCC
ACGGGCGTCGGCTGTCTACCACCTGCCTAGGCTAGGCTTTTGCGTGGCGAGGTGCATACTAGTACTCGCTACGTACTGCC
TTGGAGGTTCGCATTGAATAGGTGTACAT-TGACGAGTGTAACATTGCTGTAAATAAACTTTAGTATCTACATAGAGCAT
CTACAGCCAGACGCCTCAAACCATTTCTCGTATGTCTACGGACACGCTCGGTCGGACAAGAGAGAAGAAAATGTGATCCA
CCCGAACCCCTTATATCATCCCTATACGTTCGAGCTGTCCGCGAACCTCATATCCATCTTAAATGTAGGGAGGATATAAG
GGCTCGCGGACGCGCCCGGACAGTCTACCACGTAGGACGCGGCCCCACCCCGGAACCACCTTTTCTTTTTCTTTATTCAT
TCTTTTATATTTCTCTTTTCATCTCCACCAATCCCGTGAAAGTGGCCGGACATATAAGGAGTGTGGCTGCGTGAACGGAC
AAATAGGGGCTCAAAACGGACACACACGGTCACTGACCGAGCGTGTTCAGGAGCGTTTAAGGAGTCATATTTACTATGTC
CGGCTGTAGATGCTCTTAGGTCACTAGGCAGGAGAAGGCAGGAATGTATAAATAAATCTATTTGTCTCCTTGAGAAGTAA
TCCAGGTGGCCTGGGTTCGATTCTCACTCTACCTCGGTGAGATTGTTACTAGTTCTTCAAGTTACTTTATTCCTGAATTC
TGAATCGCGCAGCTGCGCTTGTTCGCTGTCTCAAGCGCACGCGCTCCAGCGATCCAATCCGCGCGCGATCCGCTTCCGAC
CGGGTGCCGTTACAGGATTACGCGGGGCGTGCGGCGCGTGGTGGGCCCGACACCTTTATTCCAGGCGAAATCGCCCGCAC
CCCCCGCTCCTCTTGTTCGAAACCGCCCGCCCGCACCCTGCAGAGATTTCATTTGAACTCCTCCCCGTCTCCCTTCCTCT
CCTCTAGCAACGACGCGACGAGGCGAGGTGCTGCGGTGGTGGATCCGACACGGAGTCGCCGGTGCGGGAGG
>chr7B_5
ACTCCTA----TCATCTAGCATGCTAGGTTTAGATGACGAGATTACATGGCAAACCTTGGGCCGCGGTGTAGACGTCGCC
GGTGTACGATGACGGGCCTTCAAGCAGGGGTCTAGCGAGCGGCGACGTGCAAGA--CGAGGGTGAGATGCAAGATA----
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----------------------GCGGCGACGTGCAAGACGA---------------------GGGCCATGGTGTAGACGT
CGCCGGCGTAGGTTGACGCGAGCCG-------------GATCCGCGGCGGGGGGGACGACGGCACGGTCAGTCACAGCTA
ACAAGTCGTCGGACGGTGATGTTCAGATGTGGCGTCGGATGGGGTTTAGTCGGCGGCGATCGGCCACGGCGGTGATCGCA
CAGTTGTAAAATGGACGTGATCGACGTGCGTGATCGTCGGGCGGGCGAGAAGATCGTGCAGACGCCTTTTTTTCCCGTAC
ACGCGCGGCGGTCATTTTTTTTGGCATTCTTGGAGGTATATGGACGTC--GGTCTATACGGTATGATAGGAGGTGGGTAT
ATGTTTCTT-----------------------------------------------------------------------
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>chr7A_649
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--------ATGCTGATATTTTACTTTTCTTTGTGGGGGTTCCAACACGCTGATGTGCGCAGCACATTCACACGAACAGCC
TTGGCAACGTCAGCGTACCGCCGCCGTCCGGTCCGGTCCGG----TTGCTTGCTGTCGCGTACAAACAAAATATAACCAT
GCCA------AGCCCCGTGACTTCCCCTTCGATAGAACAACGTACAAACGCGTTTGGCAATATTTA-TTTTT--GCTTCT
AAACAATTCGACAGGATTGGCTTCCAAGTAGTCGCGTCGATCCGCCATTAGTTTACTCAAAACTCGTGCTATAAACCATG
CTGCAAACATCAGCAGTTACCGTGCAGCTGCGACTCCACCAAGCCAATGGCTCAGCCTGAGGAC----------------
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---------------------------------------------------------------AGGATCATCGCCGGCGT
CTTCATCGGCATCGTGGCCTCCCTGCTCGTGTCCATCATCGTGTGCAGCCTGTGCCGGGGCCACCGCAACGGC-------
--GCCGCGGCGGCCGCCCGGGCGCGGCCACTGCCGGAGCGTGGTACAGTCACCACTACCGTGCG---CGTCGACCAGCGG
CAGCTTCGCCAGGCCTGCGCCGCCGGCGCGACGGCCGGTCTCCCGGCGTTCACGTACAGCCTGTCGGTGAAGCACAACGT
GACGGGCGGAGGGGAGG---AGGCGGCGACGTGCTCGGTGTGCCTCGGTGCGCTGCAGCTAGGAGACACGGTGCGGCTGC
TGCCGGCGTGCCTGCACGTGTACCACGCGGAGTGCATCGACCCGTGGCTGGGCG--------------------------
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---------------CGCACTCGACGTGCCCGATCTGCCGCTCCGACACTGA---------------------CCCGGCC
ACGGGCGTTGGCCGGCTACCACCTGCTTAGGCTTT-----TGCGTGGCGAGGGACGAGCATAG------TACGTACTGCT
TTACAGGTTCACACTGAATAGCTGTCACGGTGACGAGTGTAACATTGTTG------------------------------
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>chr7B_649
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--------ATGCTGATATTTTACTTTTCTTTGTGGGGTTTCCAGCACGCTGATCTGCGCAGCACATTCACACGAACAGCC
TTGGCAGCGTCAGCGTACCGCCGCCGTCCGGTCCGGTCCGG----TTGCTTGCTGTCGCGTACAAACAAAATATAACCAT
GCCA------ATCCCCGTGACTTCCCCTTCGATACAACGT--TAGAAGCGCGTTTGGCAATATTTA-TTTTTTTGCTTCT
AAACAATTCGACAGGATTGGCTTCCAAGTAGTCGCGTTGATCCGCCATTAGTTTACTCAAAACTCGTGCTATAAACCATG
CTGCAAACATCAATGGTTACCGTGCAGCTGCCACTCCACCAAGCCAATGGCTCAGCCTGAGGAC----------------
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---------------------------------------------------------------AGGATCATCGCCGGCAT
CTTCATCGGCATCGTGGCCTCCTTGCTCGTGTCCATCATCGTGTGCAGCCTCTGCCGGGGTCACCGCAACGGC-------
--GCGGCGGA----------------------CCGGAGCGTGGTACAGTCACCGCTACTGTCCG---CGTCGACCAGCGG
CAGCTTCGCCAGGCCTGCGCCGCCGGTGCGACGGCCGGGCTCCCGGCGTTCACGTACAGCCTATCGGTGAAGCACAACAT
GACGGGCGGAGGGGAGG---AGGCGGCGACGTGCTCGGTTTGCCTCGGCGCGCTGCAGCTAGGAGACACGGTGCGGCTGC
TGCCGACGTGCCCGCACGTGTACCACGCGGAGTGCATCGACCCGTGGCTAGGCG--------------------------
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---------------CGCGCTCGACGTGCCCGATCTGCCGCTCGGACACGAA---------------------CCCGGCC
ACGGGCGTTGGCCAGCTACCACCTGCTTAGGCT-----------------------------------------------
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>chr7D_1014
GTGCGCGTCGACGTGGGGCAGCTTCACCGGGCCTGCGCCGCCAGCCCGACGGCCGGCCTCCCGGCGTTCACGTACAGCCT
GTCGGTGAAGCACAACGTGACGGGCGGAGGGGATGAGGCGGCGACGTGCTCGGTGTGCCTCGGCGCGATGCAGGTCGGCG
AGATGGTGCGGCTGCTGCCGGCGTGCCTGCACCTGTACCACACGGAGTGCATTGACCCGTGGCTGGCCGCGCACTCGACG
TGCCCGGTATGCCGCTCGGACACCGACCCGGCCGCTGTCTCGCTAGATGCACATTTTGACGGGTGTTAATTTGTTGGATT
GATTTTGCTTTCTGTATATATTGAAAAATACGTCTACTCAGTTGTCTGGGCAACATAAGATTGGAATGTCCAAATGATGC
ATCTGTCCTATATTTGCTAATAGTAGTAGTATTTGTGGACGTCCTGATGGTCATTTGATCTCCAA-----TGTCTCGAAG
ATCTCACTCTCCCGGTTTTGTCTGGGGATCAGATATTTGTGGGGGTGATAGCCTTTTTTTCTTCTTCTGAAAACCTTCTT
ATTACACGGTTCTCCAGTAGAACTGTCGAGAACATCCACACTGGCATCGTCGAACCATCTGAAAGAGGACTCTCATAAAT
GCCACACGTGTTGCACAAACACATGACACCTCCGAACGTTTTTTTACGACAAGTTTAATGACAAGCGGATGTCAACATTA
GTTGTTAAGCATGACAATTTCATTTTCAAATGGCAAGCTTTAGTTTTTTTTTTAGATGACAAAT----------------
---TTTAGTTGTAAAAAACGTCAAGGCCAGAATGCTTCCTGTC---------ACACTTATCATTTGAGCTGAAATAAGGA
TCATGTGTGTTATTATGTAGCTCCCGCAAAAAAAAGTTGTCATTATGTAGCTCCCGCAAAAAGAAGGTGTGTCATTATGT
ATTATGTACTCCCTCCGTCCTACATCCGTATCTAGACAAATCTAAGACAAGCATTTTGGGACGAAGGAAGGGAGTAGAAG
GGATACATTTTTCACTTACAAGGATACATCCATATTTAACAAATCTAAGACAAGAATTTTGGAACGGAGGGAGTAGAAGG
GATGCATTTTTTCACTTACAATTGGAATTGGGTATGTCCGCAGTCCACCCACACTCGCACCCTTCCTAGCCTTCATCTCC
TCAACGTCGCCGAAGGATGCCGCCGAGCGAAGCCCATGACGTCGAC-GCAGCGGTGCCACGACGTCGATTGGTTTTGTGC
CGCAGTTTCCCCTTCATTGAACGCGCATTTGGCCCTGAATCAGCAATCAATTAATTAACCCCTTTGACCACAGGCTTGCA
AGTAATA---GTTGCTTTTATTCGGCTTAATAATT-----------------------TGCTTAAACCATACCGCAAACA
GCAGTTGCGAACGACGCGCACCAATGGCTCAATTGCCCCCGGGCTTCGTCCCCACTGTT---TCTCCCCCTCCACCGTGG
TGGCCATTCCATCCTTCACCACCGCCGCCGCCGTCCAATGCTAAGCCATCGTCCACTCAAGGCAGGATACTCGCCGGCCT
CCTCGTCGGCGTCGTGGCGTCCTTGATCGTGTTCACCGCCGTGTGCACCCTCTGCAGGGAGTACCGCGATCGTCGCGCCC
GAGCCGCGGCCGCCGCTTGGCGGTGGCCCGTGCCGGAACGTAATGGC------------GTCCG---CGTCGAGGAGCGG
CAGCTTGGCCGGGCCTGCGCCGCCAGCCCCACGGCCGGCCTCCCGGCGTTCACGTACAGCCCGTCCGTGAAGCACAACGT
GACGGGCGGTGGGGAGG---AGGCGGCGACGTGCTCGGTGTGCCTCGGCGTGCTGCAGCTAGGGGAGACGGTGCGGCTGC
TGCCGGCGTGCCTGCACCTGTACCACGCGGAGTGCATCGACCCGTGGCTGGAGG--------------------------
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---------------CGCACTCGACGTGCCCGATCTGCCGCTCCGACACCGG---------------------CCCGGCC
GCGGGCGCCGGCTGGCTACCGCCTGTTTAGGTTTTTA-TTTACGTGGCGAGGTCTATAGTAGTAC---------------
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>chr7A_1014
GCGGC--------------AGCTTCACCGGGCATGCGCCGCCAGCCCGACGGCCGGGCTCCCGGCGTTCACGTACAGCCT
GTCGGTGAAGCACAACGTGGCGGGCGGAGGGGAGGAGGCAGCGACGTGCTCGGTGTGCCTCGGCGCGCTGCAGGTCGGCG
AGACGGTGCGGCTGCTGCCGGCGTGCCTGCACCTGTACCACGCCGAGTGCATCGACCCGTGGCTGGACGCGCACTCGACG
TGCCCGCTCTGCCGCTCCGACACCGACCCGGCCGCTGTCTAGCTAGATGCACATTTTGACGGGTGTTAGTTTGCTGGATT
GATTTTGCTTGCTGTATATATTCAAAAATACGTCTACTCAGTTGTCTGGGCAACATAAGACAGGAATCTTCAAATGATGC
ATCTGTCCTATTTGCA-----------AGTATTTGTGGACGTCCTCAGGGTCATTTGGTCTCCAATGTCTTGTCTTGAAG
ATCTCACTCTCCCGGCTTTGTCTTTGTGG-----------------------------------------AAACCTTCGA
ATTATACGGTTCCCCAGTAGAACTGTTGAGATCGTCCGCAATGGCTTCGCCCAACCATATGAAAGGGGACCTTTATAAAT
GTCACACGTACGATACAAACACATGGCAACTTTGAACGTTTTTTATAATAAATACAG-TGACGCGAGGATGGCAATTTTA
GTTGTCAAGCATGGCAACTTCCTTTTCAAATGACAAGTTTTAGTATTTTTTAGTTAGTTTTTTCTTTTCGGATGGTAGTT
TTATTTAGTTGTAAAAAACGCCATGACCGGAGTGCTTCGTGCCACAAGTGTGACACTTATCATTTGGGCTGAAATAAGGA
TCATGTGTGTGTCATTAT--------------------------------------------------------------
-------------------------------------------------------------------------GTAGAAG
GGATGCAATTTTCGCTTCT-------------------------------------------------------------
-------------------AATTGGACTTGGGTATGTCCGTAGTTCACCTACACTCGCACCTTTCCTCCAGCCT------
------------------------GAGCGAAGCCCATGACATAGACAGCAGCAGTGCCACGACGTCGCTTGGTATCGTGC
CGCGATTTCCCTTCCATTAAACGCGCATTTGACAATGAATCGGCAATCAATTAACTAACCCCTTTGACCACAGGCTTGCA
AGTAGGAGTGGTTGATTTTATCCGCTTATAATTCTTCCCCGACAGAGTCTGCTTATACTGCTTAAACCATACCACAAGCA
ACAGTTGCGCACGACGAGCATCAGTGGCTCAATCGCCCCCGGGCTTCGTCCCCATTGTCACCTCTCCCCCTCCACCGCGG
TGGCCATTCCATCCTTCACTACCGCCGCCGCCGTCCAATGCTAGGCCATCGTCTACCCAAGGCAGGATACTGGCCGGCCT
CCTCATCGGCGTCGTGGCGTGCTTGATCGTGTTCACCGCCGTGTGCACCCTCTGCAGGGAGTACCGCGACCGCCGCGCTC
GAGCCGCGGCCGCCGCTTGGCGGTGGCCCGTGCCGGAACGCAATGGC------------GTGCGCGTCGTTGGCGAGCGG
CAGCTTGGCCGGGCCTACGCCGCCAGCCCCACGGCCGGCCTCCCGGCGTTCACGTACAGCCCGTCCGTGAAGCGCAACAT
GACGGGCGGCGGGGAGGAGGAGGCGGCGACGTGCTCGGTGTGCCTCGGCGCGCTGCAGCTCGGCGAGACGGTGCGGCTGC
TGCCGGCGTGCCTGCACATGTACCACGCGGAGTGCATCGACCCCTGGCTGGACG--------------------------
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---------------CGCACTCGACGTGCCCGGTCTGCCGCTCCGACACCGG---------------------CCCGGCC
GCGGGCGTCGGCCGGCCACCGTCTGTTTAGGTTTT-----TCCGTGGAGAGGTGTAT-----------------------
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>SNPs
SS--S-S--SS----------------------------------S----------------------------------
--S------S-S---S--------S----S------S----------SSSS-SS-S------------------SS-SS-
S-S--SSSSS-S--SS-S-S---SSSSS-SSSSS-SSS-SSSS--SSSS-SSS-S--S-SSS-SS----S-SSSSS-SS-
S--SSS-SS-SSSSSS--SSSSS-SSS-S-S-SS-SSSS-SSSS-SSS-SSSSSSSSSSS--S-SSSSSSSS-SS-SSSS
-SSSSS--SSSS-SSSSSSSSS-SSSSSSS--SSSSS-SS-SSSSSS-SSSSSSSSS-SS-SS-SSSSSSSSSSSSSS--
SSSSSSSSSS-SSSS--SSS-SS-SSSSSSSSSSSSS-SS-SSS--S-SS-SS----SSSS-SSSSSSS-SSS-SSSSSS
SSS--SS-SSSSSSSSS-S-SSS------SSSSS---SS-SSSSS-SS-S-SSSSSSS-SSS-S-S-SSSSSSSSSSSS-
SSSSSSSSSSS--SSSSSS-SSS---S-S-SSSS-S-SS--SSSSSS-S-SSS-SSSS--S--SS-SS-SSS-SS-SSS-
S---S-SS--------S----S----------------------------------------------------------
--S-------------------------------------SSSSS-----------------------------------
----SSS-SS----------------------------------------S-----------------------S-----
-----------------------------------------S--------------------------------------
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----------------------------S-------S-----S-------------------------------------
----------------------------S---------------------------------------------------
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-------------------------------------------S------------------------------------
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--------------------------S---------SS---------------------------SSSS----------S
---S------S--S-------S---SSSS------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_615
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-----------------------------------ACCGAAGCAAGGCCCTTTAA-------------------------
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>reverse_2652
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-----------CAAAACGGACACACACGGTC-------------------------------------------------
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