>input_sequence_79328
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--------------------------------------------------------ATGAAGAAAGGTGCTCTCGCTCTC
TTCCTCATCCTCCTC---ACCTTTGCTTCCCATGGCATATGGTGTGAAGCAGCTCGGAGAGGCACCATGGCTGATGCAGC
TCATCATCATCTGAGGCCTCATCCCCAGGTGCAGGGATTGCATGGTCAGTAGTTTGTGTACATC-ATCCCCTATTTGCTC
TCAACTTTCTTGATATTTAAACT---TCACC-------------------CTTACAAAAGTATTCCTGGAATTGCCGCTT
ACTTT-CCAGAAACCCAAGGCAGGAGGCTCCTGGGGA---------------AGCTGGAGCACATGGCAGGTGGTGGCCC
CGGCGGTGGAGCAAGTGGCGGCGGGAGGAAC------ACCGGTGGCGGTGCGGCGAACACGAGGCCGCACAATACCAAGA
ACGGCGGCGCTGTGGCCCTGCCGGAACCGGTGACCTCCGTTCTGGCACTGGTCTTCAGCACTACCATTCTTCTCTCGGTG
CTCAGCTTCTAA--------------------------------------------------------------------
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>chr7A_1_TraesCS7A01G411600
AAAATACGACACCAGACTATTAAAACTAACAAATTGACAGCACCAATTCCCAGAGGTGTCTTTCCATCTAGTACATCTTA
TGCAACACGAAAAGAAATACTCCTTAGTAATAGAAGGTGGTTTTGTAGCACAGTAATAGAATCCACTAAC------CTAT
GAGTGCCTTTCTGCGTCTCAAATCTGCCCTGAAAAGAGGAGGGCACTACCTTTCCAGTTAAAA-----------------
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------------------AATTTCACAAATGCGTGATATTTTTTTG--TCGATACAGCTGTTGTCCTTGCTATTTTGTAC
TGAAATAA-CTGTTCTTCTGAAGAAAATGTCACATGTGAAACTTGGGCTCAAAGGACCACTCACAGTTCGGCTAAAACGA
CATCACAGGAAGCCAAAGATCACATCGTATATATCACCTTCTGATCGTACATTCCTTTCGTGTAGTCACTAACAAAAAGA
AAAGAGATGAGACAACCAATTTCAATGGAATTATACGCATCCAGCTTATTCGCGAAAAAAGAGAACGAATTTCAGGATTT
TTCACATTACAGCCTGCCCGTGGTCTCAAAATCATGTACTCCTAGGCAACAGTTCCCTACAAAAAATCTAGTACTAGGCC
ATAGCTGGCAAATCTTGAAGGAGCATCAGGGAATCTCTGTGTGCCACCACATGTGCCCCTTGTGGTGGC-TTTTTGCTTT
GCACCCTCTTTATCCCCCAGCAGAAACATCAGTGATGCCAAGTAGCACTGTAACAAAAGCATCTGATACTGTTGCATGTT
TTGGAGGTGGTGCTGCTAACCAGGAAGATTATCGGAGAGTACTCATCCTGATTCTGTGAGATATC-AAAGGAGTGAGAAA
GGCACA-GCACAGAGCACCTC--CACCTCCCAACAGAGTGTCTGTCACAGAAAGAACAAAGCTGAACTGGTGCCAACATG
CACT-TAACTTGTGGAGTAGCTATC-----------------------TCCAGCAGTTAAAAGAC-----GAGCCTCCGC
A-------CACACTCCACATCGGTGTTTCTCTGTTGGCAACCAA-----------GATGAAGAAAGGTGCTCTCGCTCTC
TTCCTCATCCTCCTC---ACCTTTGCTTCCCATGGCATATGGTGTGAAGCAGCTCGGAGAGGCACCATGGCTGATGCAGC
TCATCATCATCTGAGGCCTCATCCCCAGGTGCAGGGATTGCATGGTCAGTAGTTTGTGTACATC-ATCCCCTATTTGCTC
TCAACTTTCTTGATATTTAAACT---TCACC-------------------CTTACAAAAGTATTCCTGGAATTGCCGCTT
ACTTT-CCAGAAACCCAAGGCAGGAGGCTCCTGGGGA---------------AGCTGGAGCACATGGCAGGTGGTGGCCC
CGGCGGTGGAGCAAGTGGCGGCGGGAGGAAC------ACCGGTGGCGGTGCGGCGAACACGAGGCCGCACAATACCAAGA
ACGGCGGCGCTGTGGCCCTGCCGGAACCGGTGACCTCCGTTCTGGCACTGGTCTTCAGCACTACCATTCTTCTCTCGGTG
CTCAGCTTCTAAAGTACGGATCTTGATCCGGGTGG--TACTGCTAGTATCTGTGTAGTGTTGCAGTTTCAGAAATTGTTT
GCCTA--ACGTTTGTGGGTATCGCA--------CTAATATGTTTACCTAA-------------------TTTGTGCTTCT
TAAGTTCTTGAATTATCAAGCTGCTATGTTTGGTCAGCAGGTACCAGATTATCCTGCTATACGGGAAAATATAAGTATGT
ACACCAACC-ATCGACAATATGCG-TGGATAAAATGGAATTCAGACATTGCATACACTAAAATGCCGTATGTTCCTGGGC
ATCCATGTATTTCATCTAATTTTGATTTAAATAAGTGAATATTTTCTTTGGAGGCCGAGCTCCATGGAGCTCGGTTTTGA
AAAATTCAAAATTCATATTTTCTACATTTCAAAAAATTCTAAAAAAA-CAAAGATATACATGAAGGCATAACACACATGT
GTGTAAACTTTCAGGGCAAAGTACGTTGAAATGAGGGCGGTGCAAAAAAG--ACAAATCTGAGGCTTTTTAACACAAGAC
ACTATTCATCCTCCCAGGCCATGAATTTATCTTTTTTATACAGGTCCCATTTCAATGTTTTTCATCCTGAATTTTACACA
CATACACATAACATCCTTGTTTACTTTCAC-ATTTTTTTCAAAATTTTTTGAAACCAAAAGAATTGAATTTTGA--TTTT
TTTTCAAAAGAAGGCCTCCATGGAGGCTGAGAGGCAAACGTTCGTTCTCTTCAATAAGACATTTTG--------------
-------------------TTAGTACTTGTAATTTGCACACGGAGGACAAAATTATCTTCAGTCAGAGATGCCATTTGGA
AGCAAAACTGAACATAATCTTGTTACTATATAATCCTACGAGTATGAAATCTGGATGTTGATTTTTTTTTTTTTGAATTT
ACTATTCATCTGAGGTGCACCAAACTGTTGGAATTAGGGCTTTAACCCATTTGTTATATCCAATAAAGGTTTTAAATATA
TCAACATCCAGATTTCATACTCGTAGGATTATATAGTAACAAGA
>chr7D_1
AAAATATGACACCAGACTATCCAAACTAACAAATTGACAAGACCAATA-CCAGTGGTGCCTTTCCA--TAGTACATCTTA
TGCAACAGGAAAAGAAATACTCCTAAGTAATAGAAGGTGGTTTTGTAGCACAGTAATAGAATCCACTCAT------CTAT
GAGTGCCTTTCTGCGTCTCAAATCTGCCCTGAAAAGAGGAGGACAATACCTCTCCAGTTTAAT-----------------
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------------------TTTTTCAC-AATGCGTGATTTTTTTTATT---GATACAGCTGTTGTCCTTGCTATTTTGTAC
TGATAT-A-CTGTTCTTCTGCAGAAAATGTCA--------ACTTGGGCTCAAAGGACCACTCACAGTTCGGCTAAAACGA
CATCACAGAAAGCCAAAGATCACATCGTATATATCACCTTCTGATCGTACATTCCTTTCGTGTAGTCACTAACAAAAAGA
AAAGAGATGAGACAACCAATTTCAATGGAATTATACGCATCCTGCGTATTCGCGAAAAAAGAGAACGAATTTCTTGATTT
TCCACATTACAGCCTGCCCGTGGCCTCAAAATCATGTACTCCTAGGCAACAGTTTCCTCCAAAAAGTCTAGTACTAGGCC
ATAGCTGGCAAATCTTGAAGGAGCACCAGGGAATCTCTGCGTGCCACCACATGTGCTCCTTGCGGTGGCTTTTTTGCTTT
GCACCCTCT----------------------------------------GTAACAAAAGCATTTGATACTGTTGCATGTT
TTGGAGGTGGTGCTGCT-ACCAGCAGGATTATCAGAGAGCATTAATCCTGATCTTGTGAGATATC-AAAGGAGTGAAAAA
GGCGCA-GCACAGAGCGCATC--CACCTCCCAACAGAGTGTCTGTCACAGAAAGAACAAAGCTGAACTGGTGCCAACATG
CACT-TAACTTGTGGAGTAGCTATC-----------------------TCCAGCAGTTAAAAGAC-----GAGCCTCCGC
AGTCCGCACACACTCCACATCGGAGTTTCTCTGTTTGCAACCAAGTCCGCCCCAAGATGAAGAAAGGTGCTCACGCTCTC
TTCCTCCTCCTCCTCCTCACCTTTGCTTCCCATGGCATATGGTGCGAAGCAGCTCGGACAGGAACCATGGCTGATGCAGC
TCGTCATCATCTGAGGCCTCATCTCCAGGTGCAGGGATTGCATGGTCAGTAGTTTGTGTACACC-ATCTCCTGTTTGCTC
TCAACTTTCTTGATATTTAAAGG---TCACCCTTGCCATGAAGCCAATCTCTTACAAAAGTATTCCTGGAATTGCCGCTT
ACAAT-CCAGAAACCCAAGGCAGGAGGCTCCTGGGGA---------------AGCTCGAGCACATGGCAGGCGGTGGCCC
CGGCGGTGGAGCAAGTGGCGGCGGGAGGAAC------ACCGGTGGCGGTGCGGCGAACACGAGGCCGCACAATACCAAGA
ACGGCGGCGCTGTGGCGCTGCCGGACCCGGTGACCTTCGTTCTGGCACTAGTCTTCAGCGCTACCATTCTTCTCTCGGTG
CTCAGCTTCTAAAGTACT-----TGATCCGGGTGGTATACTGCTAGTATCTGTGTAGCGTTGCAGTTTCAGAAATTGTTT
GCCTA--ACATTTGTGGGTATCGGA--------CTGATATGTTTACCTAA-------------------TGTGTGCTTCG
TAAGTTCTTGAATTATCAAGCTGCTATATTTGGTCAGCAGGTACCAGATTATCCTGCTATACGGGAAAATATAAGTATGT
ACACCAAGCAATCGACAATATGCG-CGGATAAAATGGAATTCAGACATTGCATGCACTAAAATGCCGTATGTTCCTGGGC
ATCCATGTATTTCATCTAATTTTGATTTAAATAAGCGAATATTTTCTTTGGAGGCCGAGCTCCATGGAGCTCGGTTTTGA
AAATTTCAAATTTCATATTTTCTACATTTCAAAAAATTGTAAAAAAAACAAAGATATACCTGCAGGCATAACACACATGT
GTGTAAAATTTTAGGGCAAAATACGTTGAAATGAGGGCTGTGCAAAAAAAAAACAAATCTGAGGCTTTTTAACACATGAT
ACTATTCATCCTCCTAGACCATGAATTTATCTTTTTTATACAGGTCTCATTTCAATGTTTTTCATCTTGAATTTTACACA
CATACACATAACATCCTTGTTTACTTCCATATTTTTTTTCAAATTTTTTTGAAACCAAAAAATTTGAATTTTGATTTTTT
TTTTCAAAAGAAGGCCTCCATGGAGGCTGAGAGGCAAACGTTCGTTCTCTTCAATAAGACATTTTG--------------
-------------------TTAGTACTTGTAATTTGCACACGGAGGACAAAATTATCTTCAGTCAGAGATGCCATTTGGA
AGCAAAACTGAACACAATCTTGTTACTATATAATCCTACGAGTATGAAATCTGGATGTTGATATA-TTTGTTTTGAATTT
ACTGTTCATCTAGGGTGCACCAAACTGTTGGAATTAGGGCTTTAACCCATTTGTTATATCCAATAA--------------
--------------------------------------------
>chr7B_1
AAAATATGACACCAGACTATCAAAACTAACAAATTGACAGCACCA---CCCAGTGGTGCCTTTCCATCTAGTACATCTTA
TGCAACAGGAAAAGAAATACTCCTA-GTAATAGAAGGTGGTTTTGTAGCGCAGCAATAGAATCCACTCATCTATGACTAT
GAGTGCCTTTCTGCGTCTCAAATCTGCCCTGAAAAGAGGAGGGCACTACCTTTCCAGTTTTTTTTTTTTTGAAACGAGGC
AAAAGACTTGCCCTTTCATTAAATAAGGGAGAAGGTTTTAGACAGAAGCCGCAAGCGGCAGACAAAGGAAAATTACTCTC
GCGGCATTACAATACTCAAGTGCTTGGCACCCGCCAAAACCCAAAGCGACGCCTCATGTTTGATGTTGTTGATGATGACC
ACCGATGGAACCGCCACGTTGCGAAAGACTCTAGCATTTCTCTCAGTCCAAACCTCCCAAGAGATGAGCATCATCAATGA
GGCTAGGGCTTTGGGAGAGCCGAGACGAATCTGAAGGTTGCTGTCCCACCATTCTTTGACCGAAACGCTCACCGTCCATG
TAGTAGTAGAGATGTGGTGCATTCCAAGCCACGGAAGAATGTCATTCCAAATGCGCAATGTGAAGCGGCACTGGAATAGT
AGGTGAGCAGCGGACTCCTGTGCTTGCTTACAAAGGGGACACAAGCCGCAGTTGGGCCAGCCACGACGGATCAAGCGGTC
TGATGTCCATATTCTGTTTTGAAGAACGAGCCAAGCAAAGAATTTGCACCTCGGGGGAGCCCAAGCCCTCCACACAGACT
TGACAAGATCAGAGGATATGAGACCTTCAAATTGTGCCTTGTATGCCGATGAAGCAGAATAAATCCCATCCTTAGTGAAC
TTCCAAGTAATGGAGTCTTCCACATCTTCCTCAAGGGCCACCGATGATAATTTTTCCCAAAGGTCAGCAAACTGCTCGAT
ATGCGCGATGGACAAACCATTGGTGCCATCAATATTAGTGATCCACAGGTTGTTGGTCATGGCTTGCTGGACCAATGGGT
TCTTCTTGCGAGAAAGGTGAAAGAGGTCCGGCGCGATGTCACGGGGGCGCAAGCCATTGAGCCACGACGAATTCCAGAAT
TGCGCCGTTCATCCGTTGCCAACAAGGACCGTAGTGGCAGCCGCAAAGAAGTGTCGATCATCCTCCGTGCATGGCGTCCC
CATGCCTATCCATGGCTTGCTCTTGTCAGTCCATTCAAACCATAGCCGTCGAAGCCGCAGAGCCTTGGCGAACTTATCCA
GGTTAAGCACTCCGAGCCCACCCTTGTCCTTGGGCTTACAGACGAGCTCCCAGTTAACCTTGCATTTTCCTCCAGACACC
TTGTCTGAGCCCGCCCAAAGATATGCACGGCGAATATTATCGATTTTCTTGAGGACCTCCACTGGGATGTCGAGCGGCGT
GAGATGGTAGATAGCAATGGCAGTTAGGACGGCCTTAACAAGAACCACACGGCCAGCAGAGGCCACATGTGTTCCCTCCA
GGGAGGGAGCTTGCCCGCAATTTTATCTTCAAGGTACTGGAAGTGGATTCGCTTGAGGCGCTTGACGGATAACGGAAGCC
CAAGGTAGCGCATCGGGAACGAGGCGCGCACCGCCGGAAAATCATGAAGAACATCGTCAAGGTTGATGTGCTTAACCTGG
ATAAGTTCTCCAGTTTAATTTTTCAC-AATGCGTGATATTTTTTTTTATCGATACAGCTGTTGTCCTTGCTATTTTGTAC
TGATAT-AACTGTTCTTCTGAAGAAAATGTCACGTCTGAAACTTGGGCTCAAAGGACCACTCACAGTTCGGCTAAAACGA
CATCACAGAAAGCCAAAGATCACATCGTATATATCACCTTCTGATCGTACATTCCTTTCGTGTAGTCACTAACAAAAAGA
AAAGAGATGAGAGAACCAATTTCAATGGAATGATATGCATCCTGTGTATTCGCCAAAAAAGATAACGAATTTCAGGATTT
TTCACATTACAGCCTGCCCGTGGTCCCAAAATCATGTACTCCTAGGCAACAGTTCCCTCCAAAAAATCTACTACCAGGCC
ATAGCTGGCAAATCTTCAAGGAGCATCAGGGAATCTCTGTGTGCCACCACATGTGCTCCTTGCGGTGGCTTTTTTGCTTT
GCACCCTCTTTATCCCCCAGCAGAAACATCAGTGATGCCAAGTAGCACTGTAACAAAAGCATTTGATACTGTTGCATGTT
TTGGAGGTGGTGCTGCTAACCAGGAAGGTTATCAGAGAGTATTAATCCTGATTTTGTGAAATGTCAAAAGGAGTGAGAAA
GGCACAAGCACAGAGCGTCTC--CACCTCCCAACAGAGTGTCTGTCACAGAAAGAACAAAGCTGAACTGGTACCAACATG
CACT-TAACTTGTGGAGTAGCTATC-----------------------TCCAGCAGTTAAAAGAC-----GAGCCTCC--
-----GCACACACTCCACATCGGAGTTTCTCTGTTGGCAACCAAGTCCGCCCCAAGATGAAGAAAGGTGCTCTCGCTCTC
TTCCTCATCCTCCTC---ACCTTTGCTTTCCATGGCATATGGTGTGAAGCAGCTCGGAGAGGCACCATGCCTGATGCAGC
TCATCATCATCTGAGGCCTCATCTCCAGGTGCAGAGATTGCATGGTCAGTAGTTTGTGTACATC-ATCCCCTATTTGCTC
TAAACTTTCTTGATATTTAAAGT---TCACC-------------------CTTACAAAAGTATTCCTGGAATTGCCGCTT
ACTTT-CCAGAAACCCAAGGCAGGAGGCTCCTGGGGA---------------AGCTGGAGCACATGGCAGGTGGTGGCCC
CGGCGGTGGAGCAAGTGGCGGCGGGAGGAAC------ACCGGTGGCGGTGCGGCGAACACGAGGCCGCACAATACCAAGA
ACGGCGGCGCTGTGGCGCTGCCGGACCCGGTGACCTCCGTTCTGGCACTGGTCTTCAGCACTACCATTCTTCTCTCGGTG
CTCAGCTTCTAAAGTACTGATCTTGCTCCGGGTGG--TACTGCTAGTATCTCTGTAGTGTTGCAGTTTCAGAAATTGTTT
GCCTA--ACTTTTGTCGGTATCGGAGTATCGGCCTGATATGTTTACCTAA-------------------TGTGTGCTTCG
TAAGTTCTTGAATTATCAA---GCTACGTTTAGTCAGCAGGTACCAGATTATCCTGCTATACGGGAAAATATAAGTATGT
ACACCAAGCAATCCACAATATACG-CGGATAAAATGGAATTCAGACACTGCATACACTAAAATGCCGTATGTTCCTGGGC
ATCCATGTATTTGCAGTCTGCAATTTTCAAACCATTTCCATTGGCATT--------------------------------
---TTTCAAAGTCTAGACTTTCAAAGTTTGCAAAATTTGCAGTGGCATTTTTCAAAGTTTGAAAATTGCAGCGGCGTTTC
GAGTAATCGTCAGAATTCGAGTGGCATTTATCCAGTGGCGGAGCTATGTGTGCTCCTGGGGTGGCCGTGGCCCCCCCAGC
CTTAGCAAAAAGTATGAAGG------------------------------------------------------------
------------------------------AATTTTTTTTAAAGGGTTTAGATGAGGATAAATTTAGCATTTGGCCCCCT
CAGGTGTGTGTGTTTTATCATTTTCCCCCCCTGAACTTCTTCCCTAGCTCCGCCACTGCATTTATCCAATTAACCCGTAA
TTTAAATAAGGCACTGTGTTTAGTACTTGTAATTTGCACACGGAGGACAAAATATCCCCAGTT-AGGGATGCCATTCGGA
AGCAAAACCGAACACAATCTTGTCA--ATATAAGTCTCCGAGTATGAAATTTGGATGTTAGTATA-TTTGTTTTGAATTT
ACTGTCCATCTGGGGTGCACCAAACCGTTGGAATTAGGGCTTTAACCCAATTGTTATATTCAGTAA--------------
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>chr7B_668
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------------------------------------------------------------------------TTCGCTTT
GCCCCCTCTTG--CCCCCAGCGGAAACATCAGTGATGCCAGAAAGCCCCGAAACAAAAGTTTTTGAAACTGTTGCTTGTT
TTGGGGGTGGTGCTAAT---CAGCAAGATTATGGGAGAGTACTAACCCTGATTTTGTGAGCTAAC-AAGAGGGTGAGAAA
GGCACA-GCTCAAGGCACCTCTCCAGCTCAAGGCACAGTGTCTGCCACAGAAAGAACAAAGCTGAACTGTTGCCACCATG
CACAATAGCTTGTGGAGTGATCTTATCTTAGCTAGCTGCTCTCCAGCATCCAGGGGTTAAAAGACTAGACGAGCCTCC--
-----GCACACACTCCACATCGGAGTTCCTCTGTTGGGCACCGAGTCTATCTCACGATGAAGATAGATGCCCTCGCTCTC
TTCCTCCTCCTCCTCG---CCTTCGCATCCCATGGCACATGGTGTGAAGCAGCTCCGAGAAGGACCATGGCCGGTGCAGC
TCTCCAGCCC------------------------------CATGGTTAGTAGTTTGTGTGCATCAATCTCCTCTTTGCTC
TCTACTCTCTTCATATTTCTTCAGGTTCAGCCTTGCCATGAGGCCAGTCTCTTACAAAAGCGTTCCTGGAACTGCCGCTT
ACTTTTCCAGAAATCCAAGGCAAGAGGCTCCTGGAGATCGTGAGCCGCAGGAAGCTTGGGCACACGGGAGGCCGCGGCTC
CGGCGGTGGAGCGAGCGGTGCCGGGAGACACACCGGTACCGGTGGCGGTGCGGCGAACACGAGGCCGCACAGCACCAAGA
ACGGCGGCGCTGTGGCGCTGCCGGCTCTGGTGACCTCCGCTCTGGCACTGGTTTTCACCACTGTCATTCTTCTCTCGGCG
CTCAGCTTCTAAAGTACTGATCTTGTCACCGGTGG--TAGTGCTAGTATCTGTGTAGTGCTGCAGTTTCAGAAATTGTTT
GCCTATAATGTTTGTTGATATCGTG--------CTGATATGTTGTTTACTGGCTAGTATTTATCATGTCTGTGTGCTTCG
TAAATTCTTGAATTACCAA---GCTATGTTTAGTCAGATAGTACCGGATTATCGTCCTATAACAGTCTGTATAAGTATGT
ACACCAAGGAATCGACAGTATTGTACGGATCAATTGGAATTCAGACATTGCATATAATGAAATGACATATCCT----GGC
ATCCATGTATTTCAT-----------------------------------------------------------------
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>SNPs
------S-------------S--------------------------S-----S----S---------------------
-------S----------------S------------------------------------------S-S----------
-----------------------------------------------------------S--S-----------------
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------------------SS------S------------------S----------------------------------
---S--S--------------------------S-S--------------------------------------------
--------S-----------------------------------------------------------------------
------------------------------------------S--S----------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------S-----S-----------------
--------------------------------------------------------------S-----------------
-------------------------------------------S---------S--------------------------
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-----------------------S--------------------------------------------------------
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-----------------------S--------------------------------------------------------
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----------------S--------S------------------------------------------------------
-----------------S--------------------------------------------------------------
-----------------------S-----------S----------------------------------S--------S
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-------S-----------------S------------------------------------------------------
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---S------S---------------------------S--------------------S--------------------
-----------S--------------------------S-------------------------------------S---
--------------S--S----------------------------S-------------------S-------------
--------------------------S--S-------------S----------------S-S-----------------
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--------------S-----------------------------------------------S-SS---S----------
---S--------S-----------------------------------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_54
----------------------------------TGACAGCACCAATTCCCAGA--------------------------
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>reverse_3288
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-------CCATCGACAATATGCGTGGA-----------------------------------------------------
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