>input_sequence_79324
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----------------------------------------------------------------ATGGACGTCTCAGCCA
CCGGAGCAGGCGCGAAGGCCAAGAAGGGAGCCGCAGGGCGCAAGGCAGGCGGCCCCAGGAAGAAGTCGGTGTCGAGGTCC
GTCAAGGCCGGGCTCCAGTTCCCGGTTGGCCGCATCGGGCG---------------------------------------
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------------GTACCTCAAGAAGGGCCGCTACGCGCAGCGCGTCGGCACGGGCGCCCCCGTCTACCTCGCGGCCGTCC
TCGAGTACCTCGCCGCCGAGCTGCTGGAGCTCGCCGGCAACGCCGCCAAGGACAACAAGAAGAGCCGCATCATCCCGAGG
CACCTGCTGCTCGCCGTCAGGAACGACGAGGAGCTCGGGAAGCTGCTGGCCGGCGTCACCATCGCGCACGGCGGCGTCGT
GCCCAAGATCAACCCGGTGCTGCTCCCCAAGCGGACGGCGGAGAAGGTGCCCAAGGAGGGCAAGTCGCCCAAGAAGGCCG
CCAAGTCCCCCAAGAAGGCTTAG---------------------------------------------------------
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>chr7A_1_TraesCS7A01G147200
ATATACAACAAAAATGCACTTGTGCCAATGCCATAAGAAAGCTGACACTTCATATATAAAAAAAGGCACTTATGCCAAAG
GATGTGTAGCTGCTACCATGTGTGCGTAGCTACCACCATGCATAGGGAATCGTCTCTCTTTGACTTATACATCAAGTTGT
CCATCAATCGAATCATCCAACGCATGATCTGCATGATCTCCTTACCGATAAACCTACCTGTTCAATCTTCTCTGTTAATG
CACACCCGT-TCTTTCAAACAAATTTGCATCCATTTATGTGGAGATTTTTTTTCAAGAGTACGCCAAAGAAGTACATTAG
TTTTATAGAAGACAGAAAATATTTACAAGAGATTACAACAAGGTGTAGATCACCACAGACCGGCAACCCCACCAACTCCA
CTCCGAACCCATCTAGCCCACTACTCGCAATATCTTAGCACTCCGAACCTCCCTGCTAAAGT---------------CTC
GAAAATGAGTTGGACCATGCCCCACACATTGCATATGGTGTCTGTGCCAAATATGCGCCCGTTCTGTTGCTTCCATAGCG
TCCGTTCCGTTGCGGAGATC-GATCTCTATCATATACTTTTCGTTGAGCTTGATCTCTATCATATCTGAGTGACGCTTGG
CAGTTGCCACCTACCCACCCACGCCGCGAAAATCAGCGCTTGGCTGCCACCCCTTCCCCCGAAATCTCCTCACCGTACGC
GGGAAAACGGAGGCTCAAAGTTCTCCGGCCTCCAAAATCTCCTCGCACCTGATTGGTCCAACCGTGCTTCCCACGGATCG
CTCCTCCCCCGACCGCATCTTGACCGTCCACGCCCTCCCCATCCCACCA-CCCAACCGCCACGCCCACGGATCGACAGGC
GCACCACGGCCGCCGTCCGCACCGTTTAAATACTCCGGCCGTCTCGCCGCATTCCCCACCAGTCCAGAGCTCGCCATCCC
AATCTCTCAGCACCAAACATCTTCTCTTACGCGCCTCGAC------GAGCATCAGCGGCTAGCCATGGACGTCTCAGCCA
CCGGAGCAGGCGCGAAGGCCAAGAAGGGAGCCGCAGGGCGCAAGGCAGGCGGCCCCAGGAAGAAGTCGGTGTCGAGGTCC
GTCAAGGCCGGGCTCCAGTTCCCGGTTGGCCGCATCGGGCG---------------------------------------
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------------GTACCTCAAGAAGGGCCGCTACGCGCAGCGCGTCGGCACGGGCGCCCCCGTCTACCTCGCGGCCGTCC
TCGAGTACCTCGCCGCCGAGCTGCTGGAGCTCGCCGGCAACGCCGCCAAGGACAACAAGAAGAGCCGCATCATCCCGAGG
CACCTGCTGCTCGCCGTCAGGAACGACGAGGAGCTCGGGAAGCTGCTGGCCGGCGTCACCATCGCGCACGGCGGCGTCGT
GCCCAAGATCAACCCGGTGCTGCTCCCCAAGCGGACGGCGGAGAAGGTGCCCAAGGAGGGCAAGTCGCCCAAGAAGGCCG
CCAAGTCCCCCAAGAAGGCTTAGGGAGGCCCGCTGATTTGCGTCAGTATGTAATAAGCTGTTCGCCTAGCGGCATCGATG
TAATTTTTGTTGTTAATGG--AAACATGTCAGACATCTCTCTGACTTTGTTATATTTTGTGCTTTGTTATCTGTTCTTGG
TGCTAGTACTATGGAGGATATTTAAATTTGTGCGGTAGGCTGATTGGAATCTGCTGATTTTGGTATTATGGAGGGCAGCG
TAGCCTGCTCTCGGCACCAAAGTTAGCTTCTCTGCGCTTAGCACGTTGCACGGTACTCGCCATAGCCGGCTCGCCCAAGA
AGGAAGGATCTGGCGGGGGCTGAGGGCAACGAGCCGATTGTTTGGGGAAAGGTCTAATCCTTCTTCTCCTAAGCCTGATT
TTATTATTTGGTTCAACAGAAGCATCTCCACTAGAAGATGTATATGCAAAAATACTAACTATTTTTGCATCTCTGAGGCC
CCAAAGCATCTTAAAAAATACATCTTTGCCTTCTGAAAATGTAAAATACAACACCTCACGATGAAATTTGCATCTATGCC
GACCGGAGATGTAAAAAGGGTAGCCACGTGCTAACTGCCAACTGCCGTTTCTTTTCGTTTTTGTGCGACCGTCGCTCGTG
TGCCTCCTGCCTCTCACCGCCACCATGGCCGACGCCGATGACCTCGCCGCCTTCTGTGACTCCGTCGCCGATGCCCTGAC
CCACCTCGTCACGCCCGCCATCTCCACGCAAACTTTCCCCAATCCGGCCTTCGACACCATGCCGGTGTCTCGGATTTGCC
ACACCCTGGCCGGTCGTCGTCGTGCTGAAGGCACCTGCAAAGAAGCGGCGGGCCTCCAAGCCACGTGGTGGAGGCGTGAA
TCGGCCGGTAGCCGGTTTTACATTTCTTGTTTACATCTTTTATTGGAGTTGTTCTTTTATATCTCCGTTTTGCATCATCT
GTTGGAGTTGGCCTCTTTCTAGAGATGCAAAAGGCACTTTTTGGAGATGTAAATTTTTACATCTC
>chr7B_1
ATATACAACAAAA-TGCACTTGTGCCAATGCCATAATAAAGCCGACACTTCATATAT-AAAAAAGGCACTTATGCCAAAG
GATGTGTAGCTGCCACCACGTGTGCGTAGCTACCACCATGCATGGGAAATCGCCTCTCTTTGACTTATACATCGAATTGT
CCATCAATCGAATCATCCAACACG---------TGATCTCCTTACCGATAAATCTACATGTTCAATCTTCTCTGTTAATG
CACACACATATCTTCCATACAAATTTGCATCCATTGATGC---GATTTTTTTTCAAGAATACGCCAAAGGAGTACACTAG
CTTTATAGAAGATAGAAAATATTTACAAAAGGTTACAACAAGGTGTAGATTACCACGAATCGGCAACCCC----------
------------------CACTACTCGCAATATCTTAGCACTCCGGACCTCCCCGCTAAAGTCCACAAGCGTAAATCCTC
GAAAATGAGTTGGACCATGCCCCACACATCGCATATGGTGCCTGTGCCCAATACGCGTCCGTTCCGTTGCTTCCATACCG
TCCGTTCCGTTGTGGAGAATTGATCTCTATCATAT--TTTTCGTTGAGCTTGATCTCTATCATATCTGAGTGACGCTTGG
CAGTTGCTACCTACCCACCCACGCCGCGAAATTCAGCGCTTGGCTGCCACCCCTTCCCCCAAAATCTCCTCACCGTACGC
GGGAAAACGGAGGCGCAAAATTCTCCGGCCTCCAAAATCCCCTCGCACCTGATTGGTCCAACCGTGCTTCCCACGGATCG
CTCCTCCCA-GACCGCATCGAGACCGTCCACGCCCTCCCCATCCCACCA-CCCAACGACCGCCCCCACGGATCGACAGGC
GCACCATGGCCGCCGTCCGCACCGTTTGAATACTCTGGCCGTCTCGCCGCATTTCCCACCAGTCCAGAGCTCGCCATCCC
AATCTCTCAGCACCAAACATCTTCTCTTCCGCGCCTCGAC------GAGCATCAGCGGCTAGCCATGGACGTCTCAGCCA
CCGGAGCAGGCGCGAAGGCCAAGAAGGGCGCCGCAGGGCGCAAGGCCGGCGGCCCAAGGAAGAAGTCCGTGTCGAGGTCC
GTCAAGGCCAGGCTCCAGTTCCCGGTCGGCCGCATCGGGCGCCTGGTTTTTAATTTCAGTTTCAGAAAAATTTCAGCACC
AACCAAAATCACTGAAATTCAATGAATTTCAGTGATTTCAGTTTCCATTTCAGCCAAATGACCGAAATATTCACTTGAAT
TCAAATTTTTTTTAATTTTAAAAAATATTTTGAAATATATTGGAATTGTTGTGCTATATTGAAATTGCTGAAATATTTTG
ACCGAAATTTAATATTTCAGTGTCTGCTGAAATTACTGAAATTCAGTGGATTTCATCGAAATCCCACTGAAAGTGAAAAC
CATGATCGGGCGGTACCTCAAGAAGGGCCGGTACGCGCAGCGCATCGGTACCGGAGCTCCCGTCTACCTCTCGGCCGTCC
TCGAGTACCTCGCCGTCGAGGTGCTGGAGCTCGCCGGCAACGCCGCCAAGGACAACAAGAAGAGCCGCATCATCCCGAGG
CACCTGCTGCTCGCCGTGAGGAACGACGAGGAGCTCGGGAAGCTGCTGGCAGGCGTCACCATCGCGCATGGCGGCGTGGT
GCCCAAGATCAACCCGGTGCTGCTCCCCAAGCGGACGGCGGAGAAGGCGCCCAAGGAGGGCAAGTCGCCCAAGAAGGCCG
CCAAGTCCCCCAAGAAGGCTTAGGGAGGCCCGCTGATTTGTGTCAGTATGTAATAAGCTGTTCGCCTAGCGGCATCGATG
TAATGTTTGTTGTTAATGAAAAAAAATGTCAGAAATCTCTGACTTTG---------------------------------
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>chr4B_702
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------------------------------------------------------------------------------GC
GGGAAACCTGTGG-GCAGAAATTTCCGGGCTCCAGAATTTCCTCGCACCTGATTCGTCCAACCGTGCCTCCCACGGATCG
CACCTCCCA-AACCGCATCGCGGCCGTCCAAGGCCCACCCGATCCAACGGCCCAACGCCCGCGTCCGCGGATCGACGGGC
CCACCA---CCGCCCTCCGCGCCGTTTAAATAACCCCGCCCCTCCGCAGTTTCCAT--------CACAGCTCTCAATCCC
AATCTCCCATCACAAAACCAATCCTCCTCCGCGCCCCGATCCCCAAGAGCATCACCTGCAAGCAATGGACGTCTCAGGCA
CCGGAGCTGGCGCCAAGGGCAAGAAGGGCGCGGCCGGGCGCAAGGCCGGCGGCCCCAGGAAGAAGTCGGTGACGCGCTCC
GTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCG---------------------------------------
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------------CTACCTCAAGAAGGGCCGCTACGCCCAGCGCGTCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCC
TCGAGTACCTCGCCGCCGAGCTGCTGGAGCTCGCCGGAAACGCCGCCAAGGACAACAAGAAGAGCCGCATCATCCCGCGC
CACCTGCTGCTCGCTGTCAGGAACGACGAGGAGCTCGGAAAGCTGCTGGCCGGCGTCACCATCGCGCACGGTGGCGTGAT
CCCCAAGATCAACCCGGTGCTCCTCCCCAAGAGGACCGCGGAGAAGGAGGGCAAGGAGCCCAAGTCTCCTAAGAAGACGA
CCAAGTCCCCCAAGAAG---------------------------------------------------------------
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>chr7B_938
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---------------------------------------------------------------------------ATCCC
AAATCACCAAC-CAAATCCCCTCCTCTCCCGCGTCCCGAC------GAGCACCAGCCACCAGACATGGACGCCTCAGCCA
CCGGAGCCGGAGCGAAGGCGAAGAAGGGCGCGGCGGGGCGCAAGGCTGGCGGCCCCAGGAAGAAGTCGGTGACGCGGTCC
GTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCG---------------------------------------
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------------CTACCTCAAGAATGGCCGGTACGCGAAGCGCGTAGGCACGGGCGCCCCCGTCTACCTCGCCGCCGTCC
TCGAGTACCTGGCCGCCGAGCTGCTGGAGCTCGCCGGGAACGCCGCCAAGGACAACAAGAAGTCCCGCATCGTGCCCAGG
CACCTGCTGCTGGCCGTGAGGAACGACCAGGAGCTCGGGAGGCTGCTGGCCGGCGTGACCATCGCGCACGGCGGCGTTCT
GCCCAACATCAACCCGGTGCTGCTGCCCAAGAGGACGGCGGAGAAGGAGCCCAAGGAGGGCAAGTCGCCCAAGAAGACCG
CCAAGTCCCCCAAGAAGGC-------------------------------------------------------------
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>chr7B_963
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--------------------CTCCTCTCCCGCGGCACGAC------GAGCACCAGCCACCGGACATGGACGCCTCAGCCA
CCGGAGCCGGAGCGAAGGCGAAGAAGGGCGCGGCCGGGCGCAAGGCCGGCGGCCCCAGGAAGAAGTCGGTGACGAGGTCC
GTCAAGGCCGGGCTCCAGTTCCCTGTCGGCCGCATCGGGCG---------------------------------------
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------------CTACCTCAAGAAGGGCCGGTACGCCAAGCGCGTCGGCACGGGCGCCCCCGTCTACCTCGCCGCCGTCC
TCGAGTACCTCGCCGCGGAGCTGCTGGAGCTCGCCGGGAACGCCGCCAAGGACAACAAGAAGTCCCGCATCGTGCCCAGG
CACCTGCTGCTCGCCGTGAGGAATGACCAGGAGCTCGGGAGGCTGCTGGCCGGCGTGACCATCGCGCACGGCGGCGTGCT
GCCCAACATCAACCCGGTGCTGCTGCCCAAGAGGACGGCGGAGAAGGAGCCCAAGGAGGGCAAGTCGCCCAAGAAGACCG
CCAAGTCCCCCAAGAAGGC-------------------------------------------------------------
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>chr7D_963
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--------------------CTCCTCTCCCGCGTCCCGAC------GAGCACCAGCCATCAGACATGGACGCCTCAGCCA
CCGGAGCGGGAGCGAAGGCGAAGAAGGGCGCGGCCGGGCGCAAGGCCGGCGGCCCCAGGAAGAAGTCGGTGACGAGGTCC
GTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCG---------------------------------------
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------------CTACCTCAAGAATGGCCGCTACGCGAAGCGCGTCGGCACGGGCGCCCCCGTCTACCTCGCCGCCGTCC
TGGAGTACCTCGCCGCCGAGCTGCTGGAGCTCGCCGGGAACGCCGCCAAGGACAACAAGAAGTCCCGCATCGTGCCCAGG
CACCTGCTGCTCGCCGTCCGGAACGACCAGGAGCTCGGGAGGCTGCTGGCTGGCGTGACCATCGCGCACGGCGGCGTGCT
GCCCAACATCAACCCGGTGCTGCTGCCCAAGAGGACGGCGGAGAAGGAGCCCAAGGAGGGCAAGTCGCCCAAGAAGGTCG
CCAAGTCCCCCAAGAAGGC-------------------------------------------------------------
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>chr7D_963
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--------------------CTCCTCTCCCGCGTCCCGAC------GAGCACCAGCCACCAGACATGGACGCCTCAGCCA
CCGGAGCCGGAGCGAAGGCGAAGAAGGGCGCGGCCGGGCGCAAGGCCGGCGGCCCCAGGAAGAAGTCGGTGACGCGGTCC
GTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCG---------------------------------------
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------------CTACCTCAAGAACGGCCGTTACGCGAAGCGCGTCGGCACGGGCGCCCCCGTCTACCTCGCCGCCGTCC
TTGAGTACCTCGCCGCCGAACTGCTGGAGCTCGCCGGGAACGCCGCCAAGGACAACAAGAAGTCCCGCATCGTGCCCAGG
CACCTGCTGCTGGCCGTGAGGAACGACCAGGAGCTCGGGAGGCTGCTGGCCGGCGTCACCATCGCGCACGGCGGCGTGCT
GCCCAACATCAACCCCGTGCTGCTGCCCAAGAGGATGGCGGAGAAGGAGCCCAAGGAGGGCAAGTCGCCCAAGAAGACCG
CCAAGTCCCCCAAGAAGGC-------------------------------------------------------------
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>SNPs
-------------S----------------------S-----S--------------S----------------------
-------------S----S------------------------S--S-----S--------------------S-S----
---------------------S-SSSSSSSSSS-------------------S----S----------------------
-----S-S------S--S-----------------S---SSSS---------------S----------S------S---
S-----------S---------------S--S------------------S-----SS-S----------SSSSSSSSSS
SSSSSSSSSSSSSSSSSS---------------------------S-------S--------------------------
-----------------------------S----------S-------S----S---S------S------------S--
------------S-----SS---------------SS-------------------------------------------
-------S-----------------------S----------------------------S-------------------
--------------S----S------------------------------------------------------------
--------SS---------SS-----------------------------------SS--S-------------------
------S-------------------------------------------------------------------------
----------------------------S---------------------------------------------------
----------------------------S-----------------S---------------------------------
--------------------------S-----------------------------------------------------
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-----------------------------------------------------------------------------S--
-----------------------------------------------S--------------------------------
----------------------------------------S---------------------------------------
----S-------------S-----S--------S------SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_417
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-----------------------------------------------------------------------------CCA
CTCCGAACCCATCTAGC---------------------------------------------------------------
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>reverse_2374
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-----------------------------------------------------TTCGTTTTTGTGCGACCGTC-------
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