>input_sequence_79291
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-----------------------------------------------ATGGGTAACTTGGTCTCGCAGTGCGTCACGGGC
GGCGCAGAGCGAGCGAGTCCGCTGGTCGTCCTGCCGGACGGCAGCCAGTTCCGGCTGGAGGAGCACGCCGGCGTGGCCGA
GCTGATGATCGAGGCGCCGGGGCACGTTGCTGTCATAGCGAGGGACGCCGCCAAGGAGCGGCGGCTGCGGGCCCTGGCGG
CCGACGAGTTCCTGCGCGCCGGCGAGGTGTACCTCCTCGTGCCCGCCGGGAGGGCCGGGGCGCGGCTGGGCGGTCAGGAG
GCGGACGCCATCCGCCGGCTGGTGTCCGGCAAGAAGGGGGGCAAGGGCAGGGGCAACAGGTCTGGGAGAAGGATTTTCCC
GGAAGGAGAAGCAGCTAGCACCGAGGGTGGAAAGGAGTCTGCTGAATGTGCGCTGCTTTGTAGGATTAGGCCAAGGCAGT
GGAGGCCCGCCCTTGACACCATCTTCGAGGCTTAG---------------------------------------------
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>chr5A_1_TraesCS5A01G207600
GCTGACG-AAAAAATTCAAAACAAATACTAGAAAAATTCAAAAAAACAA----TTTTTGTGAGGTAGACAATTTGATGCG
TGAGGCCCGCTCCAATTTTTAAATTATTTGGACATCTGAGGAACTCTCAGC-AAAAAGACAAATTAGGGGTTTGTAAAAA
TGTTCACTGTTGATGTACTGTTTTGTTCCGATTTGTCTTTTTTGCTGAGACCTGCTAAAATGCTCAAATGACTTGAAATT
TGGAGCGGGTCTCACGCATCAAATTGTCTACCGCACAATTTT-TTTGGAATATTTTGAATTTGTTTTGATTTTTTTATAA
TTTTTTTCTAACCAGATGCAGATGAGTCTGGACACCAAAACGCCCTACTCCATAAAAAGATATATAAACAACACCAACAC
ATTGGCCATTGTTATGAATTCAACCATCAAAAAGTAATCTCCATAATACCAAAGGGACAATGCTAATATCAACATTATGC
ATGTAGTAAATTAAGCACTCGGCATCAACAGCACGAAGCAATCAAACTGACCCGATCGTCGTGACATACCCAGAGCTCGT
TAAATTAAACTAGCGGTTAAACACGATGTGTTTGTTTGGGTTTGGAGCCGACGGAGACTTCTGACTGGAACAACACCTAC
TCCGA---------------------AGGC----TCTGCACCCGCGGTGTTGACGTGTTCGGCGCTGGGCCGCGCGAAGT
GGATCGTATCAAACACTCCCACTCTCGCT------GCCGCTACGTCCAATCGCACGCGCTCCGT--AGAATAGGCCAGTC
GGCCGGCTGGACCCCATCTC------------------GGTGCAGCTCCGAGCG-GACAAGTCCACCTTCGTCCTGCCTG
CCGCCTTCCTCTCCTCCGGCTATATAGAGCAAATCACCCACCGAGGACAAAT-CATCTCCAGATTCCTTTCACTTGGA--
----TAAACACCAGA-------------------GCTCTTCGTCGACCAACAAGATCGA--TCCAGGCCAAGATTTGGTA
CTGCTCTACGTCGCAGCACGAGCACATCACAGTCCGCGTGCGTATACATGGGTAACTTGGTCTCGCAGTGCGTCACGGGC
GGCGCAGAGCGAGCGAGTCCGCTGGTCGTCCTGCCGGACGGCAGCCAGTTCCGGCTGGAGGAGCACGCCGGCGTGGCCGA
GCTGATGATCGAGGCGCCGGGGCACGTTGCTGTCATAGCGAGGGACGCCGCCAAGGAGCGGCGGCTGCGGGCCCTGGCGG
CCGACGAGTTCCTGCGCGCCGGCGAGGTGTACCTCCTCGTGCCCGCCGGGAGGGCCGGGGCGCGGCTGGGCGGTCAGGAG
GCGGACGCCATCCGCCGGCTGGTGTCCGGCAAGAAGGGGGGCAAGGGCAGGGGCAACAGGTCTGGGAGAAGGATTTTCCC
GGAAGGAGAAGCAGCTAGCACCGAGGGTGGAAAGGAGTCTGCTGAATGTGCGCTGCTTTGTAGGATTAGGCCAAGGCAGT
GGAGGCCCGCCCTTGACACCATCTTCGAGGCTTAGATTGA-------TCATGGCCCCCGTCTCTAGGTTAGAATAGGAA-
-------CATTCATTCGTTTTGTTATTTTTTGTTGAATATTGATCATCCTTCTTTTTCAAGCAAGGAGAGAAGGAATTCG
TTTTGACGTGTAC---TGTCTTGTAAAGCTTTAACTTATTTTGGAGTACAAGGTTGTCAGAGCTAGAAATAG---TAATT
GTCAAACCTAAATGCTACTCATTCTGTG-------------CATACAGATTTGTTGAGAAGTCAAACTTCACAAATTTTG
ATCAAGTGTATAGAGAAAAATATTTACGCCC----------------TAGAAAAATCATAGCAATAGAAAAGTCATAAAA
AAATGAGATGACATGCATCTCAAATGTCATCTCAAATCCTATGAGTGAAAATAGAAAAGAAGATGTTGTTTGGTTCATAT
CATAGGATTTTTTTTTCTATTGAATCTAGCCTAATGTTTATTTTCCTATGAAATGTGGAGGATAGAAAAAATTCCTTCAT
AGAAATAGGATTCTATTCCTACAAACTAAAGGACTCTAAAGGAATTTTTTCTATAAAAATATTATCCTACAAAATTCCTC
-CAAACCAAAGGAGGCCTTAACATCTAGTATACCAAACATATATTCATTATAAAATGTCCTCCCTTTGTTTCTAAATATA
AGTCTTTTAAGAGCATCTACAACCGAACTTGAGAAATCCGACCCCTCAAAC--------ACGCGCGGATAGTGACCAGTC
ACGTCTCAAAAAATGGATTTCACATCCGGATATCTCAAATTAAAAACATGAAATCCATATTATTACATGCAACACGGCGA
TCTTTGAGCGGAGCTTCGTCCGGGTCCGCTCCCCGCTCGTCTAGCTCCGCCGTGGCCATGTCCAGCGGCCGGTTGCGCCC
CTCGGAGTGTTGATCCAGTCGCCGGCAAGGTAGAGTAAGGCATGGGACATGAGTCGGCTCACGCGACTCAAGGCGTTGTC
GTCTCCCATGCCCTACTCTTCATCGTCGGAGCCCGGAACCCGTTGGGTGCCGGT
>chr5B_1
GCTGACGAAAAAAAATCAAAACAAATACTAGAAAATATATATATATATCAATTTTTTTGTGAGGTAGACAATTTGATGTG
TGAAGCCCGCTCCAATTTTTAAATTATTTGAACATCTGAGGAGCTCTCAACAAAAAAGACAAATTAGGGGTCTGTAAAAA
TGTTCACTACTCATGTACTGTTTTGGTCTGATTTGTCTTTTTTGCTGAGAGCTGCTGAAATGCCCAAATGACTTAAAATT
TGGAGCGGGA---ATGCATCAAATTGTCTGCTGCATAAAAAAATTTGGAAATTTTTGAATTTGTTTTGAATTTTTTTTTT
AAAAAATAACCGGG--TGCAGATGAGTCTGGGCACCAAAACGCCCTACTCCATAGAAAGATATATAACCAACAGCAACAC
CTTGGCCATTATTATGAATTCAACCATCAAAAAATAATCTCCATAATACTAGAGGGACAATGCTAATATCAACATTATGC
ATGTCGTGAATTAAGCACTGGGCATCAACAGCACTAGAAGC---------------------------------------
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>chr5D_482
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--------AATCAAGCACTCGGCATCAACAGCACGAAGCGATCAAACTGACCCGATCGTCATGACATACCCAGACCTCGT
TGAATTAAACTAGCAGTTAAACACGATGTGTTTGTTAGGGTCTGGAGCCGACGGAGACGTCTGACTGGAACAACACCCAC
TCCAAAGACCAGGCGGCTCGTAAAGGCTATGCAGTCCGCACCCGCGGTGTTGACGTGTTCGGCGCTGGGCCGCGCGAAGT
GGATCGTATCAAACACTCACA------CT------GCCGCTACGTCCAATCGCACGCGCTCCGTGTAGAATAGACCAGTC
GGCCGGCCGGACCCCATCTCCGCCACGTCCATCATCCCGGTGCAGCTCCGAGCG-GACAAGCCCACCTTCCTGCTGCCTG
CCGCCT---------------ATATAGAGCAAACCACCCACCGGGGACACACCCATCTCCAGATTCCTTTCACTTGGA--
----TAAACACCAGA-------------------GCTCTTCGTCGACCAACAACATCGA--TCCAGGCCAAGATTTGGTA
CTACTTTACGTCGCAGCACGAGCACACCACGGTCCGCA----TATACATGGGTAACTTGGTCTCGCAGTGCGTCACGGGC
GGCGCAGAGCGCGCGGGGCCGCTGGTCGTCCTGCCGGACGGCAGCCAGTTCCGGCTGGAGGAGCACGCCGGCGTGGCCGA
GCTGATGATCGAGGCGCCGGGGCACGTTGTTGCCATAGCGAGGGACGCCGCCAAGGAGCGGCGGCTGCGTGCCCTGGCGG
CCGACGAGTTCCTGCGCGCCGGGGAGGTGTACCTCCTCGTGCCCGCCGGGAGGGCCGGGGCGCGGCTGGGCGGTCAGGAG
GCGGACGCCATCCGCCGGCTGGTGTCCGGCAAGAAGGATGGCAAGGGCAGGGGCAGCAGGTCCGGGAGAAGGATTTTCCC
GGAAGGAGAAGCCGCGAGCACCGAGGGTGGAAAGGAGTCTGCTGAATGTGCGCTGCTTTGTAGGATTAGGCCAAGGCAGT
GGAGGCCCGCCCTTGACACCATCTTCGAGGCTTAGATCGATCATGATTCATGGCACCCGTCTGTAGGGTAGAATAGGAAA
TCCAATTCATTCATTCGTTTTGTTATTTTTTGTTGAGTATTGATCATCCTTCTTTTTCAAGCAAGGAGAGAAGGTATTCG
G-TTGACGTGTACATTTGTCTTGTAAACCTTCAACTTATTTTGGAGTAGAAGGTTGTCAGAGCTAGAAATAGTACTAATT
GTCAAACCTAAATGCTACTCCCTCCGTT-------------CATACAGATTTTTTGAGAAGTCAAATTTCACAAACTTTG
ATCAAATGTATAGGGAAAAACATTTAGGCCTCCTTTGGTCCTTAGGGTAGAAAAATTATTGGAAAATCATAAGAAATA--
-----AGATGACATGCATCTCAAATGTCATCTCAAATCCTATGAGTGAAAATAGAAAAAGAGATGTTATTTTGTTCACAT
CATAAGAA---TTTTTCCATTGAGTCTAACCTAATGTTTATTTTCCTATTAAATGTGGAGGATAGAGAGAATCCCTTCAT
ATAAATAGGATTCTATTCCTACAAACTAAAGGGCTCTAAAGAAAACTTTCCTATATAAATTCTATCCTACAAAATTTCAT
TCAAACCAAAGGAGGCCTTACATT-TAGAATGCCAAACATATATTCATCGTAAGATGTCCTCCCTCCGTTTCTAAATATA
AGTCTTTTTAGAGCATCTACGGACGGACTTGGCAAATCCGACAACTCAAACACCCGCGGACGCGCGGACAGTGACCTGTC
ACGCCTC-AAAAATGCATTTCACATCCGGATATCTCAAATTAGAAATCTAAAATCCATATTATTACATGCAACGTAGCGA
TCTTTGAGCGGAGCTTCGTCCGGTTCCACTCCCCGCTCGTCTGGCTCCGCCGTGGCCATGTCCGGCGGCCGGCTGCGCCC
CTCGGAGTGTTGGTCCGGTCGCTGTCAAGGTAGAGTAGGGCAGGGGACACGAGCCGGCTCACTGGACTCAAGGCGCCGTC
GTCTTCC-----------------------------------------------
>chr5B_508
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----------------------------------GAAGCGATCAAACTGACCCGATCGTGGTGACAGATCCAGAGCACGT
TAAATTAAACTAGCAGTTCAACACGATGTGTTTGTTTGGGTTTGGAGCCGACGGAGACTTCTGACTGGAACAACACCCAC
TCCAAAGACCAGGCAGCTCGTTCGTGAGGC----TCTGCGCCCGTTGTGTTGACGTGTTCGGCGCTGGGCCGCGCGAAGT
GGATCGTATCAAACACTCACA------CTCTCGCTGCTGCTACGTCCAATCGCACGCGCTCCGT--AGAATGGGCCAGTC
GGCCGGCTGGACCCCATCTCCACCACGTCCATCT---CGGTGCAGCTCTGAGCGGGACAAGACCACCTTCCTCCTGCCTG
CCGCCTTCCTCTCCTCCGGCTATATAGAGCAAGCCACCCACCGGGGACACACCCATCTCCAGATTCCTTTCACCTGGAGT
CGGATAAACACCAATCAAAACTCCGGTGCTACTTGCTCCTCGTCGACCA-CAAGATCGATCTCCAGACCAAGATTTGCTA
GCACGTTGTAGCACAA------CACACCAGAGTCCGG----GTATACATGGGTAACTTGGTCTCGCAGTGCGTCACGGGC
GACGCAGAGCGCGCGGGGCCGCTGGTCGTCCTGCCGGACGGCAGCCAGTTCCGGCTGGAGGAGCACGCCGGCGTCGCGGA
GCTGATGATCGAGGCGCCGGGGCACGTGGTTGCCCAGGCGAGGGACGCCGCCAAGGAGCGGCGGCTGCGAGCCCTGGCGG
CCGACGAGTTCCTGCGCGCCGGCGAGGTGTACCTCCTCGTGCCCGCTGGGAGGGCCGGGGCGCGCCTGGGCGGTCAGGAG
GCGGACGCCATCCGCCGGCTGGTGTCCGGCAAGAATGGTGGCAAGGGCAAGGGCAGCAGGTCCGGGAGAAGGATTTTCCC
GGAAGGAGAAGCAGCGAGCACCGAGGATGGAAATGAGTCTGCTGAATGTGCGCTGCTTTGTAGGATTAGGCCAAGGCAGT
GGAGGCCCGCCCTCGACACCATCTTCGAGGCTTAGATCGA-------TCATGGCCCCCGGCTGTAGGGTAGAATAGGAAA
TCTGATTCATTCATTATTTTTGTTATTTTTTGTCGAATATGGATCATCCTTCTTTTTCAAGCAAGGAGAGAAGGTATTCG
T-TTGACGTGTACATGTGTCTTGTAAAGCTTCAACTTATTTTGGAGCAAAAGGTTTTCAGAGCTAGAAATAG---TAATT
GTCAAACCTAAATGTTACTCCCTCCGTTTCATGATGCAGGGCATACAGATTTTTTGAGAAGTCCAACTTCACAAATTTTG
ATCAAGTTTGTAGAGAAAAACATTTAC-----------------------------------------------------
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>SNPs
--------------S--------------------SS-SS-S-S-SSSS-----------------------------S-
---S--------------------------S-----------S------S---------------------S--------
--------SS-S-------------S--S---------------------S-----S------S----------S-----
---------SSSS-S--------------S-S---S--SSSS--------SS-----------------S------S-SS
SSSSSS-SSSSSSSSS---------------S----------------------S------------S-----S------
S---------S----------------------S---------------S-S----------------------------
----S--S-------------------------------S----------------------------------------
--------------S--------------------------------------------------------------S--
---S----------------------------------------------------------------------------
------------------S--SSSSSS-----------------------------------------------------
-------------------------------------------------------------S--------S---------
---------------------------------S---------S-----S-S----------------------------
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--S--S--------------------S----------SSSS---------------------------------------
-----------S---S-S--------------------------------------------------------------
-----------------------------S--S------------------------------------S----------
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--------------------------------------S----------------S------S-----------------
---------------S----------------------------------------------------------------
-------------------------------------S------------------------S----S------------
--------------------------------------------------------------------------S-----
-S-----------------------------S----------------S-------------------------------
--------------------SS--S--S------------------------S---------------------------
--------------------S---------S-------------------------S--S-S--S-SS-S-SSS-SS-SS
SSSSS-----------------------------------------------------SS-------S---S-----S--
----S--SSSS------S-----S----S--------------------S----------------S-S---S-------
-S------------------------------S--------S--SS---S-----S----SS--------------S-SS
--------------------SSS-S---S--S----------------SS---S-----------SS-------------
--------S-----------SSS--S-----SS---------SS------------------------S-------S---
---S---S-------S--------------------------S---SS-S-----------------------SSS----
-----------------------S---S--------------S--------------------S--------S-------
------------S---S-----S-S------------S----S------S---S--------SS-----------SS---
----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_930
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------------------------------AAATCACCCACCGAGGACAA------------------------------
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>reverse_2570
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---------GCCCTACTCTTCATCGTCGG-------------------------
