>input_sequence_79270
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------------------------------------------------------ATGGCCGCGTATATATACAGAATATA
TGCAGCAGTGTCACCACACAGTGCCACACAGACACACGTACGCATGGTACGTTCGAGCGGCATGAAGGGAGGACGGCGGT
CCAACAGGAGGCTCCTCAGGTCGTTCCTGGGCGCGTGCAGGAAGCTCAGCGCCGAGCTGCAGCTGCTCGGC---------
CCGACGGCGAGCGCGTGGGTGCAACTCGAGGCCGGCG---------ACGAGGCCATCCCGGTGGACGTGCCGAGGGGCCA
CACGGTGGTGTACGTCGGGGAGGAGCTGCGGCGGTACGTCGTCCGCGTGTCCTCCCTCGACCACCCGCTGTTCCGGGAGC
TGCTCGACCGCGCGCGGGAGGAGTACGAGTTCGCCGCCGACGCCAAGCTGTGCCTGCCCTGCGACGAGGACATCTTCCTC
GCCGTGCTCTGCCACGTCGACTCCAAGCACGACTACTGGAGGCTAGCACTCTGCAGCTGA--------------------
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>chr2D_1_TraesCS2D01G377800
GCCGCCGCCGCCGACGATGCATGCAGTTCCTTGACCTCGAAAGCAGAATGTGAAGCTGGCAGCGTACCGCTCG-------
GCCGCCGGCCGGTGGCTCCGGAGAGCGAGGAGCAGTCCCAGCAGAGCTTCCTTTCACCGCAATGAATGCCGCCGCCGCCG
CCGCCGTC------ACCCCGTCCAATGAGGCCGCGAGCCCCCATCCCTGTCCTCGCGCCCTAGC-TTATCTCCTCCCCGA
CCTCAAGGCGATGTGTGCAAGAATCTAACTCCTTCCACAACTTCGAGACGCAGTTAGTTGCTCGGCCGCTCGATCCTCCT
CCCATTATTGGAGAGAGAACGC----GCCGCTCCAGAATCTT----------------GGTGACGTCGATCGACCATTTT
GGTTGAAGGAGATGGGAGGAGGAGAAAAGGACTACGTAGTAGTACGTACACGGTGATGTACCAGTTCCATACGTTCAAGG
ACGTACGCGCTGCCAATACCTTTTGTACTGAAAACTGTTTTATATCCTGTCAAGGGCTGTGGCCTTTGCGTGTTCAACAT
GCGCCTGCCGATAAGTTCGTGTCAAGCTGTACGCAGTGGTTGCTCGAGACTGCAAGCCACTCATTTGACCAGAATATCGT
GGCGGAATTC----------CTGCCTCGGTTGATCCATCCGTAGAAAGGTACGTAGGCCAGTGGTGATGGTGTACGA---
---CTGTACGCTAATGGCAGCACATGCACGACTTAATGCAGACACAGGTAATTTTCAACCATCGCGACGACGG-------
-CATCACCGTGGATGCAACTA----TTGCCCGCATAACGATAAGTGACATAAGGAATCCCCTTGGCCGTTGCGGC-----
------------------CTAGACCGTGCAAACGTATATA------CCAATGTACGATCGGTTTTCTTTCGTTCTCTTTT
GCGTACGCACATCCAAACGTCACCTCAAGAGTCTAGTTTTCCAGCTTGCCACAAGCTAAACAAACATAGCACATGCCTCT
GAGGCTACAACC---ATTAATGTCGACCAATCCACAAGGCACAGGACCAGTTGCATGGCCGCGTATATATACAGAATATA
TGCAGCAGTGTCACCACACAGTGCCACACAGACACACGTACGCATGGTACGTTCGAGCGGCATGAAGGGAGGACGGCGGT
CCAACAGGAGGCTCCTCAGGTCGTTCCTGGGCGCGTGCAGGAAGCTCAGCGCCGAGCTGCAGCTGCTCGGC---------
CCGACGGCGAGCGCGTGGGTGCAACTCGAGGCCGGCG---------ACGAGGCCATCCCGGTGGACGTGCCGAGGGGCCA
CACGGTGGTGTACGTCGGGGAGGAGCTGCGGCGGTACGTCGTCCGCGTGTCCTCCCTCGACCACCCGCTGTTCCGGGAGC
TGCTCGACCGCGCGCGGGAGGAGTACGAGTTCGCCGCCGACGCCAAGCTGTGCCTGCCCTGCGACGAGGACATCTTCCTC
GCCGTGCTCTGCCACGTCGACTCCAAGCACGACTACTGGAGGCTAGCACTCTGCAGCTGATCACAGTGATCCGATCCCCC
GAACGCCGCGCGCGTCGTTGGCCCCTCTCCTGTGTAGGATCCAAAGTACAGTAGCCGTCTTAATTGCTGCGGGATAACGA
GATTTGTGTTCATGGTCTCAGATGTATAGGTGTAGGCCCCATGTGTGCAGAAATTTAGTTCCGTTGTTCAATGCTCTGTA
TTCCATTCTCCAAGGATGAGTCGCATGCAAAATGGCGTGGTACAGAATGGCATCCATTCTTTCTACGTAA----CTTGCA
ATTTGTTTGGCCTCATAATTCGTTCGGTCCATGACTATCCAGGCTTTGCAATTGCGCACAGTGCAAAATTAGTGTTAATT
TGAAAGCTAGTAGTGGTGAACTAATTGATAAGCTGACTCCATAGGGCATTTCTAACCGATCCCTTATAACCCAGGGGCGG
AGCTAGCGTTGTGCATGTGGGTAGTTTTGTATATGAACCCAATAGAAATTGAAGGATGAACCCATTGGATCGGAATTGAC
AAGCTAGAAGCCTTTTAGTCCACAAATTTTTAACGTGAGTAGCCCAGCTAAGGCGCACAATTAAACTACTACTGCCTCGG
TGCGTGC-----CTCAAATTCATATCACGTA----CTACAATCGTACGCACCAGGATGCACGTCCCGTTAATTGACTGTC
GCTTCCCCAAGACCGCCGCCTTTCCTCTAGCCTTCTCTCTTTACCCTATTCGCC--------GTCACGGTGTCGACGTGT
CACCTGATCTCCAGCGGCAAC-------------CAGACGGTTGCAACAGCAGGTGGGCATGCAATCCCAATTCAAAGAA
ATTAGATCCCATCATCACA-TTTTCTTTCTCTTATGCATGTTCGGTTCAGCCTAGTGCGATAATTAATGACCTTTGCCCT
AATTTTTAATTTGTTTTTTCCTTAACTTTGATTGATCTAGGCTCATCAAATTCAGATAATG--ATGGAGTCATCAAGG-C
ACATATTGGATATAGGCATGTTGCATCAGAATCTCGTTACTGCAAATAGTCTCCCGAA
>chr2A_1
GCCGCCGCCGCCCAGGATGCACGTACTTCCTTCACCTCGAAAGCAGAATGTGAAGCTGGCAGCGCACCGCTCG-------
GCCGCCGGCCGGTGGCTCCGGAGAGTGAGGAGCAGTCCCGGCAGAGCTTCCTTTCACCGCAATGAAT------GCCGCCG
CCGCCGTC------GCCCCGTCCAATGAGGCCGCGAGCCCC-ATTCCTCTCCTCGCGCCCTAGC-TTATCTCCTCCCCGA
CCTCAAGGCGATGTGTGCAAGAATCTAACTCCTTCGACAACTTCGAGACGCAGTTAGTTGCTCGGCCGCTCGATCCTCCT
CCCATTATTGGAGAGAGA----GCGTGCCGCTCCAGAATCTT----------------CGTGACGTCGATCGACCATTTT
GGTTGAAGGAGATGGGAGGAGGAGAAAAGGACTACGTAGTA---CGTACACGGTGATGTACCAGCTCCATACGTTCAAGG
ACGTACGCCGGGACTATCTCGTACCGTCTAAGAACTGTTTTATATTCTGTCAAGGGCTGTGGCCTTTGCGTGGTCAACAT
GCGCCTGCCTATAAATTCGTGTCAAGCTGTACGCAGTGGTTGCTGGAGACTGCAAGGCACTCATTTGACCGGAATATCGT
GGCGGAATTCAGGAGCACTGCTGCCTCGGTTGATCCATCCATATAAAGGTA----GGCCACTGATGATGGTGTACGG---
---CTGTACGCTAATGGCAGCACATGCACGACTTAATGCAGACACAGGTAATTTTCAACGATCGCGACGACGGCTTTA--
-CATCACTGTGGATGCAACTAAAAGTTGCCCGCATAACGATAAGTGACATAAGGAATCCCCTTGGCCGTTGCGGC-----
------------------CTAGACCGTGCAAACGTATATA------CCAATGTACGATCGGTTTTCTTTCGTTCTCTTTG
GCGTACGCACATCCAAACGTCACCTCGAGAGTCTAGTTTTGCAGCTTGCCACAAGCTAAACAAACATAGCACATGCCTCT
GAGGCTACAACC---ATTAATGTCGACCAATCCACAAGGCACAGGCCCAGTTGCATGACCGCGTATATATACAGAATATA
CGCAGCAGTG---CCACACAGTGCCACACAGACACACGTACGCATGGTACGTTCGAGCGGCATGAAGGGAGGACGGCGAT
CCAACAGGAGGCTCCTCAGGTCCTTCCTGGGCGCCTGCAGGAAGCTCAGCGCCGAGCTGCAGCTGCTCGGC---------
CCGACGGCGAGCGCGTGGGCGCAACTCGAGGCCGGAG---------ACGAGGCCATCCCGGTGGACGTGCCGAGGGGCCA
CACGGTGGTGTACGTCGGGGAGGAGCTGCGGCGGTACGTCGTCCGGGTCTCCTCCCTCGACCACCCGCTGTTCCGGGAGC
TGCTCGACCGCGCGCGGGAAGAGTACGAGTTCGCCGCCGACGCCAGGCTCTGCCTGCCCTGCGACGAGGACATCTTCCTC
GCCGTGCTCTGCCACGTCGACTCCAACCACGACTACTGGAGGCTGGCACTCTGCAGCTGATC--------------CCCC
GAACGCCGCGCG---CGTTGGCCCCTCTCCTGTGTAGGATGCAAAGTACAGCAGC-----TAATTGGTGCGGGATGACGA
GATTTGCGTTCATGGTCTCGGGTGTATAGGTGTAGGCTCCATGTGTGCACAAATTTAGTTCCGTTGTTCAATGCTCTGTA
TTCCATTCTCCAAGGATGCGTCGCATGCAAAACGTCGTGGTACAGAATGACATCCATTC----TAGGACGTAACCTTGCA
GTTTGTTTGGCCTCCTAATTCGTTCGGTCCATGGCTATCCATGCTTTGCAATTGCGCACAGTGCAAAATTAGTGTTAATT
TGAAAGCTAGTGGTGGT---------------------------------------------------------------
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>chr2B_4
---GCCGCCGCCGCCCAGCATGCATGTCCA-TGACCTCGAAAGCAGAATGTGAAGCAGGCAACGGACCGCTCTGCCGACT
GCCGCCGGCCGGTGGCTCCGGAGAGTGAGGAGCAGTCCAAGCAGAGCTTCCTTTCACCGCAATGAAT------GCCGCCG
CCGCCGCCGCCGTTGCCCCGTCCAATGAGGCCGCGAGCCCCCATCCCTCTCCTCGCCCCCTAGCTTTATCTCCTCCCCGA
CCTCAAGGCGATGTGTGCAAGATTCTAACTCCTTCGACAACTTCGAGACGCAGTTGGTTGCTCGGCCGGTTGATCCTCCT
CCCATTATTGGAGAGAGAACGCGCGTGCCGCTCCAGAATCTTCGCTCGTACGTACTCGGGTGACGTCGATCGACCATTTT
GGTTGAAGGAGATGGGAGGAGGAGAAAAGGACTACGTAGTA---CGTACACGGTGATGTACCAGCTCCATACGTTCAAGG
ACGTACGCGCTACCATTACCTTTTGTACTGAAAGCTGTTTTATATTCTGTCAAGGGCTGTGGCGTTTGCGTGGTCAACAT
GCGCCTGCTGATAAATTCGTGTCAAGCTGTACGCAGTGGTTGCTCGAGACTGCAAGCCACTCATTTGACCGGAATATCGT
GGCGGAATTCATGAGCACTACTGCCTCGGTTGAT----CCGTAGAAAGTTA----GGCCAGTGGTGATGGTGTACGAGTA
CGACTGTACGCTAATGGCAGCACATGCGCGACTTAATGCAAACGCAGGTAATTTTCAACGATCGCGACGACGGTAAGTTG
CCATCACTGTGGATGCAACTAAAAGTTGCCCGCATAACGATAAGTGACATAAGGAATCCCCATGGTTGTTTACAACTACT
TGCAAAGTTGTCGACCGACTAGACCTTGCAAACGTATATATATATACCAATGTACGATCGGGTTTCTTTCGTTCTCTTTT
GCGTACGCATATCCAAACGTCACCTCAAGAGTCTATTTTTCCAGCTTGCCATAAGCTAAACAAACGTACCACATGCCTCT
GAGGCTACAACCATTATTAATGTCGACCAATCCACAAGGCACAGGCCCAGTTGCATGGCCGCGTATATATGCGGAATATA
TGCAGCAGTG---CTACACAGA--CACACAGACACACGTACGCATGTTACGTTCGAGCGGCATGAAGGGAGGACGGCGAT
CCAACAGGAGGCTCCTCAGGTCCTTCCTGGCCGCGTGCAGGAAGCTCAGCGCCGAGCTGCAGCTGCTCGGCGCCGCCGCC
CCGACGGCGAGCGCGTGGGTGCAACTCGAGGCCGGCGGCGGCGGCGACGAGACCATCCCGGTGGACGTGCCGAGGGGCCA
CACGGTGGTGTACGTCGGGGAGGAGCTGCGGCGGTATGTCGTCCGGGTGTCCTCCCTCGACCACCCGCTGTTCCGGGAGC
TGCTCGACCGCGCGCGGGAGGAGTACGAGTTCGCCGCCGACGCCAGGCTGTGCCTGCCCTGCGACGAGGAAATCTTCCTC
GCCGTGCTCTGCCACGTCGACTCCAAGCACGACTACTGGAGGCTAGCGCTCTGCAGCTGATCACGAAGTTGGTGGATCGC
----------CG---CGTTGGCCCCTCTCCTGTGTAGGATGCAAAGTACAGTAGC-----TAACTGCTGCGGGATAACGA
GATTTGCGTTCATGGTCTCAGATGTATAGGTGTAGGCTCCATGTGTGCAGAAATTTAGTTCCGTTGTTCAATGCTCTGTA
TTCCATTCTCCAAGTATGCGTCGCATGCAAAATGTCGTGGTACAGAATGACATCCATTC----TACGTAA----CTTGCA
GTTTGTTTGGCCTAATAATTCGTTCGGTCAATGG-TATCCAGGCTTTGCAATTGCGCACAGTGCAAAAT-----------
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>chr2D_1894
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---------TGTGCATGTGGGTAGTTTTGTGTATGAACCAAATAGAAATTGAAGGATGAACCCATTGGATTGGAATTGAC
AAGGTAGAAGCCTTTTAGTCCACAAGTTTATAACGTGAGTAGTCCAGCTAAGGCCCACAATTAAACTACTGCTGCTTCGG
TGCGTGC-----CTCAAATCCTTATCACGTA----CTACAATCGTACACACGAGGATGAACGTCTCGTTAATTGACTGTC
GCTTCCCCAAGATCACTGCCTTCCCACTAGCCTTCTCTCTTTACCCTGTTCGTC--------GTCATGGTGTCAGTGTGT
CACCTGATCTCCAGTGGCGAC-------------CAGAAGGTTGCAGCAGCAGGTGGGCATGCAATCCCAATTCAAAGAA
ATTAGATCCCATCATCACA--TTTCTTTCTCTTATGCATGTTCAGTTCAGCCTAGTGCGAAAATTAATGACCTTTGCCCT
AATTTTTAACTTGTTTTTTCCTAAACTTTGATTAATCTAGGCTCATCAGATTCAGATAATG--ATGGAGTCAGGAAGGCC
ACATATTGGATATAGGCATGGTGCATCAGAATCTCGTTACTGCCAGTAGTCTCCCGAA
>chr1B_1894
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---------TGTGCACATGGGTAGTTTTGTGTATGAACCCAATAGAAATTGAAGGATGAACCCATTGGATTGCAATTGAC
AAGCTAGAAGCCTTCTAGTCCACATATTTTTAACGTGAGTAGCCCAGCCAAGGCCCACAATTAAACTACCACTGCCTCGG
TGCGTGT-----ATCAAATCCATATCACGTACTTGCTACAATCGTACGGATCAGGATGCACGTCTCGTTAATTGACTGTC
GCTTCCCCAAGACCACCGCCTTTCATCTAGCCTTCTGTCTTTACCCTGTTTGCC--------ATCACGGTGTCGGCATGT
CACCTGATCTCCAGCGGCGAC-------------CAGAAGGTTGCAATAACAGGTGGGCATGCAATCCCAATTCAAAGAA
ATTAGATCCCATCATCACATTTTTTTCTCTCTTATGCATGTTCAGTTTAGCCTAGTGCGA----TAATGACCTTTGCCCT
AATTTTTAATTTGTTTTTTCCTGAACTTTGGTTGATCTACGCTCATCAGATTCAGATAATG--ATGG-GTCATGAAGGCC
GCATATTGGATATAGGCATGATGCATCTGAATGTCGTTACTGCAAGTAGTCTCCCGAA
>chr6D_1894
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---------TGTGCATGTGGGTAGTTTTGTATATGAACCCAATAAAAATTTAAGGATGAACCCACTGGATCGGAATTGAC
AAGCTAGAAGCCTTTTAGTCCACAATTTTTTAACGTGAGTAGCCCAGCTAAGGCCCACCAA-------------------
--------------------CATATCACGTA----CTACAATCGTACGCACCAGGATGCATGTCTCGTTAATTGACTGCC
GCTTCCCCAAGACCGCCGCCTTTCCTCTAGCCTTCTCTCTTTACCCTGTTCGCCGTCAGCCTGTCACGGTGTCGACGTGT
CACCTGATCTCCAGCGGCGAC-------------CA-------------GCAGGTGGGCATGCAATCCCAATTCAAA-AA
AATAGATCCCATCATCACA-TTTTGTTTCTCTTATGCATGTTCGGTTCAGCCTAGTGCGA----TAATGACCTTTGCCCT
AATTTTTAATTTGTTTTTTCCCGAACTTTGATTGATCTGGGCTCATCAGATTCAGATAATG--ATGGAGTCATGAAGGCC
ACATATTGGATATAGGCATGGTGCATCAGAATCTCGTTACTGCAAGTAGTCTCCCGAA
>chr7D_1920
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-----------------------------------AACCCAATAGAAATTCAAGGATGAACCCATTGGGTCGGAATTGAC
AAGCTACAAGCCTTTTAGTCCACAAATTTATAACGTGAGTAGCCCAGCTAAGGCCCACAATTAAACTACTACTGCCTCGG
TGCGTGCCTCAACTCAAATCCATATCACATA----CTACAATCGTACGCACTAGGATGCACGTCTCGTGAATTGACTATC
GCTTCCCCATGACCGCCGCCTTTCCTCTAGCCTTTTCTCTTTACCCTATTCGCC--------GTCACGGTGTCGGCGTGT
CACCTTATCTCCGGCGGCGACCAGAAGGTTGCAACA-------------GCAGGTGGGCATGCAATCCCAATTCAAAGAA
ATTAGATCCCATCATCACG-TTTTCTTTGTCTTATGCATGTTCAGTTCAGCCTAGTGCGA----TAATGACCTTTGCCCT
AATTTTTAATTTGTTTTTTCCTGAACTTTGATTGATCTAGGCTCATCAGATTCAGATAATGTGATGGAGTCATCAAGGCC
ACATATTGGATATAGGCATGGTGCATCAGAATCTCGTTACTGCAAGTAGTCTCCCGAA
>SNPs
---------------------S-S----------------------------------------S---------------
-------------------------S-----------------------------------------SSSSSS-------
--------------S---------------------------------S-------------------------------
-----------------------------------S--------------------------------------------
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-----------------------------------------SSS--------------------S---------------
---------------------------------------------S--------------------------S-------
--------------S-------------------------------------------------------S---------
---------------------------------------------------SSSS-------------------------
-----------------------------------------------------------S--------------------
-------S------------------------------------------------------------------------
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---------------------------------------------S----------------------------------
----------SSS-----------------------------------------------------------------S-
----------------------S---------------------------------------------------------
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---------------------------------------------S----------------------------------
---------------------------------------------S----------------------------------
----------------------------------------------------------------SSS-S-SSSSSS----
------------SSS-------------------------S--------------SSSSS--------------------
------S------------------------------S------------------------------------------
------------------S---------------S--------------S---------SSSS-----------------
S--------------------------------S----------------------------------------------
-----------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS-----------------------------------------------------------------------
------------------------------------------------------S-------------------------
-------------------S--------------------------------------------S---------------
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------------------S-------------------S-----------------------------------------
------------------------------------------------------------S-------------------
----------------------S-------------------------S-------------------------------
--------------------S------------------------S------------
>forward_1086
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--------------------------CCAATCCACAAGGCACAGGA----------------------------------
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>reverse_2000
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-------------------------------------------------------------------------------G
AGCTAGCGTTGTGCATGTG-------------------------------------------------------------
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