>input_sequence_79256
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-----ATGGAGGCGGAGGTGCAAGCGCGCGAGGAGGTGGAGGAGGAGGAGGAGG------AGGTGGCGTGCGAGTGCTGC
GGGTTCACGGAGGAGTGCACGGCGCCGTACATCGCCGGCGTGCGCTCGCGGTACGGCGGGCGGTGGATCTGCGGGCTGTG
CGGGGACGCGGTGGCCGAGGAGATGTGCAGGGCCTCGCCGCCGGTGTCGCCCGCGGAGGCGCTGGACCGCCACGCCTGCG
TGTGCGGCGAGGGGCGCCGCGCGTCCGCTCCC------CCGTCGCCCGGCGACGAGCTCATCGCGGCCCTGCGGCTGCTG
CTCCGCCGCAGGCTGGGCTCGCCGTCGCCGCCGAGGCTGGTCCGCTCCACGCCGAGCAGCCCGAGGCGCGACGCCGTGGC
CCCCGCCGCGGCCGCGGGCGCCGGGCCCGGCGCCGGCTGCCCGCTCGCGCGCACCGAGAGCTGCTTCGCCGCGCTCGTGG
AGTAG---------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G170400
GATAGGAGGAGGATCACGCCTCCAGGTCAACGCGGCCGTGCACGCACTGCCAATGTGAACGACGACGACGTACGCCGGCT
TCTCCCTTGCAAGTTACCGCTGGCGTGTTCGATTCAGCAGGGGCCAGTTGTAACAAGCAATAGACAAGGCGAAGCATCAC
TGTCCCAGC----CTCGTTTCTCTTGG---CTTCTTCCTTCAGCAAGCGCCCTACACGTTCCACGAGAATTGCTAAGCGT
CTGCCTCGCCAAGTAGCGACCCGGACAGGTACGCGTGTGGACGTTGACCACCAGCGCCGTCACATCTTCTTTTTGTATAG
TACAACAACTTGCACCAGGCAGTGTGTAATTCTTCAATCATCAAAGTAGAATCTATCTACACACAAACTCGCCTAGCTAG
AAACACCACACCACACGTACGGCTGCCGTATTCTCATCAAACACGACGCCATGGTATCGTACCAGTTT-ATTCACCATCC
ACGTTC---CACGAGATAACGAGGCGCTCCCCGCAAAAAAAAAGAGAGAGAGAGAGATAACGAGGCGCTCACTTGATGTG
CTTAAACAAGCAAGCCGTGCGGTGCCGCGGTGCGGTACGAAACGGCCGCGGCAAGTT-AATCAGTCGCAGCCGCGGGACA
GCACAGGCAGGGCGGACGGACGCCTTTGGCGCCACCCAGACCACAAGCAACGGCGGGACCCCGGCCCGGCCCGCCCACTT
GGCCACAGCTGGCAGGCGGACCCGGTCCCGGTC-CCGCGCCCCCGCCCAATGCCGCGGCACCACGTGGCGCGCGCGGGCC
CGGCCTCATAATTCAGTCGCACGTACGCCGGCCCCACACGCCAGCATCTCGCGCCCGCGCACGACGACGACGGGCCGGAT
AAATACGGACTCCGGACGCGCTCACGAACACGAACGGGGCTTTTCTTCCTCTCTGGTCATCGTCGGAGC---------AG
CAGCA---ATCACCGGCGTTGA-------GAAGG-------------CGGCGGGGCTACGAATCAGTGAGCTGGAGGTCT
TGACCATGGAGGCGGAGGTGCAAGCGCGCGAGGAGGTGGAGGAGGAGGAGGAGG------AGGTGGCGTGCGAGTGCTGC
GGGTTCACGGAGGAGTGCACGGCGCCGTACATCGCCGGCGTGCGCTCGCGGTACGGCGGGCGGTGGATCTGCGGGCTGTG
CGGGGACGCGGTGGCCGAGGAGATGTGCAGGGCCTCGCCGCCGGTGTCGCCCGCGGAGGCGCTGGACCGCCACGCCTGCG
TGTGCGGCGAGGGGCGCCGCGCGTCCGCTCCC------CCGTCGCCCGGCGACGAGCTCATCGCGGCCCTGCGGCTGCTG
CTCCGCCGCAGGCTGGGCTCGCCGTCGCCGCCGAGGCTGGTCCGCTCCACGCCGAGCAGCCCGAGGCGCGACGCCGTGGC
CCCCGCCGCGGCCGCGGGCGCCGGGCCCGGCGCCGGCTGCCCGCTCGCGCGCACCGAGAGCTGCTTCGCCGCGCTCGTGG
AGTAGCGAGCGTCCAAGAGGCCCAAACCGAGGCCTCCCCGGAAAATCAAAAAAAGAACCTGATGGTAGTCTCTTCTTTTA
GTTTCC--TTTTTTGCAATTTTCCTTCG----TCCTCTGTAAATATGCATGCCATGTATTGATCCCGTTTCTAGCTTAGG
ATGATGCAGCCGTGAGAGGAATAAAACCAATGTGTACAGAGTGAATACAGTAACAAAAAATATGACC-----AAATGGAA
GTGGAAGTAATTCCATGTGTTTATCATCATCCTAGTGGTTTCTATTTCTCTACGTTGCTCCTTGCTTCTGCTCAAGTTCA
TGCATTCGCCTCTTCTTCAAACAGCTTCTCTATAGCAGAAGCATATGCATATTGCATAGGAATGCACTTTTTCGTAGCAA
AGAGGG-AAAAAAGGAAAACACTTTTGGTAGAGCATCTGATCTCGATGAGAAGTTGGAAACCGAACCAGATCAATCATCT
ATGCAAAGCCGCTTCCCATCCGGTGATG---ATCAGATCGATTCGGATTCGATATGG-----------ATGAGGATACAT
CATTTTCAT------GGATAAACTGAAGTGCAATACCACTTCTTGTTCATGACAGAAATAAAAGAAAACTAGCGCAGGAA
GCAGCCAGCCCGTTTTTCAACCGCGGTACT---GTAGTTTTTTGTTACCATCTTTATCATTACGGCGCATTGTTCACGTG
GCGCGCCTGCTCCATGATAC--GATGCCTCGGCCCTGCATTTCAAAGCCTCGCAATCAGGCAGACAGAGTACGTACCAGA
GAGCTCTGCATCCGTCCAGTGCCATCTCGATCGTTCGCTCCCCTCAACAGCGAACCTATTAATTTAGCGGCTAATCGGGC
CAGAAGCAA-CCACGTCTGTCACTGTTAGAGCCTGCCGTAGCACGCCATTGCTGGCCGACGCGCCATTGATCGCGAGACC
AGCCATATAATTAAGGGAAGTGCGGA-----CAGACAGATACCGTCTTCACCCAGTGGCTGCCGGTACACGCAACCAGGA
CCCTTCCT
>chr2B_1
GATAGGAGGAGGATTAGACCTCCAGGTCAACGCGGCCGTGCCGG---------TGTGAACGACGACGACGTAGGCCGGCT
TATCCCTTGCAAGTTACCGCTGGCGTGTATGATTCAGCAGGGGGCAGTTGTAACGAGCAATAGACAAGGCGAAGCATCAC
TGTCCCTGC----CTCGTTTCCATTGGTTTCTTCTTCCTTCAGCAAGCGCCCTACATGCTCCACGAGAATTGTGGC-CGT
CTGCCTCGCCAAGCAGTGAGCCGGACAGGCACGCGTGTGGACGTTGACCACTAGCGCCGTCACATCTTCTTTTTGTATAG
TACAACAACTTGCACCAGGTAGTGTATAATTCTTCAATCATCGAAGTC-------TCTACAAACTAGC--------CTAG
AAACACCACACCACACGTACGGCTGCCGTATTCCGATCAAACACGGCGCCATCGTATCGTACCAGCTT-ATTTATCATCG
----TC---CACGAGATAACGAGGCGCTCACG-----------------------------------------TGATGTG
CTTAAACAAGCAAGCCGTGCGGTGCTGCGGT-----ACGAGACGGCCGTGGCAAGTT-AATTAGTCGCAGCCGCGGGACA
GGCA-------------GGACGCCTTTGGCGCCACCCAAAACACAAGCAACGACGGGAC-----CCCGGCCCGCCCACTT
GGCCACAGCTGGCAGGCGGACCCGGTCCCGGTCCCCGCGCCCGCGCCCAATGCCCCGGTACCACGTGGC-----------
AGGCCTCATAATTCAGTCGCACGTACGCCGGGCCCACACGCCAGCATCTCGCGCCCGCGCACGACGACGACGGGCGGGAT
AAATACGGACTCCGGACGCGCTCACGGACACG----GGGCTTTTCTTTC-CTCTGGTCATCGTCGGAGCCGCAGCGGCAG
CAGCA---ACCACCGGCGCGGAGAAGGCTGAAGG-------------CGGCGGGGATAGGAATCAGTGAGCTGAAGGTCT
TGACCATGGAGGCGGAGGTGCAAGCGCGCGAGGAGCAA------GAGGAGGAGG------AGGTGGCGTGCGAGTGCTGC
GGGTTCACGGAGGAGTGCACCGCACCGTACATCGCCGGCGTGCGCGCGCGGTACGGCGGGAGGTGGATCTGCGGGCTCTG
CGGGGACGCCGTGGCCGAGGAGATGTGCAGGGCCTCGCCGCCGGTGTCGCCCGCGGAGGCGCTCGACCGCCACGCCTGCG
TGTGCGGCGAGGGCCGCCGCGCGTCCGCGTCCGCTCCGCCGTCGCCGGGCGACGAGCTCATCGCGGCCCTGCGGCTCCTG
CTCCGCCGCAGACTGGGCTCGCCGTCGCCGCCGAGGCTGGTCCGCTCCACGCCGAGCAGCCCGAGGCGCGACGCCGTCGC
CCCCGCCGCGGCCGTGGGCGCCGGGCCCGGCGCCGGCGGCCCGCTCGCGCGCACCGAGAGCTGCTTCGCCGCGCTCGTGG
AGTAGCAAGCGTCCAAGAGGCACAAA-CGAGGCCTCCCCGGAAAATCAAAA-AAGAACCTGATGGTAGTCTCTTCTAGTT
TCC-CC--TTTTTTGCAATTTTCCTTCCTTCCGCCTCTGTAAATATGCATGCCATGTA---ATCGCGTTTCTAGCTTAGG
ATGATGCAGCCGTGAGAGGAATAAAACCAATGTGTACAGAGT--------------------------------------
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>chr2D_7
------AGGAGGATCACATCGCCAGGTCAACGCGGCCGTGCCGG---------TGTGAACGACGACGACGTAGGCCGGCT
TCTTCCTTGCAAGTTACCGCTCGCGTGTTCGATTT-GCAGGGGCCAGTTGTAAGCA--AATAGATAATGTGAAGCATCAC
TGTCTGCCTCCAACTCGTTTCTCTTGG---CTTCTTCTTTCAGCAAGCGCCCTACATGTTCCACGAGAATTGTTGC-CGT
CCGCCTCGCCAAGCAGTGAGCCGGACAGGTGCGCGCGTGGACGTTGACCACCAGCGCCGTCACATCTTCTTTTTGTATAG
TACAACAAC--------GGCAGTGTATAATTCTTCAATCATCAAAGTAGAATCTATCTACAGACTGAC--------ATAG
AAACACCACGCCACACGCACGGCTGCCGTATTCTGATCAAACACGACGCCATCGTATCGTACCCGTTTTATTTATCATCA
----TCGTGCACGAGATAACGAGGCGCTCACG-----------------------------------------TGATGTG
CTTAAACAAGCAAGCCGTGCGGTGCTGCGGT-----ACGAAACGGCCGTGGCAAGTTAAATCAGTCGCAGCCGCGGGACA
GCACAGGCG----GGACGGACGCCTTTGGCGCCACCCAAACCACAAGCAACGACGGGAC-----CCCGGCCCGCCCACTT
GGCCACAGCTGGCAGGCGGACCCGGT-------CCCGATCCCGCGCCCAATGGCCCAGCACCACGTGGC-----------
CGGCCTCATAATTCAGTCGCACGTACGCCGGGCCCACACGCCAGCATCTCGCGCCCGCGCGCGACGACGACGGGCCGGAT
AAATACGGACTCCGCAGGCGCTCACGGGCACG----GGACTTTTCTTTCTCTCTGGTCATCGTCGTAGCCGCAGCGGCAG
CAGCAGCAACCACCGGCGCGGAGGAGGCGGCGGCGGGTTTTCTTTCTCGGCGGGGATA---------------GAGGTCT
TGACGATGGAGGCGGAGGTGCAAGCGCGCGAGGAGCAA------GAGGAGGAGGAGGAGGAGGTGGCGTGCGAGTGCTGC
GGCTTCACGGAGGAGTGCACGGCCCCGTACATCGCCGGCGTGCGCGCGCGGTACGGCGGGAGATGGATCTGCGGGCTCTG
CGGGGACGCCGTGGCCGAGGAGATGTGCAGGGCCTCGCCGCCGGTGTCGCCCGCGGAGGCGCTGGACCGCCACGCCTGCG
TGTGCGGCGAGGGGCGCCGCGCGTCCGCG------CCGCCTTCTCCGGGCGACGAGCTCATCGCGGCCCTGCGGCTCCTG
CTCCGCCGCAGGCTGGGCTCGCCGTCGCCGCCGAGGCTGGTCCGCTCCACGCCGAGCAGCCCGAGGCGCGACGCCGTCGC
CCCCGCCGCGGCCGCGGGCGCCGGCCCCGGCGCCGGCGGCCCGCTCGCGCGCACCGAGAGCTGCTTCGCCGCGCTCGTGG
AGTAGCAAGCATCCAAGAACCAATGAAACC------------------AAA-AAGAACCTGATGGTAGTCTCATCTAGTT
TCCTGCCTTTTTTTGCAATTTTCCTTCC----GCCTCTGTAAATATGCATGCCATGTA---ATCGCGTTTCTAGCTTAGG
ATGATGCAGCCGTGAGAGGAATAAAACCAATGTGTACAGAGTACATACAGTAATAACAACAACAAAAAGAGTAAATGGAA
GTGGAGGTAATTCCATGT-TTTATCATCATCCAAGTGGTTTCTATTTCTCTGTCTTGCTCCTTGCCTCTGCTCAAGTTCA
TGCACTCACCTGTTCTTCAAACAGCTTCTAAAC--CAGACGCATAAGCACCA-------GAATGCACCTTTTCGTCTCAA
AGAGGG-AAAAATGCAAAATACTTTTGCGAAAGCATCTGATCTCAACGAGAAGTTGGAAACCGAACCAGATCAATCATCT
ATGC-----CGTTTCCCATCCGGTGATG---A---GATTGATTCTGATTCGCAGCAGAGGCTCTCGATATGAGCATAGAT
CACTTTCTGGTTCACAGATAAACTT-------------CTCCTTGTCCATGACAGAAATAAAAGAAAATTAGCGCAGGAA
GCAGCCAGCCCGTTTTTCAACCGCGGTACT---GTAGTTTTTGGTTACCATCTTTAT---TACAGCGCATTGTTCACGTG
GCGCGCCTGCTCCATGATAC--GATACCTCGGCCCTGCATTTCAAAGCCTCGCAATCAGACACACAGACTAG----CACA
GAGGTCTGTATCCGTCCAGTGCCATCTCGATCGTTCGTTCCCGTCAACAGCGAACCTATTAATTTAGCGGCTAATCGGGC
CAGACGCAA-CCACGTCTGCTACTGTTAGAGCCTGCCGTAGCACGCCATTGCTGGCCGACGCGCCATTGATCGCGAGATC
AACCATATAATTAAAGTGCATCCATCCATTGCAGACAGATATCGTCTTCACCCAATTGCTGACGGTACACGCAATCAGGA
CCCTTCCT
>chr2B_1712
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-------------------TTTATAATCGTCCAAGTGGTTTCTATTTCTCTGTGTTGCTCCTTGCTTCTGCTCAAGTTCA
T----TCACCTGTTCTTCAAACAGCTTCT-----------------GCACCA-------GAATGCACTTTC-CGTCCCAA
AAAGAGAAAAAAAGGAAAACACTTTTGCGAAAGCATCTGATCTTAACGAGAAGTTGGAAACCGAACCAGATCAATCATCT
ATGCAAAGCCACTTCCCATCCAGTGATGATGATCAGATCGATTCTGATTAGAGATGG-----------ATGAGGATACAT
CACTTTCCGGCTCACGGATAAACTACCTCC-------------TGTTCATGACAGAAATAAAAGAAAAATAGCGCAGGAA
GCAGCCAGCCCATTTTTCAACCGCAATACTGTAGTAGTTTTTTGTTACCATCTTTATTATTACAGCGCATTGTTCACGTG
GTGCGCCTGCTCCATGATACGAGATACCTCGGCCCTGCATTTCAAAGCCTCGCAATCAGAC--------TAG----CAGA
GAGCTCTGTATCCGTCCAGTGCCATCTCGATCGTT-----CCCTCAACAGCGAACCTATTAATTTAGCGGCTAATCGG-C
CAGACGCAATCCACGTCTGCTACTGTTAGAGCCTGCCATAGCACGCCATTGCTGGCCGACGCGCCATTGATCGCGAGATC
AGCCATATAATTA----AAGTGCGGA-----CAGACAGATATCGTCTTCACCCAATTGCTGCCGATACACGCAACCAGGA
CCCTTCCT
>SNPs
-----------------S-----------------------SS-SSSSSSSSS-------------------S-------
------------------------------------------------------S-------------------------
------S-------------------------------------------------S---------------S-SSS---
-------------S--S--S------------------------------------------------------------
-------------------------S-----------------------------------S--S---SSSSSSSS----
----------------------------------S-----------------S-------------------S-S----S
SSSS-------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
-------------------------S-----SSSSS------------S-------------------------------
--------SSSSS-------------------------S-------------S------SSSSS----------------
------------------------------------------S-----------S--------------SSSSSSSSSSS
-------------------------------S------------------------------------------------
--------------------------S-----SSSS-----------S--------------------------------
---------S--------SS-----------------------------------S--S---------------------
-----------------------------------SSSSSSSSS------------------------------------
-----------------------S---------------------S--------------S----------------S--
---------S----------------------------------------------------------------------
----------------------------SS----------------S-----------------------------S---
-----------------------------------------------------------------------------S--
-------------------------------------S------------------------------------------
------S--------------S----S------------------------S------------------------SS-S
SSS------------------------S----S-------------------------SSS---S---------------
------------------------------------------SS---------S--S--SS-SS-SS-------------
-----S------------S-------------S------------------SS---------------------------
----S--S---S-----------------SS-SSS----S-----S---SSSSSSSSSS----------------SS---
---------------------------SS-S-------------S-S---------------------------------
--------------------------------------------S-------S---------------------------
--S----SS---------------SSSSSSSSSSSSSS--S---------------------------S-----------
---------------------------------------------------------S-----S----------------
-------------------------S---------------------------------S--S-----S--SSSSS----
--------S----------------------------S------------------------------------------
----S--------------SS---------------------------------------------------------S-
--------------S-S------------------------S------------S-S-----------------------
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>forward_928
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----------------------------CACGAACGGGGCTTTTCTTC--------------------------------
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>reverse_2405
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----AGCAACCACGTCTGTCACTG--------------------------------------------------------
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