>input_sequence_79250
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----------------------------------------------------------------ATGGCGATGGCGGCGC
TGGTGGTGGTGCTCTCTCTCCTGTTCCTGCCGACCGGGGAGGCGCAGGAGAGGCGCCCGGTGGAAGCGCACCCACACGGG
CTGCCGTTCGAGAGCCCGCTGGCACTGTCCCCGGCGGCGTACGACTTCTTCCACCCCAGTGAGCACGCCCAGCGCGTGGC
CGGCGCCCCCGAGCTCGCGCCGCGCGGGCAGCCAAGGGGGTCGGTGGTCCGGGGCGCCGGCGCGTCCGCGGCGAGCGTGG
CGAGGGCCGACCACGAGGAAGGGGGCGTGGCGCCCGTCAACGCGGCTCGACGAGGTGGAGCTGTCCGTGCGGGCCTGGTG
GCCGGCGTGTTCGTCGGTGCCGCAATGGTGGTCTTGGCGGCTCTCGGGCTAGCGTACGCGGTGGCGCGGCGCCGCGTGGG
CGTCGCGCAAGGTGACGCTGAGGCGGCTAGCGCGCCGAAGTCAAATGCTTAA----------------------------
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>chr1D_1_TraesCS1D01G155500
CGACCATCCGGCACCGCTGGATGGGCCGCGACGACGACGGATCGGGGGCTGCAAATCATGCCCCTGCTTCACTTCTGCAG
CCTGCAGGCGAATGGAACCTTTCAGGAAATCGATTGTGCATGTTTCTCACTTTTCAGAGTGG----TATGAGGATGAAGC
TGGGTGAT----TTAGCATTTCAGACATGAATTGATATCTCAAGCAGTTTTGATCGAATATGGATATATGATGTTAGTAT
AGTACCACCTTCGTCCTGGTTTATAGGTCCCCTTTATAGTTTGTGCCAAATTTTGATTGAAGATTAAACTAATAAAATGT
TAATGCATGTCAATAAAAATTATATTGTTGGATTCGTATTTGAACATAGTTTTCAATGATATAAATTTTTTTGACATGCA
TGAACATTCTTTTAGTTCAATCTATGATCAAAATTTGGCACGAAATACAATAGGGACCAATAAATCAGGACCGAGGTAGT
ATATAGAAGTATATCTCTACCTATCTATGCAAGTTCTTGTTCGGTTT-GTATGTCTGCGAGGGAAAGGATGCATCCATCA
TTAGTAGCCCGAAAGCGCACGTAAAGCAAACGGAAAGCTGCTTGAAAGGCGTCCAGTAAAATAAACAGTGTTCTGAAATA
CTTGTTGGGAAAGCTACGATTGA------GCCTCTAGCCAGTCTCAGTAAACAAACATTA-GTTAAGGTTTGTGTCTCAC
TCTC--GATCATATCCTATGGTGCATTGGACAACCTAATGGACATCTTCTGCATTCGTAAAGCTGATCAAAGAGGCCGAT
ACATCATTCCATCGCTCCGCACCTCCTCATCATTCTGCTCCCCTTTCGCCTCGCCACTACAAGAATTGACGTGGAAGCAA
AGCCTCACAGCCTTTGCTTGCTCGCTTGCGTACCTCTTCCA------CCTAGCTAGCTCATCGTCTATATAAACACAAGG
GGTGCGCAAGACACATACTGCACACTCATGTGACCTGCAAGATCACGCAGCTTGGCTAAAAACCATGGCGATGGCGGCGC
TGGTGGTGGTGCTCTCTCTCCTGTTCCTGCCGACCGGGGAGGCGCAGGAGAGGCGCCCGGTGGAAGCGCACCCACACGGG
CTGCCGTTCGAGAGCCCGCTGGCACTGTCCCCGGCGGCGTACGACTTCTTCCACCCCAGTGAGCACGCCCAGCGCGTGGC
CGGCGCCCCCGAGCTCGCGCCGCGCGGGCAGCCAAGGGGGTCGGTGGTCCGGGGCGCCGGCGCGTCCGCGGCGAGCGTGG
CGAGGGCCGACCACGAGGAAGGGGGCGTGGCGCCCGTCAACGCGGCTCGACGAGGTGGAGCTGTCCGTGCGGGCCTGGTG
GCCGGCGTGTTCGTCGGTGCCGCAATGGTGGTCTTGGCGGCTCTCGGGCTAGCGTACGCGGTGGCGCGGCGCCGCGTGGG
CGTCGCGCAAGGTGACGCTGAGGCGGCTAGCGCGCCGAAGTCAAATGCTTAATGGGCTGGATTAGGGGATAATGTAGTAC
TGTAGTAG------TTTTGCGTGGGCCTAGAGAGTTAGGC--------CGGGCTGGTAGTGTGTAAATTATCAATGTTTC
ATCATCGAGCGACGGGGAAACTGGTTAGCATGCTCGCGCTTCCACTGTCTGAGCTCTCAAGCCTAGGAGGAAACGCATTT
CCTTGCCCGATCGTGCTGTGAACAATCATCACGTA---ATATAAACCTCAGAGAACGCTTTTGTTCGAGTGAAATGCACT
TCCAGTACAGTAAACTTCTTTTGAGTTAATATAAGGTCTGGAGCTCATCCGTGCAATGAATAGTGACAACTTTAATATTA
TATTTATGTGTTCATGTGACGATGTTGTGTTAGCAGCCGATCTTTCTGTCACTTGCATCGAGGTAACGAAACTCTCCCAC
CTCTTCTCCTAGGCTTTTAACCGGCGCCATTGCTAGGCTTATTTCTAATAGTGTAATTTCCCTTTCTGTGGTTACTGTTC
ACGATTCTGAACCTACATTTCACATTTCACTGGGGAAAAGGAATGACAACAAAATTCAATTGGTTTATTTTTCATCATCT
TCCTGGTTGACTGGAGAGATGGGGCCCCGCCACATCACAGTGGGGGCATGGGGACGTAAAAAAGAATCCTATCACTATCA
ACTAATTTGTTACGATCTAGAAAATAAGCGCATGAGTTTGGTCTTACTTCACCCTAAACCAAAGAAGACTTTCATATCCA
AGTTTAGCTCAAATGTAGTTGCCTTCTTTTTAGGCGTGAACAAATGTCAAACCAAAATACTCAATAAGCATAAGCATTAG
CCCTCCCTGAAAAGGAGGTGATCCAGTCACACCTTTCAGTACGGCTACCTTGTTACGACTTCATTCCAGTTGCAAGCCTA
GCCTTAGGCACCCCCCCTCCTTCACAAGAAAACATCTATTTCAATTGCACATTTTTTAAATAACATATTTCACTCTTTCG
AAATAAACGGTTACACATTTCCAAAATCA
>chr1A_1
CGACCATCCGGCACCGCTGGATGGGCCGCGACGACGACGGATCGGGGGCTGCAAATCATGCCCCTGCTTCACTTCTGCAG
CCTGCAGGCGAAAGGAGCCTTTCAGGAAATCGATTGTGTATGTTTCTGACTTTTCAGGGTGG----TATGAGGATGAAGC
TGGGTGATTTAATTAGCATTTCAGACATAAATTCATATCTCATGCAGTTTTGATCGAATGTGAATATATGATGTTAGTAT
AGTAAGTATATAAGAGTATATCTCTCACCCGCAAAAAAAAAG--------------------------------------
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-------AGTATATCTCTACCTATCTATGCAAGTTCTTGGTCGGTTT-GTATATCTGCGAGGGAAAGGATGCATCCATCA
TTAGTAGCCCGAAAGCGCACGTAAAGCAAACGGAAAGCTGCTTGAAAGGCGTCCAGTAAAATAAACAGTGTTCTGAAATA
CTTGTTGGGAAAGCTATCATTGA------GCCTCTAGCCAGTCTCAGTAAACAAACATTA-GTTAAGGTTTGTGTCTCAC
TCTC--GATCATATCCTATGGTGCATTGGACAACCTAATGGACATCCCCTGCATTCGTAAAGCTGATCAAAGAGGCCGAT
ACATCATTCCATCGCTCCGCGCCTCCTCATCATTCTGCTCCCCTTTCGCCTCGCCACTACGAGAATTGACGTGGAAGCAA
AGCCTCACAGCCTTTGCTTGCTCGCTTGCGTACCTCTTCCAGTTCCACCTAGCTAGCTCATCGTCTATATAAACACAAGG
GGTGCGCAAGACACATACTGCACACTCATGTGACCTGCAAGATCACGCAGCTTGGCTAAAAACCATGGCGATGGCGGCGC
TGGTGGTGGTGCTCTCTCTCCTGATCCTGCCGACCGGGGAGGCGCAGGAGAGGCGCCCGGTGGAAGCGCACCCGCACGGG
CTGCCGTTCGAGAGCCCGCTGGCACTGTCCCCGGCGGCGTACGACTTCTTCCACCCCAGTGAGCACGCCCAGCGCGTGGC
CGGCGCCCCCGAGCTCGCGCCGCGCGGGCAGCCAAGGGGGTCGGTGGTCCGGGGCGCCGGCGCGTCCGCGGCGAGCGTGG
CGAGGGCCGACCACGAGGAAGGGGGCGTGGCGCCCGTCAACACGGCTCGACGTGGTGGAGCTGTCCGTGCGGGCGTGGTG
GCCGGCGTGTTCGTCGGAGCCGCGGTGGTGGTCTTGGCGGCTCTCGGGCTAGCGTACGCGGTGGCGCGGCGCCGCGTGGG
CGTCGCGCAAGGTGACGCTGAGGTGGCTAGCGGGCCGAAGTCGAATGCTTAATGGGCTGGATTAGGG-------------
----GTAG------CTTTGCGTGGGCCTAGAGAGTTAGGCCATAGGGGCGGGCTGGTAGTGTGTAAATTATCGGTGTTTC
ATCATCGAGCGACGGGAAAATGGTTACAGGCGA-----CTTCCACTGTATGAGCTCTCAAGCCTACGA------------
------CCGATCGTGCTGTGAACAATCATCGCGTACTAATATAAACCTCAGAGAACGCTTTTGCTCGAGCGAAGTGCAC-
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>chr1B_1
CGGCCATCCGGCACCGCTGGATGGGCCGCGACGACGACGGATCGGGGGCTGCAAATCATGCCCCTGCCGCACTTCTGCAG
CCTGCAGGCGAATGGAGCCTTTCAGGAAATCGATTGTGCATGTTTCTCACTTTTCAGGGTGGTATATATGAGGATGAAGC
TGGGTGATTA----AGCATTTCAGACATGAATTGATATCTCAAGCAGTTTTGATCGAATATGAATATATGATGATAGTAT
AGTATATA------------------------------------------------------------------------
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---------TATATCTCTACCTATCTATGCAAGTTCTTGGTCGGTTTTGTATATCTGCGAGGGAAAGGATGCATCCATCA
TTAGTAGCCCGAAAGCGCACGTAAAGCAAACGGAAAGCTGCTTGAAAGGCGTCCAGTAGAATAAACAGTGTTCTCAAATA
CTTGTTGGGAAAGCTGTCATTGAGCCTCTGCCTCTAGCCAGTCTCAGTAAACAAACATTAAGTTAAGGTTTGTGTCTCAC
TCTCTCGATCATATCCTGTGGTGCATTGGACAAC-TAATGGACATCCCCTGCATTTGTAAAGCTGATCAAAGAGGCCGAT
ACATCATTCCATCGCTCCGCACCTCCTCATCATTCTGCTCCCCTTTCGCCTCGCCACTACGAGAATTGACGTGGAAGCAA
AGCCTCACAGCCTTTGCTTGCTCGCTTGCGTACCTCTTCCA------C----CTAGCTCTTCGTCTATATAAACACAAGG
GGTGCTCAAGATGCATACTGCACACTCATGTGACCTGCAAGATCACGCAGCTTGGCTAAAAACCATGGCGATGGCGGCGT
TGGTGGTG---CTCTCTCTGCTGCTCCTGCCCACCGGGGAGGCGCAGGAGAGGCGCCCGGTGGAGGCGCACCCGCACGGG
CTGCCGTTCGAGAGCCCGCTGGCGCTGTCGCCGGCGGCGTACGAGTTCTTCCACCCCAGTGAGCACGCCCAGCGCGTGGC
CGGCGCCCCCGAGCTCGCGCCGCGCGGGCAGCCGAGGGGGGCGGTGGTCCGGGGCGCCGGCGCGTCCGCGGCGAGCGTGG
CGAGGGCCGACCAGGAGGAAGGGGGCGTGGCGCCCGTGAACACGGCTCGACGAGGCGGAGCTGTCCGTGCGGGCGTGGTG
GCCGGCGTGTTCGTCGGGGCAGCGGTGGTGGTGTTGGCGGCTCTCGGGCTAGCGTACGCGGTGGCGCGGCGCCGCGTGGG
CGTCGCGCAAGGTGACGCTGAGGCGGCTAGCGCACCGAAGTCGAATGCTTAATGGGCTGGATTCGGTACGCACGCATGCG
TGTGGATGGATGGACTTTGCGTGGGCCTAGAGAGTTAGGCCATAGGGGCGGGCTGGTAGTGTGTAAATTATCAGTGTTTC
ATCGTCGAGCGACGGGAAAATGGTTGCAGGCGA-----CATCCACTGTCTGAGCTCTCAAGCCTACGG------------
------CCGATCGTGCTGTGAACAATCATCACGTACTAAT---AACCTCAGAGAACGCTTTTGTTCGAGTGAAATGCAC-
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>SNPs
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----------------S----------------------------------------S----------------------
--------------------------------------------------------------S-----------------
----SSSSSS-SSSSS-SSS-SSSSSSS--S-SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--------------------------------S------------S---------------------------
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----------------SS--------------------------------------------------------------
----------------------------------------------SS--------------------------------
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-----------------------S-------------------------------------------------S------
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-----------------------------------------S--------------------------------S-----
-----------------S-----SS-------------------------------------------------------
------------------------------------------S------------------------SSSS-S-S-SSSS
---S----------S----------------------------------------------------------S------
----------------S---SS-S-SSSSSS-SSSSSS---------------------------S--SSSSSSSSSSSS
SSSSSS-------------------------------------------------------------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_260
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AGTACCACCTTCGTCCTGGT------------------------------------------------------------
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>reverse_1916
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---------------------------------------------------------------------------CCCAC
CTCTTCTCCTAGGCT-----------------------------------------------------------------
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