>input_sequence_79248
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--------------------------------------------------ATGTACGCGCTCTCGCTCGAGGTCTGGGGC
GCCACGCCCGCCGTCGTCGCCCCGCCCCGGCGCGACCCGGTGCCCGACGTGGGCGCGGCGTCCACGGCGGCGACGGCGGC
GGTGGGGAGCAAGATGCCAGTCCCGCCGGTGCCGCGCGCTGC------------CCCTGCTCCTGCTAAGAAGAGGCGCT
GCGACGAGTACCCCGCGCTGGCGAGGGAGGCGGAGAGGCTGACGAGGGAGGCCCTGGAGCGCATCGACGACGTGACGGCG
TGGTCGCTGGAGATGAGGGCGAGCAAGAAGGAGCAGCGGCGTCTGCAGAGGACGAGGAAACAGTACCGGCAGCAGCAGCA
ACGCGCCGGCGGTGTGCCTGTGCCCGCCGGTGGGCGCGGCGAGGACGGGAGCAAGGAGCTGGCTAGCGTGATCGTGAAGC
TTGTTAGAGGCAACCATGGCCCCTCCTCAGCTGGGAACCAGC---AGAGATGA---------------------------
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>chr1B_1_TraesCS1B01G432100
TAGTAGAGGAGCTTGAATCTGACGGTGTTGCACAACAGATCGGGCGGCTGCGAGCAGACCGGCCAAAACATTCGGCCGGT
GCGCCGGCCCCTGGCGGTGCCCTAAGTTTTAACCATGTCACATTTGTGTCTGAGACTCTCGTGGTCTCTTCGCGTCTCCT
GCTGCTGGCTGCACAGGCAG---TTTGAAATGCTTGGGAGTACTACAGTCACGATGAGAGGCGAGTCCCATTGAAGGCTC
TGCGTGCAGATGCGCACTTAATA---TTTACCACTGCTCCTGTACTTATGAGCGTACTCTCCTCCG-----CTATCTTCA
ACCCACCTTTTGGCTACGTACTACAAGCTGTGCAAGATCTTGCTGTCGACTACAACTTGGAGATGG--------------
-------ACATGGAGGCAGTGCCGTCAGATTCAGATGCGCCCTGGCGGGGCGTGCTCAGAATCGC--CATCTTCACAAGC
TCAGCACCACACAAATGTAACGTACTGTTTGGCGCGAAACCGGC-CG-ATCGCGCGGCAAACCGAGAGCGCGCACCCGCG
CTTTCCAAAACAGCCA-GAGCCTCCTCCCGCCACACGGCCAGGGCCAACGAAACCT---GCCCGCTTGCCTTGCCTCCGT
CCACTCGCCATGGCCAGCGCGCCCCCGCCCTCCTCCTCCACCTCCGTCCGCCGCGCCGGCGCCGCCAACGCCCCCACCGC
AAACGAGCACCCAACGCCTGCGCCTGCCACCGCCTGCTCTGTTCGGCCGGT------------------GCCGGTCGACG
TCCGCCCACCGGCGGCACC------------------GGTGGACGGCAGCCGTCTGTCCGAGCAGGACGACGCGGTGATC
CTCCAGTCCCTCCGCGCCCACCTCTGGAGCCACGGCG--------------GCCGACCTCGTCGCCACCTTCTTCGGCCG
GCTCAGCAGGACGGACTACAGCCTCGGGGACGTGGAGGCCAAGATCCGGGCCCTGCGGCGCCGGTTCAGGGAGGCCGACG
CCGCGCTCTGCGCCGGCACCGGCTGCCCGGCCCCCGGGCACGGCCTCCGGATGTACGCGCTCTCGCTCGAGGTCTGGGGC
GCCACGCCCGCCGTCGTCGCCCCGCCCCGGCGCGACCCGGTGCCCGACGTGGGCGCGGCGTCCACGGCGGCGACGGCGGC
GGTGGGGAGCAAGATGCCAGTCCCGCCGGTGCCGCGCGCTGC------------CCCTGCTCCTGCTAAGAAGAGGCGCT
GCGACGAGTACCCCGCGCTGGCGAGGGAGGCGGAGAGGCTGACGAGGGAGGCCCTGGAGCGCATCGACGACGTGACGGCG
TGGTCGCTGGAGATGAGGGCGAGCAAGAAGGAGCAGCGGCGTCTGCAGAGGACGAGGAAACAGTACCGGCAGCAGCAGCA
ACGCGCCGGCGGTGTGCCTGTGCCCGCCGGTGGGCGCGGCGAGGACGGGAGCAAGGAGCTGGCTAGCGTGATCGTGAAGC
TTGTTAGAGGCAACCATGGCCCCTCCTCAGCTGGGAACCAGC---AGAGATGAAGC----AACTGTGATCTCTGAACTCG
CTTGCTGAATCTCAATTTTGCAGCCTGAATGTG------ATATGCTGCAGTGTGTTCTAGCTAGATAGAGTAGTTGTAGT
TTGTTCTAGCTAG-------ATAGAGATGTTTATTGTCATCATGTTCATTGTAATCAATCAGGTGATTGGACTTGAGATT
CCTTGGCTATCTCAAGGCTAACAGAATGCATCGAGTCTACTTCTCCTTCTGTTTGATGGGTCGACCTTGAACTGAATCTG
AAACAGAGGAGAGTGGTTTCTTCTGGATCGAGAAAGTAGAGGTTGATCCTACTACCCGGTGTGCTTACGGTTTACAAACA
TACTTTCATTGAGATGTTATGGATCTACAAAACAGATGAGGATGGATTCTTGTCGATCGAGAGAGTGGGGAATGATATGA
TATTACTAGGATGGCTGACACCTCTCATGTGGTCTGTTTAATAAACATGGTGGCATTCAGGTCTCAGGTTGCGGCGACAA
ACAAAATCAGGCAAGTCAGGTCTCAACCATGGCTTGTGACAAAGGTT---TAAGACACTAACAACACTTGACCAGGCATT
GTACCAATTGTATTACTCTGTGTA--------------TGCCAAGA-------ATGAACTCATATATTCTG---AAAGGA
CCCCATTCAAATACCAC--------------------------------TCTTCGGTTTATAACTGGCTGACAGATCAAG
TTGCAGGTTATTCCCACAGCATCGAATCCGGGCAACGAGCAACGCTATGAGCACGGCAACATCAAATTTATCCTGACAAG
AGAACCAAAATATTGTAGGGCTCAAGCATCTTCCCAAGAGTTACCAAATCAACTCAATTCATTCAGCAAGTACCGACGCA
AGTCGCAAGATGGAGACTGCAAACTGAAAACATAACTGACATTTAACACAACCTGTTTTTTTATTATT------------
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------------ATTATAGCTTCAGAGCTGGCCGGATGCACCAGGTGCTACATCGTGGCATTGATGTGCGAAGAGCAGAT
TCTTCGATGTGCTCATGTTCCAGTCATTGAGGA
>chr1D_103
TAC-----------------------------------------------------------------------------
-------------------------GTTTTAACCCTGTCGCATTTGTGCCTGAAACTCTCGTGTTCTCCTCGCTT--CCT
GCTGCTGGCAAGTGGCTAGCGACTTCGAAATGCTGGGGAGGACTACAGTCACGATAAGAGGCGAGTGCCACTGAAGGCTC
TGCGTGCAGATGCGCACTTAATAGTATTTACCACTGCTCCTGTACTTATTGGCGTACTCTCTCCGGTACTCCTATCTTCA
ACCCAACTTTTGG---------------TGCGCAAGATCTCGGTGTCGACGACGACTTGGAGATGG--------------
-------ACATGGAGGCAGTGCCGTAAGATTCAGATA-----TGCCGTGGCGTGCTCAGAATCGCGCCATCTTCAGAAGC
TCTGCAGCAGA-----GTCATGTAATGTTTGGCGCGAAAACGGC-CCAATTGCGCGGCAAACCGAAGACACGCACCCGCG
CTTTCCAAAACAGCCATGAGCCTCCTCCCGCCACACAGCCAGCGAGCCAACG--CT---GCCCG-----CTTGCCTCCAC
CCATTCGCCATGGCCAGCGCGCCC---------------------------------------------------ACTGC
AAGCGAGCACGCGCCGCCTGCGTCTGCCACCGCTC---------------CCGTCCCCGTTCCAGTCCGGCCGGTCGACC
TCCCCCCACCGGTGGTACCCGCCAGCACCGCCGCGCCGGTGGACGGCAGCCGTCTGTCCGAGCAGGACGAAGCGGTGGTC
CTCCAGTCCCTCCGGGCCCACCTCTGGAGCCACGGCGACCTCCCCCGCGGCGCCGACCTCGTCGACATCTTCTTCGGCCG
GCTCAGCAGGGCGGACTACAGCCTCTGGGACATCGAGGCCAAGATCCGGGCCCTGCGGCGCCGGTTCCGGGAGGCCGACG
CCGCGCTCTGCACCGGCACCGGCTGCCCGGCCCCCGGGCACGGCCTCCGGATGTACGCGCTCTCGCTCGAGGTCTGGGGC
GCCACGCCCGCCGTCGTTGCCCCGCCCCGGCGCGACCCGGTGCCCGACAAGGACGCGGCGTCCACGGCGGTGAC---GGC
GGTGGGGAACAGGATGCCTGTAACGCCGGTGCCGCGCGCTGCCC------CTGCCCCTGCTCCTGCTAAGAAGAGGCGCT
GCGAGGAGTACCCCGCGCTGGCGAGGGAGGCGGAGAGGCTGACGAGGGAGGCCCTGGAGCGCATCGACGACGTGACGGCG
TGGTCGCTGGAGATGGGGGCGAGCAAGAAGGAGCAGCGGCGTCTGCGGAGGATGAGGAAACAGTACCGGCAACAACAGCC
AGCCGGCGGC---------GTGCCCGGCGGTGGGCGCGCCGAGGGCGGGAGCAAGGAGCTGGCTAGCCTGATCGTGAAGC
TTCTTAGAGGCAACCATGGCC---CCTCAGCTGGGAACCAGA---GGAGATGAAGTTTC--------ATCTCTGAACTCC
CTTGCCGAATGCCAGTTCTGCAGCCTGAATGTG------ATATGCTGCAGTGTGTTCTAGCTAGATAGAGTAGGTGCAGT
TTGTGCAAGCATCCTTCAGTATGGAGATGTTTATTGTCATCATGTTCATTGTGATCAATCAGGTGATTGGACCTGAGTTT
CCTTGGCTATCTCAAAGCTAACGGAATGCATCTAGTCTACTTCTGCTTCTGTTTGAAGGGTCGACCTTGAACTGAATCTG
AAGCAGAGGAGAGTGGTTTCTTATGGATCGAGAGAGTAGAGGTTGATCCTACTACCCGGTGTGCTTACAATTTACAAACA
TACTATCAGTGAGATGTCATGGATCTAGAAGACAGAGGATGATAGATTCTTGTCGATCTAGACAGTGGGGAATGGTATAA
TACTGCTATGATGGCTGGTCTG---------------TTAATAAACATGGTGGCATTCAGGTGTCAGGTTGCGGCGACAA
ACAAAATCAGGCAAGTCAGGTCTCAACCATGGCATGTGACCAAGGTTTAATAAGACACTAACAGCACTTGGCCTGACATT
CTACCGATTGTATTACTCTGTGTA--------------TGGCAAGACCCAAGAATGAACTCCTATACTCTA---AAAGGA
TCCCATTCAAATATACCTCTCTTCGGTTTATAATTTTTTTTGAGGGAAATCTTCGGTTTATAATTGACTGACAGATCAAA
TTGCAGGTTATTCTCGCGGCGTTGAATCCGGGCAACGGGCAATGCTATGAGCACGGCAACATCAAATTTATGCTGACAAG
AGAACCAAAATATTGTAGCGTTCAAGCACTTTTTCAAGAGTCACCAAATCAATCAAATTCATTCGGCAAGTATCGA----
---CGCAAGATGGAGACTGCAGACTGAAAACATCACCGAAATT------------TGCACAACATAAATAACCCTATACA
GTTGCAACTAGGGCGAAACCGAGCATGTGAACCATGGTAATCTGAAGCATTTGTTGACAGGGCTTAAGAAACAGATGTTA
AAGCATACACAATGTCACATTTGTTGGCTCTGTGCACGAACCTGGCGAGAAGGGGAATGCAACACAGATCAAGGACACAA
AATGTCTGTTGTGCAGGAGAGCTGAGAAGGCGGTGCGCATCAACTTATCTGTGAAAGAAGTTTGGCGAGAAGTTGAGCTG
GAAGCAGTCAGATTAAAACTAAAACTGGAGTAGATTGACACAATGCATGAAATGCAATAATGGAGTGCTTGCGTGTACTC
TCTGAGTAGCAGCGCATACAGATTCTTACGTTCTGGTTGCAATGGTGGGTGGCATGTCTGAGGTAATCTGAGAGAGGTCA
GCTACCATTCCAATTACAGCTTCAGAGCTGGCCGGATGCACCAGGTGCTACATCGTGGCCTTGATGTGCAGAGAGCAGAT
TCTTCGATGT-----------------------
>chr1A_108
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---------------------------TTTAACCGTGTCGCATTTGTGCCTGAAACTCTTGTGCTCTCCTCGCTTCACCT
GCTGCTGGCAAGT----AGCGACTTCGAAGTGCTGGGGAGGACTACAGTCACGATGAGAGGCGAGTCCCATTGAAGGCTC
TGCATGCAGATACGCACTTAATAATATTTACCACTGCTCCTGTAGTACTTAGGCTAGTCATAGTGGGAGTAACTTAGCTA
CTAATATAGCGCACTTCAAAATTTTTTTGCTTATGTGGCAAGTAGTTAATAAGAACTAGTAACATAATATGTTACTAGTT
GTAGACTACATGGACGCCATGCTCTTAGATTTGAGT---------------------------------------GAAGC
TCAGCAGCAC------GTAATGCAATGTTTGGCGCGAAACCGGCGCCAATTGCGCGGCAAACCGAAGGCGCGCACCCGGG
CTTTCCAAAACAGCCA-CGCCCTCCTCCCGCCGCACAGCGCGAGGCAACGCTGCCCGCGGCCCG-----CTGACCTCCAT
CCGTTCGCCATGGCCAGCGCGCCC---------------------------------------------------ACTGC
AAGCCAGCACGCGCCGCCTGCGGCTGCCACCGCCGGCTCCTCCTCCACTTCCGTCCCCGTTCCAGTCCGGCCGGTCGGCC
CCAACCCACCGGTGGTACCCACCAGCACCGCCGCGCCGGTGGACGGCAGCCGTCTGTCGGAGCAGGACGACGCGGTGGTC
CTCCAGTCCCTGCGCGCCCACCTCTGGAGCCACGGCGGCCTCCCCCGCGGCGCCGACCTCGTGGGCATCTTCTTCGGCCG
GCTTAGCAGGACGGACTACAGCCTCGGGGACGTGGAGGCCAGGATCCGGGCCCTGCGGCGCCGGTTCCGGGAGGCCGACG
CCGCGCTCTGCGCCGGCACTGGCTGCCCGCCCCCTGGGCACGGCCTCCGGATGTACGCGCTCTCGCTCGAGGTCTGGGGC
GCCACGCCCGCCGTGGTCGCCCCTCCCCGGCGCGACCCGGTGCCCGACAAGGACGCAGCGTCCACGGCGGC---------
---GGGGAGCAATATGCCGTTGACGCCGGTGCCGCGCGCTGCCGCTGCCGCTGCCCCTGCCCCTGCTAAGAAGAGGCGCT
GCGAGGAGTATCCCGCGCTGGCGAGGGAGGCGGAGAGGCTGACGAGGGAGGCCCTGGAGCGCATCGACGACGTGACGGCG
TGGTCGTTGGAGATGAGGGCGAGCAAGAAGGAGCAGCGGCAGCTGCAGAGGATGAGGAAACAGTACCGACAGCAGCAGCA
CCGCGCCGGCGGTGTGCCTGTGCCCGGCGATGGGCGCGCCGAGGACGGGAGCAAGGAGCTGGCTAGCGTGATCGTGAAGC
TTCTTAGAGGCAACCATGGCCCCTCCTCAGCTGGGAACTAGTAGTAGAGATGAAGTAACTAACTGTGATCTCTGAACTCG
CTTGCCGAATGTCAGTTCTGCAGCCTGAATGTGATGTGCATGTGCTGTAGTGTGTTCTAGCTAGATAGAGTAGGACTAG-
--------------TTCAGTATGGAGATGTTCATTGTCATCATGTTCATTGTGATCAATCAGGTGATTGGACTTGAGTTT
TCTTGGCTAT-TCAAGGCTAACGGAATGCATCTAGTCTACTTCTGCTTCTGTTTGAAGGGTCGACCTTGAACTGAACCTG
AAATAGAGGAGAATGGTTTCTTATGGATCGAGAGAGTAGAGATTGATCCTACTACCTGGTGTGCTTACGATTTACATACA
TATTATCAGTGAGATGTCATGGATCTAGAAAACAAACGGAGA-GGATTCTTGTCGATCTAGACAGTGGGGAATGGTATAA
TACTGCTATGATGGCTGGTCTG---------------TTAATAAACATGGTGGCATTCAGGTGTCAGGTTGCGGCGTCAA
ACAAAATCAGACAAGTCAGGTCTCAACCATGGCACGTGACCAAGGTTTAAGAA---ACTAACAGCACTTGGCCTGACATT
CTGCCGATTGTATTACTCTGTGTATGGCAAGCCCGCGCTGGCAAGACCCAAGAATGAACTCCTATCATCTGATGAAAGGA
TCCCATTCAGATACCAC--------------------------------TCTTCGGTTTATAACTGACTGACAGATCAAG
TTGGAGGTTATTCTCTCAGCGTCGAATCCGGGCAACGGGCAATGCTATGATCACGACAAAATCAAATTTATCCTGACAAG
AGAACCAAAATATTGTAGCCCTCAAGCATTTTCCCAAGAGTTACCAAATCAACCCAATTCATTCAGCAAGTACCGA----
---CGCAAGATGGAGACCGCAGACTGAAGACATCACTGAAATTTG-CACAACCTGTGCACAACATAAATAACCCTATACA
GTCGCGACTAGGGCGAAACCGAGCATGTGAACCATGGTAATCCGAAGCATTTGTTGACAGGGCTTAAGAAACAGATGTTA
AAGCATACACAACGGCACATTTGTTGGCTCTGTGCACGAACCTGGCGAGAAGGGGAATGCAACACAGATCGAGGACACAA
AATGTCTGTTGTGCAGGACAGCTGAGGAGGCGGTGCGCATCAACTTGCCTGTGAAAGAAGTTTGGCGAGAAGTTGAGCTC
TGAGCAGGCAGATTAAAACTAAAACTGGAGTAGATTGACTCAATGCATGAAATGAAATAATGGAGT--------------
-------AGCAGCGCATACATATTCTTACGTTCTGGTGGCAATGGTGGGTGGCATGTCTGAGGTAATCTGAGAGAGGTCA
GCTACCATTCCAATTACAGCTTCAGAGCTGGCCGGATGCACCAGGTGCTACATCGTGGCCTTGACGTGTAGAGAGCAGAT
TCTTCGATGT----ATGTTCTAGTCATTGAGGA
>chr3B_567
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-------------------------------------------GCCAGCGAAACCT---GCCCG-----CTTGCCTCCAC
CCGCTCGTCATGGCCAGCACGCCCCCGATCTCCGCCTCCACCTCCGTCCGCCGCGCCGGCGCCGCCACCGCTCCCGCCGC
AAATGGGCACCCAACGCCTGCGGCT---------------------------------------GTTCGGCCGGTCGACG
TCCGCCCACCAGCGGCGCC------CACCGCCGCGCCGGTGGACGGCAGCCATCTGTCCGAGCAGGACGACGCGGTGATC
CTCCAGTCCCTCCACGCCCACCTCTGGAGCCACGGCGACCTCCCCCGCGGCGCCGACCTCGTCGCCCCCTTCTTCGGCCG
GCTCAGCAGGACGGACTACAGCCTCGGGGACGTCGAGGCCAAGATCCGGGCCCTGCGGCGCCGGTTCAGGGAGGCCGACG
CCGCGCTCTGCGCAGGCACCGGCTGCCGGGCCCCCGGGCACGGCCTCCGGATGTACGCGCTCTCGCTCGAGGTCTGGGGC
GCCACGCCCGCCGTCGTCGCCCCGCCCTGGCGCGACCCGGTGCCCGACGTGGGCGCGGCGTCCACGGCGGCCACGGTGGC
GGTGGGGAGCAGGATGCCAGTCACGCCGGTGCCATGCG------------CTGCCGCTGCTCCTGCTAAGAAGAAGCGCT
GCGAGGAGTATCCGGCGCTGGCGAGGGAGGCGGAGAGGCTGACGAGGGAGGCCCTGGA----------------------
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>chr3B_567
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-------------------------------------------GCCAGCGAAACCT---GCCCG-----CTTGCCTCCAC
CCGCTCGCCATGGCCAGCGCGCCCCCGATCTCCGCCTCCACCTCCGTCCGCCGCACCGGCGCCGCCACCGCTCCCGCCGC
AAACGGGCACCCAACGCCTGCGGCT---------------------------------------GTTCGGCCGGTCGACG
TCCGCCCACCAGCGGCGCC------CACCGCCGCGCCGGTGGAAGGCAGCCATCTGTCCGAGCAGGACGACGCGGTGATC
CTCCAGTCCCTCCACGCCCACCTCTGGAGCCACGGCGACCTCCCCCGCGGCGCCGACCTCGTCGCCCCCTTCTTCGGCCG
GCTCAGCAGGACGGACTACAGCCTCGGGGACGTCGAGGCCAAGATCCGGGCCCTGCGGCGCCGGTTCAGGGAGGTCGACG
CCGCGCTCTGCGCAGGCACCGGTTGCCCGGCCCCCGGGCACGGCCTCCGGATGTACGCGCTCTTGCTCGAGGTCTGGGGC
GCCACGCCCGCCGTCGTCGCCCCGCCCCGGCGCGACCCGGTGCCCGACGTGGGCGCGGCGGCCA---------CGGTGGC
GGTGGGGACCAGGATGCCAGTCACGCCGGTGCCATGCG------------CTGCCGCTGCTCCTGCTAAGAAGAAGCGCT
GCGAAGAGTATCCGGCGCTGGCGAGGGAGGCGGAGAGGCTGACGAGGGAGGCCCTGGACCGCAACG--------------
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>SNPs
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS---------S----S--------S----S---------S----S----S--S---
---------SSSSSSSSSSS-----S--------S-----S---------------------------------------
-------------------------------------------------S-----------SS-S---------------
-----S---------S-SS-S-SSSSSS------------S-S-------S-----------------------------
-------------------------S----------SSSSSS--S--S---------------------------S----
------S----SSSSS----S---S---------------------S---S--------------SS-------------
------------------------------------S-----S---------------------SSSSS---------S-
---------------------------SS----S---------------------------------S---S--------
----------------------S-----------S----SSSSSSSS-SSS-----------------------------
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----------------------------------------------------------------------------S---
----------------------S---------------------------------------------------------
----S---------------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------S-----------S-----------------------------------------
--S--------------------------------------S-------------S------------------------
-----S----S---S--S-------------------------------------------------------S------
----S-S---SSS---------S-----------------------------S------------------------S--
----------------------S---------S-----------S-----------S-----------------------
----------------------S----------S-----------------------------------S----------
----S---S--------S---------S--------S--S------------------S---S-----------S---S-
--S-S---S--------SSSSSSSSSSSSSSSSSSSS-------------------------S-----------------
---------------------------------S------S----------------------S------S--S-S----
S----S----------------------------------S--------------------S----S-------------
S-----------------------------------------------------------------S-------------
-------------S-S----S----------------S----S-------------------------------------
------------------S----------S-----------------------S----------------------SSSS
SSS------------------S-----------S-----S----SS----------SSSSSSSS--SS------------
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----------------S------------------------------------------S---------SS---------
----------SSSS------S------------
>forward_74
------------------------------------------------------CAGACCGGCCAAAACATTCG------
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>reverse_1413
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----------------------------------------------------CGAGGAAACAGTACCGGCAG--------
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>forward_339
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-------------------------------------------------------------------------------A
ACCCACCTTTTGGCTACGT-------------------------------------------------------------
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>reverse_2481
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AGTCGCAAGATGGAGACTGC------------------------------------------------------------
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