>input_sequence_79220
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----------------ATGGGGCGCGCGCCGTGCTGCGACAAGGCGAGCGTGAAGAGGGGCCCGTGGGCGCCGGAGGAGG
ACGAGCTGCTGCGGAGCTACGTCCGGAGCCACGGCGCCGTCGGCAACTGGATCGCGCTCCCGCAGAAAGCAGGTACGTGC
GTACGTGTAGCCGCGGCGCGTGCTGCAGCAATCGCCGCCCCGGCCGGCGCTAGCCTGGCCTGCCGGTGCGGCGGTGCCGG
GGAAGGACTAGATAGGGATCGATCGCTGCCGGCCGGCCGGCGTCGTCCTTTTGTGGTTCGAGGA----------------
--GCTTCCTAATT----TCCCATGGTTGCTAAGCTTTGATTCGTGCGCGCGCAGGGCTTAACCGGTGCGGCAAGAGCTGC
CGGCTGAGGTGGCTCAACTACCTCCGGCCGGACATCAAGCACGGCGGCTACACCGAGCAGGAGGACATGGTCATCTGCTC
CCTCTACAACTCCATCGGAAGCAGGTAA----------------------------------------------------
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--
>chr3A_1_TraesCS3A01G264900
AGTAGATTTCAGAGATTGATCAGCTTGGCTATACTGCCGCGGCGAGAATATTGGTGCAGTTCGGGGTGCGCCATGGCTCG
CTCACCTGCTCCCCGTTCG-ATCGGTTTCAGCCCTGCGTCAGTCTGACTCTGAAACTGGATCGGATCCGTGACCGGGTGC
GACATTTCATCAGAGTTTCAGTGCCACCACACGCGGGATCGATCGGGGGCGAAGCCATGACGTCCGCCAAGAAACGCGGA
GAAGAAGCTCAGGCGGCCGCTACTACCCACGCGTCTTCCATCTGATCGATCCACTGAAGGGAAACCCCGAAATGTGGAGC
ACATTTGGCACGAAACGCAAACGGGCCGCACCGCAGCTCCCCAGATGGATTTTTCTAAGCACATCTCCTCCGCGTGACCG
A----------GCAACAAGTGGCCGGTCGAT----CGTCTCGCGCACAAGTACAGAGGGAGGAATTATA---TATGACCG
ATGCCCACTGACGCCCAGAAGTAGAAGAGAAGCGACCCCCGAAATTAGATGGCAGTCAACAGCAGCAGCCCGATAATACG
CGCGCGAAACCAAAATTTATTTGGAAA----AATACGGCCACGGAGCGGGACAATGCTACGGTCGAGGGGAGAGAGACAG
AGACGGCGTCGTCGGGATAATGGTCGTACCACGTAGGTACGTAC---GCGGCCCCACCT-CCACCCACCCAAGCCCCCTG
ATTGCTCAGACGCCCGGTATAAAAGGCGGCGCGCCCCCTCC-CTGCAAGCCTACTAGC-----CTTGTCTGCCTTCCATC
TGCTGCG--------CTGCTGCAACACCGCGAGTCCACAACGCACAGCACCACCCAC----ACCGACCCAGCTCGCCGCC
CGCTGC----AGGAAGGTTTGATCAAT----C---CATACGCCCTGCCTCCGTGCCGCGGCAGCGACGAGAGGCCTCCTT
CCTGCTCGCGCGCGGGCCGGCCTGTGTTTTCTTGGGCGGATTTAGGCGGGGAATTCGGCGGCGTGGTGGTGG-TAGAGCG
AGAGGGACCAGCAGGCATGGGGCGCGCGCCGTGCTGCGACAAGGCGAGCGTGAAGAGGGGCCCGTGGGCGCCGGAGGAGG
ACGAGCTGCTGCGGAGCTACGTCCGGAGCCACGGCGCCGTCGGCAACTGGATCGCGCTCCCGCAGAAAGCAGGTACGTGC
GTACGTGTAGCCGCGGCGCGTGCTGCAGCAATCGCCGCCCCGGCCGGCGCTAGCCTGGCCTGCCGGTGCGGCGGTGCCGG
GGAAGGACTAGATAGGGATCGATCGCTGCCGGCCGGCCGGCGTCGTCCTTTTGTGGTTCGAGGA----------------
--GCTTCCTAATT----TCCCATGGTTGCTAAGCTTTGATTCGTGCGCGCGCAGGGCTTAACCGGTGCGGCAAGAGCTGC
CGGCTGAGGTGGCTCAACTACCTCCGGCCGGACATCAAGCACGGCGGCTACACCGAGCAGGAGGACATGGTCATCTGCTC
CCTCTACAACTCCATCGGAAGCAGGTAAACCGATTTAGCTGAGCGCATGTGCACTGAATCGCATGCTGATTCCAAAGCGT
CCCGTCAGATTTGTTTGTAGCTGCCACTCCTGCAGTATTGTCACGTAATTGACTGATCGTGTCTCTCTG---GTGTGTGT
GCCCGACCTGCAGGTGGTCTATCATCGCGTCCAAGCTTCCCGGCAGGACGGACAACGACGTCAAGAACTACTGGAACACC
AAGCTCAAGAAGAAGGCCATGGCCATGCACCAG---CAGCAGCAGTACCACCACCACCACGGCACCGCCGCCCGGGGACA
TGCCCGCGGCGCGACGATCGCCACGCCACCGCCCGCCCCGCAGAGCCAATGCGCATCGTACATGCAGCCGTCGCCCGCGT
CCGCCTCGTCCGCCGTCACCACGGCGAGCGGCGACGCGGCCAGCTTCGGCGCCATGTACTCCCCGTCCCACCAGGCCGCG
CCACTCGCTCACTACAACGTCAACGCGGCGGCGCCGCTCGCCGAATTCCCGGCCATGCCGACGCCGGCCGCCGCCAACAG
CTGGGCCATCAACATGGCCTTCGAGGACATGTTCTTGCCCGAGCTGGTCGGGGGCGGCGACTTCTCCCAGGCGGACCTGT
TCGGCGGGTTCGGGGCGTTGCTGCTGCAAGCGCAAGACAGCAGGGCGCAATCGTCCCTGCAGGAGCTCTCCGCGTGCTAC
TTCCCCAACGCGCAGGCGGAGATGTGGGCGGCCGACGCCGACCACGTCAACGTCAAGCCGCCGGGCGCCGGCCTGTGCCC
CAGCCTGACATGAGAAACAAAACCAAGC----CACTAATGTCAGCGCATCCATGCGCAAGATGTTCATGCC----TAGTC
GTCGATCGCCGTAGCTGCTGGCTGGCTGGCTGGCGCCGCCTTGCCCCTGTTAATTTTCTGTGTCCATGAGATGGATCATT
ACATGTACATTATCTTATCCGCCACTCCACTGCTATGTCATACTCCCTCCGTTCCAAAATATAGCGCGCCCACGCTTTTC
GA
>chr3D_81
--------------------------------------------------------------------------------
CTCAACTGCTCCCCTTTGGAATCGGTTTCAGCCCTGCGTCAGTTTGACTCTGAAACTGGA----ATCCGTGACCGGGTGC
GACATTTCATCAGAATTTCAGTGCCACCACACACGGGATCTGGAGCTAGCGAAGGCATGACGTCCGCCAAGAAACGCAGG
---GAAGCTCAGGCGGCCGCTAA---CCACGCGTCTTCCATCTGATCCATCCACTGAAAGAACACCCCGAAATGTGGAGC
ACATTTGGCACGAAACGCAGACGGGCCGCATAGCAGCTTCCCAGATGGATTTTTCTAAGGGCATCTCCTCCGCGTGACCG
ACTAAAGCCGAGCAACAAGTG----GTCGAT----CGTCTCGCGCACAAGTACAGACGGAGGAATTATAGT---------
ATGACCACTGACGCCCAGAAGTAGAAGAGAAGCGACCCCCGAAATTAGATGGCAGTCAACAGCAGCAACCCGATAATACG
CGCGCGAAACCAAATTTATTTCATTTTTTGGAATACGGCCACGGAGAGGGACAATGCTACGGTCGAGGGGGGAGAGACAG
AGACGGCGTCGTCGCGATAATGGTCGTACCACGTAGGTACGTAC---GCGGCTCCACCCCCCACCCACCCAACCCCCCTG
ATTGCTCAGACGCCCAGTATAAAAC---GCGCGCCCCCTCCA------------TAGC-----CTTGGCTGCCTTCCATC
TGCTGCG--------CTGC---AACACCGCGAGTCCGCATCGCACAGCACCACCCGC----AC--ACCCAGCTCGCCGCC
CGCTGCGCGCAGGAAGGTCCGATCCGATCATCCATCATACGCCCTAT---CGTGCCGAAGCAGCGACGAGAGGCTTCCGC
GCCACGCCGCAACAGAG-GGCGTGTGTTTGTTTGGGCGGATTTCGGCGGGGAATTCGGCGGCGTGGTGGTGG-TAGAGCG
AGAGGGAGCAGCAGACATGGGGCGCGCGCCGTGCTGCGACAAGGCGAGCGTGAAGAGGGGGCCGTGGTCGCCGGAGGAGG
ACGAGCTGCTGCGGAGCTACGTCCGGAGCCACGGCGCCGTCGGTAACTGGATCGCGCTCCCGCAGAAAGCAGGTACGT--
--ACGTGTGGCCGCGGCGCGTGCTGCAGTAATCGA---CCTGCCCGGAGCTAGCCTAGCCTGC--------CGGTGCCGG
GGACGGACTAGATAGGGATCGATCGCTGCA----GGCCGGCGTCGTCCTTTTGCAGTTCGAGGA----------------
--GCTTCCTAATT----TTCCATGGTTGCTAAAGCTTTGA-CGTGCGCGCGCAGGGCTTAACCGGTGCGGCAAGAGCTGC
CGGCTGAGGTGGCTCAACTATCTCCGGCCGGACATCAAGCACGGCGGCTACACCGAGCAGGAGGACATGGTCATCTGCTC
CCTCTACAACTCCATCGGAAGCAGGTAAAACGATTTAGCTGAGCGCATATGCACTGAATCGCATGCGGATTCCCAAGCGT
CCCGTCAGATTTGTTTGTAGCTGCCACTCCTGCAGTA-TGTCACGTAATTGACTGATCGT----CTCTCTCTGTGTGCGT
GCCCAACCTGCAGGTGGTCTATCATCGCGTCCAAGCTTCCCGGCAGGACGGACAACGACGTCAAGAACTACTGGAACACC
AAGCTCAAGAAGAAGGCCATGGCCATGCACCACCACCAGCAGCAGCACTACCACCACCATGGCACCGCCGGCCGGGGACA
TGCCGGCGGCGCGACGATCGCCACGCCACCGCCCGCCCCGCAGAGCCAATGCGCATCATACATGCAGCCGTCGCCCGCGT
CCGCCTCGTCCGCCGTCACCACCGCGAGCGGCGACGCGGGCAGCTTCGGCGCCATGTACTCCCCATCCCACCAGGCCGCG
CCACTCGGTCACTACAACGTCAACACCGCGGCGCCGCTCGCCGAATTCTCGGCCATGCCGACGCCGGCCGCCGCCAACAG
CTGGGCCATCAACATGGCCTTCGAGGACATGTTCTTGCCCGAGCTCGTCGGGGGCGGGGACTTCTCCCAGGCGGACCTGT
TCGGCGGGTTCGGGGCGTCGCTGCTGCAAGCGCAAGACAGCAGGGCGCAATCGTCCCTGCAGGAGCTCTCCGCCTGCTAC
TTCCCCAACGCGCAGGCGGAGATGTGGGCGGCCGCCGCCGACCACGTCAACGTCAAGCCGCCGGGCGCCGGCCTGTGCCC
CAGCCTGACATGAGAAACAAAACCAAGCCACGCACTAATGTCACCGCATCCATGCGCAAGATGTTCATGCCGAGCTAGTC
GTCGGTCTCCGTAGTTGCAGGC----TGGCTGGCGCCGCCTTGCCCCTCTTCATTTTCTGTGTCCATGAGATGGATCATT
ACATGTACATTATCTTATCCGCCACT------------------------------------------------------
--
>chr3B_367
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-----------------------------------------------GATTTTTCTAAGCACATCTCCTCCGCGTGACCG
AC----------CAACAAGTGGCCGATCGATCGTCCGTCTCGCGCACAAGTACAGATGGAGGTTCATTATAGTATGACCA
CTGCCCACTGACGCCCAGAAGTAGAAGAGAAGCGACCCCCGAAATTAGATGGCAGTCAACAGCAGCAACCCGATAATACG
CGCGCGAAACCAAAATTTATTTGAAAA----AATACGTCCACGGAGCGGGACAATACTACGGTCGAGGGGAGAGAGACAG
AGACGGCGTCGTCGGGATAATGGTCGTACCACGTAGGTACGTACTACGCGGCCCCACCCCCCACCCACCCGACCCCCCTG
ATTGCTCGGACGCCCAGTATAAAAC---GCGCGCTCCCTCCCCTGCAAGCCTACTAGCCTTGGCTTTGCTGCCTTCCATC
TGCTGCGCTGCAAGCCTGC---AACACCGCGAGTCCGCATCGCACGGCACCACCCGCACCAAC--ACCCAGCTCGCCGCT
GCGCCC----AGGAAACTTTGATCGATCCATC---CATACGCCCTGTCGTGCCGCAGCGGCAGCAACGAGAGGCTTCCGC
GCCGCGCCTCAACGGCAGGCTCGTGTTC-GTTTCGCCGGATTTCGGTGGGGAATTCGGCGGCGTGGTGATAGCTAGAGCG
AGAGGGAGCAGCAGGCATGGGGCGCGCGCCGTGCTGCGACAAGGCGAGCGTGAAGAGGGGCCCGTGGTCGCCGGAGGAGG
ACGAGCTGCTGCGGAGCTACGTCCGGAGCCACGGCGCCGTCAGCAACTGGATCGCGCTCCCGCAGAAAGCAGGTACGT--
--ACA-----------CGCGTGCTGCAGTAATCGCCGC----GCCGGAGCCAGCCTAGCCTGC--------CGGTGCCGG
GGACGGACTAGATAGGGGTCGATCGCTGCCGG--------CGGCGTCCTTTGTTAATTCGAGGACATAAAGCCGGCCATC
GAGCTTCCTGATTTTCCTTCCATGGTTGCTAAGCTTTGACTCGTGCGCGCGCAGGGCTTAACCGGTGCGGCAAGAGCTGC
CGGCTGAGGTGGCTCAACTACCTCCGGCCGGACATCAAGCACGGCGGCTACACCGAGCAGGAGGACATGGTCATCTGCTC
CCTCTACAACTCCATCGGAAGCAGGTAAACTGATTTGGCTGAGCGCATATGCACTGAATCGCATGCGGATTCCGAAGCGC
CCCGTCGGATTTGTTTGTAGCTGCCATTCCTGCAGTG-TGTCACGTAATTGACTGATCGT----CTCTG---GTGTGTGT
GCCCGACCTGCAGGTGGTCTATCATCGCATCCAAGCTTCCCGGCAGGACGGACAACGACGTCAAGAACTACTGGAACACC
AAGCTCAAGAAGAAGGCCATGGCCATGCA---CCACCAGCAGCAGCACTACCACCACCACGGCACCGCCGGCCGGGGACA
TGCCCGCGCTGCGACGATCGCCACGCCACCGCCCGCTCCGCAGAGCCAATGCGCATCATACATGCAGCCCTCGCCCGCGT
CCGCCTCGTCCGCCGTCACCACCGCGAGCGGCGACGCGGCCAGCTTCGGCGCCATGTACTCCCCGTCTCACCAGGCTGCG
CCACTCGGTCACTACAACGTCAACGCGGCGGCGCCGCTTGCCGAATTCTCGGCCATGCCGACGCCGGCCGCGGCCAACAG
TTGGGCCATCAACATGGCCTTCGAGGACATGTTCTTGCCCGAGCTCGTCGGGGGCGGGGACTTCTCCCAGGCGGACCTGT
TCGGCGGGTTCGGGGCGTCGCTGCTGCAAGCGCAAGACAGCAGGGCGCAATCGTCCCTGCAGGAGCTCTCCGCGTGCTAC
TTCCCCAACGCGCAGGCGGAGATGTGGGCGGCCGCCGCCGACCACGTCAACGTCAAGTCGCCGGGCGCCGGCCTGTGCCC
CAGCCTGACATGAGAAACAAAACCAAGA----CACTAATGTCGCCGCATCCATGCGCAAGATGTCCATGCC----TAGTC
GTCGATGGCTGTAGTTGCTGGCTGCCTGGCTGGCGCCGCCTTGCCCCTGTTAATTTTCTGTGTCCATGAGATGGATTATT
ACATGTACATTATCTTATCCGCCACTCCACTGCTATGTCATA--------------------------------------
--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
----S---------S--S-------------------------S----------------SSSS----------------
--------------S-----------------S-------SSSS-SSS------S----------------------S-S
SSS-------------------SSSS---------------------S----------S-S-S-----------------
-------------------S----------SS------S-----------------------------------------
--------------------------------------------------------S----------------------S
-------------------------------------------------------------------S------------
-----------------------S--------------------------------------------------------
----------------------------------------------------------S-------------S-------
---------------S--------SSSS---------------------------------------S------------
-------------------SSS--------------S--S---------------S-------SS---------------
------------------------S---------------------S-SS------------------------S---SS
S-S--S-SSSSS---SSS-----------SS------------S------------------------------------
-------S-----------------------------------------------------------S------------
------------------------------------------------------------------------------SS
SS------S-------------------S-----------S------S--------S------SSSSSSSS---------
---S----------------------------SS--------------------S-------------------------
------------------S--------------------S----------------------------------------
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------------------------------------------------S-----------------S------S------
-------------------------------------S----------------------SSSS----------------
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--------------------------------S------------S--S---------------------S---------
---------------------------------------------------------S----------------------
----------------------S---------------------------------------------------------
-------S----------------------------------------S-------------------------------
---------------------------------------------S-----------S----------------------
------------------S-------------------------------------------------------------
----------------------------------S---------------------------------------------
-------------------------------------------S------------------------------------
--------------S---------S-------------------------------------------------------
------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_340
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ACATTTGGCACGAAACGCAA------------------------------------------------------------
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--
>reverse_2008
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-------CTCACTACAACGTCAACGCG-----------------------------------------------------
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--
