>input_sequence_79204
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----------------------------------------ATGACCGAGGAAGGATCACCTAAAAAAAAAATGACCGAGG
AAGGCAGGCACATCGCCGGC---GAGCCCATCCGGCCGCCGCGGCTGGAGGATGCGGACCTGGAGGACTGCGCGCTCCCG
ACGGAGTCCATCGCCGAGGCTTTCTCCCTTGCAGCGTTGGCCGTCTCCTCCCGCCTCCCCCACCTCCCCCTTTCCGATGA
CGAGGACGACGA---------TGACCCGCTCGCGCCTCGTGGAGGCTGCGTGGAGGACGCGGGACCCACCTGCGGGGTCA
TTCCCAACGCCCTTGTTGGCGCGAGGGGCGGCAGTGACGGCGGCGCCGACGAGGTC------------------------
---------------------GTCGTCGGGCGCGGAGAC---------AGG---GTTGTTGTGATCGGCCAAGAGCTGGG
ACAGGAGAAGGGTTGCGCCGAGGGGACCGGAGAAGGAGAGCAGCGGAAGGAGGAGG---ATGA---GATTGTGGAGAAGG
CTGTCTTGGTGAGAGATTTCGCGTGA------------------------------------------------------
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>chr7D_1_TraesCS7D01G391300
GATTTTTTTAGTGATGCAATTCCCGTGAAATAGGGGAGCAACAAATTAAGGGATACCCCTTGGAGTGCTACGCAAAGGTC
TTTTTTGGCCTAAGAGGTGCGCCCAGCTGCTGCCATGTATTAGGCGCTGACGCACCCTCTGGATTTTGGCTTTTTATACG
CGTTTCTGGGTTTTGTATGATTTCTTTTTGTCCTTTGGTTTTGTTTGGTTTGTCCTAGGTTTTGATGGATTTTTTGAAAG
CGGTGCTTTTCCACGAGCATGTGCTTCTGAGAGAAGCGCTTTTCGAAAAGAGAAAAGCACAACCCATTCTTTCACGAGAA
GCACAATTATGCTTTTCTACGTGCTTCCTGAGAAAAGGAAAAGGTACAACATATGCTTTCAAGAGAAACACAACCGTGCC
TTTTGAAAATAGAAAAAGCACAATTTGTGCTTTCGCGCCCAAAAGGGAAAATCACAATTGTGATTGTGAAAAAATATATG
AAAATGCACAACTATGCTTCTGGGTTTTTTTTTCCGGTTGTGTTTTTTCTGGTTTTCAGACTTTTTCAGTTATGTACTTT
TATTATTATTTGTCTCCATTTCTTTTCCAATTTCTTTTATTCGCTTTGTCATGGAAAAAATTTGTCGACACGACATCTGG
TTTCAAAGATATTGACGCGAGAACGCCAACGATGAAAACGGTTCATGATTTGGGCGCATGATTCAAAACATAAATCATTT
TAAAGAAAAACAAATGTACGAATAAAAGAAAAGCTCTCAGATTACAACAAATGGTGTACATACAATGCATCGCTTGTCAG
CCCCAGAAAAGTGGAATGACAAAAAAATAAGTGGAATGACCTTTGCAACCCTTTGCAAGGGTACCCCTTAGTAATCTTGG
TGAGTGTGACTCAGTAACAGTTCATCATGGGCCCATTAATTATTACACTCAACGGCCCATGATCCGCATGTGCTTTTGCG
CTGTGAGCATACCCGCGTCCAGACCAGTCAGCGAAGCAAAATGACCGAGGAAGGATCACCTAAAAAAAAAATGACCGAGG
AAGGCAGGCACATCGCCGGC---GAGCCCATCCGGCCGCCGCGGCTGGAGGATGCGGACCTGGAGGACTGCGCGCTCCCG
ACGGAGTCCATCGCCGAGGCTTTCTCCCTTGCAGCGTTGGCCGTCTCCTCCCGCCTCCCCCACCTCCCCCTTTCCGATGA
CGAGGACGACGA---------TGACCCGCTCGCGCCTCGTGGAGGCTGCGTGGAGGACGCGGGACCCACCTGCGGGGTCA
TTCCCAACGCCCTTGTTGGCGCGAGGGGCGGCAGTGACGGCGGCGCCGACGAGGTC------------------------
---------------------GTCGTCGGGCGCGGAGAC---------AGG---GTTGTTGTGATCGGCCAAGAGCTGGG
ACAGGAGAAGGGTTGCGCCGAGGGGACCGGAGAAGGAGAGCAGCGGAAGGAGGAGG---ATGA---GATTGTGGAGAAGG
CTGTCTTGGTGAGAGATTTCGCGTGAGCTTTTCTTCTAGCTTCA------TGAGAAGATATCTCCCTAGTATTTGTTGTT
TCTTTGACTTGTAC--TAGATC----------------------------------------------------------
-------------------TTGATTCAACGATCAGATGACACTATGTTAGTCTCTTTGGTATGGTGGATTGGTGGCAAGC
TACTTAGCATCAACGGTATTCGACTTAGTGCGTTGCTGATGAAGTGATGATTGCTGCTGTTTTCCTGCTTGTTTTGTGCT
CGAAT-AGCGACATGCTCTTGTTCAAAG---TTAGTGACAAGCTAGTGGATTTGGCAAGATGCCAATGCAATTGATATTT
ATTGGCTGTCCTAAGT----------------------------------------------------------------
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--------TTAAGGGCAAATGATGCAAATGTGATTGTGT--CTGACATATAATGTGTCTTAGACTCTTAGTAGAGCTTGC
GAACAGATAAATGCCACAAGAAACCACTGGATTTGACATGGCATCAAATCATTTTAGAAG-----ATTCAGGAACATGCT
TTACCATTCCAGGGGAAAAGATTTCTTGCAGAAACCTTCCTCGATGGAT---TTAAGTGGGGAAATAATACAAGGCACCA
CTTATAAGAAAAATAAATAGAACAGAGCAGACCTTTTGTTGATTATGAACATGAT-------ATGTACCTTTTCAACAGG
ATCTGAAATTGGATTACAGACAAACTAACACCACTGCAATATACAGTGCCACTCTAGCGAACAAATCTAATGAAAGCTTT
TCTTATAAAATAGTTAGATGTGCTAAGTTCACTAGCAGATTA--------------------------------------
-----GTGTGCTGATATCTTGACGTAGCAGCAGATTATTGTGTCAAAGTGAATGGAGGCGTTGAAAAGGATGTTTGTGTC
CAGACATGAGATTATATATGT-----------------------------------------------------------
----------------------ATAGCTGAGTAACTAGTAAAATAGCTTGAAGGATTTT-CAACGTATAACATGGCCAA-
-----------AGTCATTTCATCTCATTGTTCTGCCTATATCTTTGCAGCCCTGCAGGTAGCTTTCATGCTTAAGTGTCT
TTTCTGCA--ACAAGATGAACTCTATGATTCAATTAATTTCTGGAAAAAAAATAAAGATAAAT-
>chr7A_1022
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-------------------------------------------------------------AAAAAAAAAAAGGCCGAGG
GCGGCAGGCACATCGCCGGC---GACCCCATCCGGCCGCCGCGGCTGGAGGATGCGGGACTGGAGGACTGCGCGCTCCCG
CAAGAGTCCATCGCCGAGGCTTTCTCCCTTGCAGCGTTGGCCGTTTCCTCCCGCCTCCCTCACCTCTCCCTCTCTGATGA
CGAGGACGAGGGGGAC------GACCCGCTCGCGCCTCGTGGAGGCTGCGTGGAGG---CGGGACCCACCTGCGGGGCCA
TTCCCGAATCCCTTGTTGGCGGAGGGCGCGGCAGTGAATGCCACGCCGACGAGGTCATGGTCGTCGC-------------
--------------------------CGGGCGCGGAGACGAGGAAGATAGGGTTGTTGTGGTCGTCGGCCAAGAGCTGGG
ACAGGAGAAGGGTTGCGCCGAGGGGACCAGAGAAGGAGAGCAGCGGAAGGTGGAGG---ATGG---GATTGTGGAGAAGG
CCATCTTGGTGAAAGATTTCGCGTGAGCTTTTCTTCTAGCTTGA------TGAGAAGACATCTCCCTAGTATTTGTTGTT
TCTTTGACTTGCAATGTATACC----------------------------------------------------------
-------------------TTGATTTTAAGATCAGATGACATTATGCTAATCTCTTTGGTACGGTGG--------CAAGT
TACTTAGCATCAACGGTATTCGACTCGGTGCATTGCTGAT--------GATTGCTGTTG-TTTCCTGCTTGATTTGTGCT
CGAATTAGCGACATGCTCTTGTTCAAAGAAGTTCGTGACAAGCTAGTGGTTTTGGCAAGCTGCAAATGCAACTGATATTT
ATTGGCTGTCCTAAGG----------------------------------------------------------------
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--------GTAAGGGGAAATGATGCAAATGTGATTGTGT--CTGACATACAATGTGTC--------TTAGTAGAGCTTGC
AAACAGAGAAATGCCACAAGAAACCACTGGATTTGACTTGGCATCAAATCTTTGCAGAAGATTATATTCAGAAACATGCT
TTACCATTTCAGGGGAAAAGATTTCTTGCAGAAACCTTCCTCGATGGATTCAGT-----GGGAAATAATAAAAGGCACCA
CTCATAAAAAAAATCAATAGAACAGAGCAGACTTCTTGTTGATTATGAACATGATATGGATCATGTACCTTTTCAACAGG
AACTGAAATTGGATTACGGACAAACTAACACCATTGCAATACACAGTGCCACTG--GCGAGCAAAACTAGTGGAAGATTT
TCTTATAAACTAATTAGATGTGCTAAGCTCACTAGCAGGTTA--------------------------------------
-----GTGTGCCGATATCCTGGCGTAGCAGCAGATTATTGTGTCAAAGTGAATGGAAGTGTTGAAAAGGATGTTTGTGTG
GAGACTTGAGAGTAGATATGT-----------------------------------------------------------
----------------------ATAGCTGAGTAACTAGTTAAATAGCTTGAAGGATTTTTCGACGTGTAACATGATCGA-
-----------GGTCATTGCATCTCTTTGTTCTGCCCATATATTTGCAGCCCTGCAGGTAGCTTTTATGCTTAAGTGTCT
TTTCTGCA--ACAAGATGAACTCTATGATTCAATTAATTTCTGAAAAAA---------------
>chr5A_1026
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-----------------------------------------------------------------AAAAAATGGCCGAGG
AGGGTAGGCACATCGCCGCCGGTGACCCCATCCGGCCGCCGCGGCTGGAGGATGCCGGCCTGGAGGACTGCGCGCTCCCG
CCGGAATCCATCGCCGAGGCTTTCTCCCTTGCGGCGTTGGCCGTCTCCTCCTGCCTCCCCAACCTCTTCCTCTCCGACGA
CGAGGACGAGGACGAGGGAGGTGACCCGCTCGCGCCTCGTGGAGGCTGCGTGGAGGACGCGGGACCCACCCGCGGGGCCA
TTCCCGACGCCCTTGTTGGCGCAGGGGGCGGCAGCGAGGGCGGCGCCGACGAGGTCGTGGTCGTCGGCGGCGGTGGCGGA
GGAGGCGGCGACGAGGTGGTAGTCGTCGGGCGCGGAGACGAGGAAGATAGG---GTTGTTGTGGTCGGAGAAGAGCTGGG
GCAGGAGAAGCGTTGCGGCAAGGGAACCAGAGAAGGAGAGCGCCGGAAGGAGGAGG---AGGAGGAGATGGTGGAGAAGG
CCATCTTGCTGGAAGATTTTGCGTGAGCTTTGTGAGCTTTTCCTTTAGCCTGATAAGATATTTCCCTTCC-----TTGTT
TGTTTGACTTGTAATGTAGTGAATCTCCCTATGAGGAAGGCAAGAGTGAATTTATCTCAGATGTAGTGTTTAATTTTAAG
ATCATTACTAATGTGGTGTTTGATATTAAGATCAGATGACAGTATGTTAGTCTCCAA---------------TGGCAAGC
TACTTAGCATCAATGGTATTCGATTTAGTGCACTGC--------TGATGATTGTTGCTGTTTTCCTGTTCGATT------
--------------------GTTCAAAGAAGTTAG-----------------TGACAAGCTGCGAATGCACCTGACATTA
TTGGTTGTTATGGACGCACCCCTGTCCATAGCTAGCTCTTTGTCGATACTCCAATCCTTCAGGAGTCCGTTAAGAGAGAC
CTGAAGGATTGGAGTATCGACAAAGAGCTAGCTATGGTCAGGGGTGCGTGGAAGCTTGCTATCCATGTGCCAGAGCCATG
AGTTGGTTGCGAGATCTTATGGGTTTCACCTCTAGCCTACCCCAACTTGTTTGGGACTAAAGGCTTTGTTGTTGTTGTTG
TTGTTGTTGTAAAGGGAAATGATGCAAATGTGATTGTGTGTCTGATATATAATGTGTC--------TTAGTAGGGCTTGC
AAACAGAGAAATGTTAGAAGAAACCACTGGATCTGACATGGCACCAAATCTTTCTAT-----------------------
------------GGAAAAATGTTTGGTGCAGAAACCTTCCTCCATAAATTTATGAAGTGGGAAAATAATACAAGGCATCA
CTCGT---AAAAATGAATAGAACAGAGCAGACTTTTTATTGATCATGAACATGAT-------TTGTACTTTTTCAACTGG
AACTGAAATTGGATTACTGATAAACTAACACCATTGCAGTACACAGTACCACTCTCATGAGGGAATTTAGTGAAAGCTTT
TCTG-TAAAATAATTAGATGTGCTCAGGTCACTAGCAGGTTAGACTTTTTTTTTGGTGTGTGGAAATAGCAGGTTAGACT
GGTTAGTGTGCTGATATCCCGGCCTATCAGACAATTGTTGTGTCAAAGTGAATGGAAGCGTTGAAAGGATGTATGAGTAT
GTTATATGGCCGGTTTAGCTAGGCCCAGCCGCCGACGCGCCCGATCATCGCCCCGTCCCACTCCATCCTTCCCCTACAAC
CTCCGGAGCAGATCCTTGTTCAATAGCTGAGTAACTAGTTAAATAGCTTGAAGGATTTTTCATCGTATAACATGGTCAAA
GATAGTCACTGAGTCATTTCATTTCATTGTTGTGCCTATATCTTTGCAGCCCTGCAGGTAGCTTCCATGCTTAATCGTCT
TATCTACAACACAAGATGAACTCAATGGTTCAAGTAAT--------------------------
>chr7B_1028
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-------------------------------------------------------------------AAAATGACCGAGG
AAGGAAGGCACATCGCCGGCGAG---CCCATCCGGCCGCCGCGGCTGGAGGATGCGGGCCTGGAGGACTGCGCGCTCCCA
CCGGAGTCCATCGCCAAGGCTTTCTCCCTTGCAGCGTGGGCCGTCTCCTCCCGCCTCCCCCACCTCCCCCTTTCCGATGA
CGAGGACGACGT---------TGACCCGCTAGCGCCTCGTGGAGGCTGCGTGGAGGACGCGGGACCCACCTACGGGGTCA
TTCCCGACGCCCTTGTTGGCGCGAGGGGCGGCAGTGACGGCGGCGCCGACGAGGTC------------------------
---------------------GTCGTCGGGCGCGGAGAC---------AGG---GTTGTTGTGATCGGCCAAGAGCTGGG
ACGGGATGAGGGGTGTGCCGAGGGGACCAGAGGCGGAGAGCACCGGAAGGAGGAGGGTGATGA---GATTGTGGAGAAAG
CCATCTTGGTGAAAGATTTCGCGTGAGCTTTTCTTCTAGCTTCA------TGAGAAGATATCTCCCTAGTATTTGTTGTT
TCTTTGACTTGTAATGTAGATC----------------------------------------------------------
-------------------TTGATTCAACGATCAGATGACACTATGTTAGTCTCTTTGGTATGGTGGATTGGTGGCAAGC
TACTTAGCATCAACGGTATTCGACTTAGCGCGTTGCTGATGAAGTGATGATTGCTGCTGTTTTCCTGCTTGATTTGTGCT
CGAAT-AGCGACATGCTCTTGTTCAAAG---TTAGTGACAAGCTAGTGGATTTGGCAAGCTGCAAATGCAACTGATATTT
ATTGGCTGTCCTAAGG----------------------------------------------------------------
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--------GTAAGGGCAAATGATGCAAATGTGATTGTGT--CTGACATATAATGTGTCTTAGACACTTAGTAGAGCTTGC
GAACAGATAAATGCCACAAGAAACCACTGGATTTGACATGGCATCTAATCATTTTAGAAC-----ATTCAGGAACATGCT
TTACCATTCCAGGGGAAAAGATTTCTTGCAGAAACCTTCGTCAATGGATTCATTAAGTGGGGAAATAATACAAGGCACCA
CTTATAAGAAAAATAAATAGAACAGAGCAGACGTTTTGTTGATTATGAACATGAT-------ATGTACCTTTTCAACAGG
AACTGAAATTGGATTACAGACAAACTAACACCATTGCAATATACAGTGCCACTCTAGCGAACAAATCTAATGAAAGCTTT
TCTTATAAAATAGTTAGATGTGCTAAGTTCACTAGCAGATTA--------------------------------------
-----GTGTGCTGATATCCTGACGTAGCAGCAGATTATTGTGCCAAAGTGAATGGAGGCGTTGAAAATGATGTTTGTGTC
GAGGCTTGAGATTATATATGT-----------------------------------------------------------
----------------------ATAGCTGAGTAACTAGTAAAATAGCTTGAAGGATTTT-CAACGTATAACATGGCCGA-
-----------AGTCATTTCATCTCATTGTTCTGCCTATATCTTTGCAGCCCTGCACTT--------------AGTGTCT
TTTCTGCA--ACAAGATGAACTCTATGATTTAATTAATTTCTGAAAAAAAAACTAGTGATAAAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
-------------------------S-------------------------------S----------------------
S-------------------------------------------------------------------------------
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-----S--------------------------------------------------------------------------
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----------------------------S---------------------------------------------------
-SS---------S-------------------------------------------------------------------
-------------S------------------------------------------------------------------
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-----------------------------------------------------------------------S--------
-----------------------------------------------------------S---S-------S--------
---------------S----------------------------------------------------------------
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--------S-------------------------------------------------------S---------------
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--------------------------------S-----------------------------------------------
-S-------------------------------S----------------------------------------------
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------------------S-------------------------------------------------------------
S-------------------------------------------------------------------------------
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-------------------------------------------S--------SS-SSSSS--S-
>forward_146
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----------------------------------------------CTGACGCACCCTCTGGATTT--------------
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>reverse_1002
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-----------------------------------------TGACCGAGGAAGGATCACCT-------------------
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>forward_681
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---------------------AACGCCAACGATGAAAACGG---------------------------------------
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>reverse_2225
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----------------------------------------------------------------TCTTAGTAGAGCTTGC
GAACAGA-------------------------------------------------------------------------
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