>input_sequence_79183
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------------------------------------------------------------ATGTCGGGCAGCGCCGGCGG
CGGGCGGCGGGGCTGGAGCCCGTTCGACGCGATCCGGAGCTTCCCTTCGAATCCCGAGTCCCTCATGTCCCAGATCGACG
CCGCCATCGCCTCCACGGAGTACGCCCGCGCCTGCGCCCTCCTCGACCCCGCCCCCGCCTCCACCTCCTCGCGGCCTCCG
CGCGGCAAGGGAGAGAAGGA---------GGAGGAGGCGTCGCCCGCGGCGCGGGCGCCTCCTCCCCCTGCCGCCGCCTG
CCACGACGCGCGGGTCGCGGACGAGGCGTACCGCGCGGCGTGCGCGGCGCTCGGGGCCGGGCGGCCGGACGCGGCCGTGC
GGTCGCTGCGGGCGGCGCTGGCCAGCTGCCCGCCGGAGAACGCCGCGGCGGTCGCCAAGGTGAGGTCGATGCTGGCCATC
GCGTCCGCGCAGCTGCACAGGCAGCAGCACCAGGCTCAGCAGCAGAGCGGCAGGAAATGA--------------------
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>chr6A_1_TraesCS6A01G313500
GACATTTTTGACATATTCATTAAATAAAAGTGGCCCAGCTCAGCCTAGTCAGATTATTATTTTTTAGACATACAATAGTT
CGAAACTCGTTTTCCTTTCCCGTCACGACAGTGGTGGCTAGGGCAAAGACCTTGTCCCCTCTAAGCTTCATCAACGAGCC
TAGGATTCGCCTCTCCTTTATTTGTCATTCTGTGGCCGTGGTGGTCGGAAGGAGAGTACTGATGCTATTGTTTTGGCTAG
TAGTCTAGATTAGGAGATTTTAGTCCTTGCAGGAAGAGCGCTCGGGTGAATGTCAACGATTCACTTTTGAGTTGGTCTCA
TGGGCTTCGATCCTTCTTGAGTTCGTCTTTCGGGACGGAGTCAATGGAGCTTCGTCGTAGATTATTGCTGCCTCCTTGGA
GCAATAAGGCTAGGGTTTTTGTCATGTGTGCGCGATGACAAGATCTGATGTTATACGCTTTAGATTGATTCAAGGGTTCA
ACGGTGACAACTTCGGCTGCAATGGTTGTTAGCACACGTGCACTGTGATTTCCCGGTTGTCATCAATAATGGCAGGCCAA
CTCTCATGGACGGATCCTGCTACAGTATGTGAAGGATTTGGGCCTCATGCCTAATGTCCTAATCTAGATCTGCCACGGTC
GACTCTGATAGGGGAAGGACAACAATAACACGTCAGCGGCCCGCGCTGGTGGCGGTAGTGTCAATGGTTGGTTCATGGAC
ATCAAATAATCTTCTTCTCAGAAAAAAGAGAGTATATTTTAGTATTAGATACATCCGTATATAGACAAATGACAAGAATT
TTGGAACGGAGGGAATATAATTTTATTATGTTT---ATTAGAATGTTTTGTACGT----ATTTTTTAGGCTTGGC-CACA
CATCAGGCACCACAACGCAGTACTATTTTTTA----------GACTCGAGCTACCTACCTCCCCCCTCATC--CCTCTTC
CTCCTCGCTAGTCGCCACTACCACTACCCATCAATTCCAATCCGCACCGCGGCTGCAGACATGTCGGGCAGCGCCGGCGG
CGGGCGGCGGGGCTGGAGCCCGTTCGACGCGATCCGGAGCTTCCCTTCGAATCCCGAGTCCCTCATGTCCCAGATCGACG
CCGCCATCGCCTCCACGGAGTACGCCCGCGCCTGCGCCCTCCTCGACCCCGCCCCCGCCTCCACCTCCTCGCGGCCTCCG
CGCGGCAAGGGAGAGAAGGA---------GGAGGAGGCGTCGCCCGCGGCGCGGGCGCCTCCTCCCCCTGCCGCCGCCTG
CCACGACGCGCGGGTCGCGGACGAGGCGTACCGCGCGGCGTGCGCGGCGCTCGGGGCCGGGCGGCCGGACGCGGCCGTGC
GGTCGCTGCGGGCGGCGCTGGCCAGCTGCCCGCCGGAGAACGCCGCGGCGGTCGCCAAGGTGAGGTCGATGCTGGCCATC
GCGTCCGCGCAGCTGCACAGGCAGCAGCACCAGGCTCAGCAGCAGAGCGGCAGGAAATGAGACGATATGTA---CTACTC
GCCTGTTCGTCTCAGCAGGATTGGTTTCTCCTCGAATTCGTTCCCTGTTGTATGTCACACATG-----------------
------TAACTTGTTTCCTCAAATTCGATCATTGTTGTCACTAACTGGGAGAAGTAATTATTAGCGCTATAGTAAACCAT
AGCTGCCTG-GAGAGTTATACTAGTGAAGATAAGATAAATGATCAGACGCT--TTTGTAAGTTTATTATTGCCTTGATGG
CTGTCTTCGGAGGCAGGAATTTTACAATTCAGGGCCTCTTTGATTCACAGGATTTTGAAAATGTAGGAATAGAAAAAGTA
TAGGACTACAGTGGCATGTCAACTTGAATCCTATAGGATTAGCAAAGAGTTTTGATGCCACATGAAAAATAAAGAAATTA
TAAAAAAAGGTTGGAGTTGATGTTAGATTTCCTATGAAATGTAGTACAAAAGATTTCATAAGATAAATTTCTATGGAATC
CAATCCTATAAATCAAAGGACCGACATAGGAAAAATTCTTAAGAATTTCAATCCTTCAAAAATCCTAAAGAATTCCTTTG
AATCAAAGGAGCCCTCAATTCTTGCAGAAATCAGGAGATGTTAAATCTTTTTTTTTTGAGCATCAGGAGATGTTAAATCG
GTCGGTTGTTAATAGCAATCCCACTTAATTAGCGCTCAGTTTTAGAAAAGGCCCACGAGAGGTGCATAGGACCCACCGTA
CTCATCCAACAACTGTGATGCTTCTAATCTTACGGTCGAGAAG--GTCTGATAAGGATCAGTAGTGTTCCCTAGCGGTTC
CCAGAGAGTAGTGTGATCCCTAGCATTTCTAGAGAAAGTAGTGTGATCCCTAGCATTTCCAGGGATTTATGTTCAGAAAG
GACCTTGATCAACCCAGCTGCGAAAACATTTATATCTTTGGTATAACAAGTTACAGAATATTCAGCTAAATTTTGAGCAG
GTTCTCATCA-------GCTCTTAATCTCCTATCAGCAACTTGGTGTACAACCGGCTT
>chr6D_815
ATATAA--------------------------------------------------------------------------
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-------------------ATTTTATTATGTGTAGAATTAGAATGTTTTGTACGTACGTATTTTTTAGGCTTGGGTCACA
CAAAAGACACCACTACGCAGTATTTCAGTTGGTCTCGCAACTGACTCGAGCTACCTACCTCCCCCTTCTTT--CCTCTTC
CTCCTCGCTAGTCGCCACTACTACCCCCAAAC--TTCTAATCCGCGCCGCCGCTGCAGACATGTCGGGCAGCGGCGGCGG
CGGGCGGCGGGGCTGGAGCCCGTTCGACGCGATCCGGAGCTTCCCTTCGAATCCCGAGTCCCTCATGTCCCAGATCGACG
CCGCCATCGCCTCCACGGAGTACGCCCGCGCCTGCGCCCTCCTCGACCCCGCCCCCGCCTCCACCTCCTCGCGGCCTCCG
CGCGGCAAGGGAGGGAAGGA---------GGAGGAGGCGACGCCCGCCCCGCGGGCGCCTCCTACCCCTGCCGCCGCCTG
CCACGACGCGCGGGTCGCGGACGAGGCGTACCGCGCGGCGTGCGCGGCGCTCGGGGCCGGGCGGCCGGACGCGGCCGTGC
GGTCGCTGCGGGCGGCGCTGGCCAGCTGCCCGCCGGAGAACGCCGCGGCGGTCGCCAAGGTGAGGTCGATGCTGGCCATC
GCGTCCGCGCAGCTGCACAGGCAGCAGCACCAGGCTCAGCAGCAGAGCGGCAGGAAATGAGACGATAGGTAGTGGTTCTA
GCCTGTTCGTCTCAGCAGGATTGGTTTCTCCCTGAATTCGATCCCTGTTGTATGTCACACATG-----------------
------TAACTGGTTTCCTCAAATTCGATCCTTGTTGTCACTAACTGGGAGAAGTAATTATTGGCGCTATAGTAAACCAT
AGCCGCGTGAGAGTTA-----TAGTGAAGGGAAAATAAATGATCAGACGCT--TTTGTAAGTC---TATTGCCTTAATGG
CTGTCTTCGGAGGCAGGAATTTGATAAT----------------------------------------------------
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--------------TCAATTTTTGCAGAAATCAGGAGATGTTAAATC--------------------------------G
GCCGGAAGTTAATAGCAATCCCACTTAATTAGCGTTCTGTTTTGGAAAAAGCCCGCGAGAGGTGCATAGGGCCCGCCGTA
CTCATCCAACGACTGTCATGTTTCTAATCTTACGAGAA------GGTCTGATAAGAATCAGTAGT---------------
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--------------------CCAATACCTTTATATCTTTGGTATATCAAGTTACAGAGTATTCAGCTAAATTTTGAGCAG
GTTCTCATCACTCATCAGCTCTTAATCTCCTATCAGCAACTTGGTGTACAACCGGCTT
>chr6B_905
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------------------------------------------GACTCGAGCTACCTACCTCCCCCCTCCTCCCCCTCTCC
CTCCTCGCTGGTCGGCACTACTACTACCCATCAATTCTAATCCGCACCGCGGCTGCAGACATGTCGGGCAGCGCCGGCGG
CGGGCGGCGGGGCTGGAGCCCGTTCGACGCGATCCGCAGCTTCCCTTCGAACCCGGAGTCCCTCATGTCCCAGATCGACG
CCGCCATCGCCTCCACGGAGTACGCCCGCGCCTGCGCCCTCCTCGACCCCGCCCCCGCCTCCACCTCCTCGCGGCCTCCG
CGCGGCAAGGGAGAGGACGGGGAGGAGCGGGAGGGGGCGTCGTCCGCGGCGCGGGTTCCTTCTTCCCCCGCCGCCGCCTG
CCACGACGCGCGGGTCGCGGACGAGGCGTACCGCGCGGCGTGCGCGGCGCTCGGGGCCGGGCGGCCGGACGCGGCCGTGC
GGTCGCTGCGGGCGGCGCTGGCCAGCTGCCCGCCGGAGAACGCCGCGGCGGTCGCCAAGGTGAGGTCGATGCTGGCCATC
GCGTCCGCGCAGCTGCACAGGCAGCAGCACCAGGCTCAGCAGCAGAGCGGCAGGAAATGAGATGATAGGTA---GTACTC
GCCTGTTCATCTCAGCAGGATTGGTTTCTGCTCAAATTCGATCCACATGTTAGTAGTAGTGCCGACCAGCCTTGGGAGAT
ACTCCCTAACTGGTTTCCTCAAATTCAGCCTTGGGAGATACTCATTAG---------------------TAGTAAACCAT
AGGTGAGTG-GAGTTA-----TGGTGCAGAAAATATAAATGTTCAGACGCCGCTTTGTAAGTTT--TATTGCCGTAATTG
CTGTCTTCGGAGGCAGGAATTTTGCAG-----------------------------------------------------
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-------------CTCAATTCTTGCAGAAATCAG---ATGTTAAATC--------------------------------G
GCCAGTAGTTAATAGCAGTCCCACTTAATTAAGGG---------------------------------------------
----TCCAAGGACTGCGATGCTTCTAATCTTACGGTCAGGAAGTGGTCTGATAGGAAGTGG-------------------
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--CCTTGATCAACCGAGTTGCGAAAACGTTCATATCTTTTGTGTAGCCAATTACAAAATATTCAGCTAAAATTTGAGCAG
GTTCTCATCA-------GCTCGTAATTTCCTATCAGCAACTTGGTGTACAACCGGCTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS------------S------------------------------------------S-----
--SS--S------S--------S-SSSS--SS------------------------------------S-----------
---------------------S---------------S------------------------------------------
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-------------------------------------------------------------------S------S-----
----------------------------------------S---------------------------------------
-----------S------------------S-------------------------------S-----------------
------S------SSSSSSSS---------S--S------------------------------SS---------S----
----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-S----S---------------------------S--S-----S-----S----S---------------S---S-----
----------S--------------------------SS----------------S---------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS------------S--S---------S-----------------S----------------------------------
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>forward_445
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-------------------------GTGTGCGCGATGACAAGATC-----------------------------------
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>reverse_2399
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------------------------------------------------------------------------------AG
GACCTTGATCAACCCAGC--------------------------------------------------------------
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