>input_sequence_79176
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---------------------------------------------------------------------ATGGCCTCTCC
TAAGGTCGCGCTCGCCGCCATGGCCGTCGTCGTCGCCGTGGCCGCCTTGCTCCCGGCGACGGCTTCGGCGGCGTCGTACA
CAGTCGGCGACGACTCCGGGTGGGACATCGGGATCGACTACCGCGCCTGGG-----------------------------
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-------------------------------------------------------------CCAGCGGCAAGAAGTTCAG
AGTCGGCGACACCCTCGGTACGTCTCGTCTCGGGGCACCAACCTTGCATGCAC----GATCGGCGTTGGTACAT------
-----TGAGTTGATCCATTT-----TCGTCCGTGCGTGCAGAGTTTCTCTACTCGTTGGGTGAGGCCGAGCACAACGTGG
TGTTGGTGGACGCGCAGAGCTTCGCGGCGTGCACCGTGCCGAGCAACGCGCCGACGCGGACCACCGGCGACGACACGGTG
TCGCTGACGCAGGCCGGGCAGTGGTTCTTCATCTGCGGCATTGAGGGCCACTGCCAGGACGGCATGAAGCTCGCCGTCAA
CGTCCACTGA----------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G438500
GTCTGGCACTGCAAATAAAAAGCAATTCGAGGACCCCCAA-CCCCCTTCCCTCAACCTTGAAGGCGGCGGTCTGGAGCAA
TTCGGCGCCGCCGAATATCAAATTATTTGGCTGGCTAATCCTGCAAAACAATATTTGGACCATTGACCGCTTGCAACAAG
G-GGATGTCATAACTGTGGTCAATGCCAACTTTGCAAAAGAGTTTCGGAGATGGCCGCAGAAACGATCCAATCCATTAGG
GGCTTCGGGGAACCCAAAAACAAACTCTGTACTCTGAGCGCATCTGGGCTATGGTCAGAGATTGGCTTGGCATCCATGAC
ATGTCCTTCGATGATTGGCCAAACTTCCAAAGTCTGGCTCAATGGTGGTCCGCTGTGATCCACATCAACGCCCAACGAAG
GAAGGTTGTTGCATCCTTGGTGATTCTCACGTCTTGAGATGTCTGAAACGGGAGAAATGCTCGAGTCTTTCGAAACATCT
ACACCTTTTGCCAACGACGATATCCGCCATCATCAAGCGCGAGACGTCACTTTGGGGCATTGCCGGGGCCAAACACTTGA
GGTTGATCATGCTACGAGGGTAATTCCTAGCATTTATTTGCGCCGTCGGGTGAGAGTTGTAATTCTAAACTTTCTTTTTA
ATC------AATAAAATGCGGCCAAACTTTGGCCCATGTTTGAGAAAAG----GAGGACGAAACCAATGTTATCTCGTCC
GGCCGTAAAAAACACAGGAATTCCCCTGCCCACTCCTTCCTTGCCACCGAAAGCCCAGCTTGCGCGGCCAGTTGCGCATC
GTTGGCTGTACGTACGTGCTTTAGTT---------CTGCATCGATCACACCGTGAACGGCTTGTCATGTTCCAAACCAGC
CAAAGTCACCGGCTCCCAAAGCTACCACTATATGT----ACACGCACCACGAAGCCGATACACAAACACACACAACGCTC
AACGCAACCTCCAACATACCGATCGAACCACCTTACTTGTGC----ACGCCTCCCCGTCGCCTACTGTAATGGCCTCTCC
TAAGGTCGCGCTCGCCGCCATGGCCGTCGTCGTCGCCGTGGCCGCCTTGCTCCCGGCGACGGCTTCGGCGGCGTCGTACA
CAGTCGGCGACGACTCCGGGTGGGACATCGGGATCGACTACCGCGCCTGGG-----------------------------
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-------------------------------------------------------------CCAGCGGCAAGAAGTTCAG
AGTCGGCGACACCCTCGGTACGTCTCGTCTCGGGGCACCAACCTTGCATGCAC----GATCGGCGTTGGTACAT------
-----TGAGTTGATCCATTT-----TCGTCCGTGCGTGCAGAGTTTCTCTACTCGTTGGGTGAGGCCGAGCACAACGTGG
TGTTGGTGGACGCGCAGAGCTTCGCGGCGTGCACCGTGCCGAGCAACGCGCCGACGCGGACCACCGGCGACGACACGGTG
TCGCTGACGCAGGCCGGGCAGTGGTTCTTCATCTGCGGCATTGAGGGCCACTGCCAGGACGGCATGAAGCTCGCCGTCAA
CGTCCACTGATCCACTAT----CGTTCAACTGGTGTAGCCGCTGCGACCGTGCGAATAAAATCTTGAGAGT-----ACAT
TGTACCATTACGCAATTCGGGCCAGTACTTGGCACTAGTAGAAAAGGGGGCTTTTGTCCCGGTTGGTAAGGGCCTTTAGT
CCCGGTTTTTGAACCGGGATTAAAGGGTCGTTACTAATGCCT--CCCCTGTAGTCCCGGTTCTTACACGAACCGGGACTA
AAGACCGTCCACGTGGACGCAGCCTGGAGCTCCGCCTTTAGTCCTGGTTGGTGTTACCAACCGGGACTAAAGGAAATTTT
ATGATATATTTTTTTTGAAA-AAAAAATTTGTG-AA--TTTTTTTT--AT---T-------TTTTTTTATTTTCAAATTC
CTGAATTATTTTAACCTCTAATCTCTAATCACCACCCCTCATCACTGCTCAATTTATCCTCTAATCTTTAATCACCCCTC
ATCATTCCAAATCATCTAACTTTCCGGACGGTCACCCATCCTCTCACTACTCCAGCCTGAACACGCTTAGCTTCCGGGTT
CTATTCTCCCTCGTTTCCAAGTCTGCACTTGTTGTTTTCCTGACAATAGTAAGATGTCAATTCTATTAACCCTCAGGAAT
TTAGCTTGAGCATGAAGTGACACATTTCACTGTTTGAGTTTGAAACTATTGTTTTAAAAAACAATAATTATTTAGTAACA
CTAATATTTCTGGAATAATTAGTTTGACCATTGTTTGACCACTGTTTGACCAGATTTGACCAAAATTCAAA-A-AAACTG
AAATAATTATTTAGTAACACTAATATTCTAGAATAATTAGTTTGACCATTGTTTGACCACAATTTGA------------A
ATTT-TTCGAATTTTTTTGCCTCTCCGGATCTTAAAAGCCCCGTATC-TTTTTTCTGTTAGGTTTTTGAGGATTTTGAAA
ATGTTTAACGGGGTTCCCCCGATTAAATTCGGATGTAACTTTTCGAGTAGATGATTTTTCATATAAAAAAACTTTTTCAT
CCGAGTTCGTATG
>chr5D_3
--CTGGCACTGCAAATAAAAAGCAATTCGAGGACCCCCACCCCCCCTTCCCTCAACCTTGAAGGCGGCGGTCTGGAGCAA
TTCGGCGCCGCCGAATATAAAATTATTTGGCTGGCTAATCCTGCAAAACAATATTTGGACCATTGACCGCTTGCAACAAG
GGGGATGTCATAACTGTGGTCAATGCCAGCTTTGCAAAAGAGTTCCGGAGATGACCGCAGAAACGATCCAATCCATTCGG
GGCTTCGGGGAACCCAAAAACAAACTCTGTACTCTGAGCGCATCTGGGCTATGGTCAGAGATTGGCTTGGCATCCATGAC
ATGTCCTTCGATGATTGGCCAAACTTCCAAAGTCTGGCTCAATGGTGGTCCGCTGTGATCCACATCAACACCCAACGAAG
GAAGGTTGTTGCATCCTTGGTGATTCTCACGTCTTGAGATATCTGAAACGAGAGAAATGTTCGGGTCTTTCGAAACATCT
ACACC--TTGCCAACGACGATACTCGCCATCGTCAAGCACGAGGCGTCACTTTGGGGCATTGCCGCGGCCAAACACTTGA
GGTTAATCATGCTGCGGGGGTAATTCCTTACATGTATTTGCGCTGTCCGGCCAGAGTTGTAATTCTAAACCTTCTTCTTA
ATC------AATAAAATGTGGCTAAAGTTTGGCCCATGTTTCTGAAAAG----GAGGACGAAACCAATGTTATCTCGTCC
GACCGTAGAAAACACAGGAATTCCCCTGCCCACTCCTTCCTTGCCACCGAGAGCCCAGCTTGCGCGGCCAGTTGCGCATC
GTTGGCTGTACGTACGTGCTTTAATT---------CTGCATCGATCACATCGTGAACGGCTTGTCCTGTTCCAAACCAGC
CAAAGTCACCGGCT---------------ATATGTAC--ACGCGCACCACGAAGCCGATAAACAAACACACAAAACA---
----CAACCTCCAACATACCGATCGAACCACCGTACTTGTGC----ACGCCTCCCCGTCGCCTACAGTACTGGCCTCTCC
TAAGGTCACGCTCGCCGCCATGGCCGTCGTCGTCGCCGTGGCCGCCTTGCTCCCGGCGACGGCTTCCGCGGCGTCGTACA
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>chr5A_82
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--CGGCGCCGCCGAATCTATAGTTATTGTTCTAGGTAATCCTGCAAAACAATATTTGGACTGTTGACCGCTTGCAACAA-
GGGGATGTCATAACTATGGTCAATGCCAACTTTGCAAAAGAGTTCCGGAGATGGCCGCACACATTTTGTCCGGGTGCCGA
-----------------------------TACTCTGAGCGCATCTGGGCTATGGTCAGAGATTGGCTCCGCATCCATGAC
ATGTCCTTCGATGATTGGCCAAACTTCCAAAGTCTGGCTCAATGGTAGTCCACTGTGATTCACATCAATAGCCAACGAAG
GAAGGTTGTTGCATCCTCGGTGATTCTCACGTCTTGAGATATCTGAAACAAGAGAAATGCCCGGGTCTTTCAAAACATCT
ACGCC--TCACCAACAACGATATTCGCCATCATCTAGCGCGAGGCGTCACTTTGGGGCATTGCCGGGGCCATACACTTGA
GGTTGATCATGCTGCGCGGGTAATTCCTTACATGTGTTTGCGCCGTCGGGTGAGAGTTGTAATTCTAAACCTTCTTCTTA
GTC------TATAAAACGGGGCCAAACTTTGGCCCATGTTTCAGAAAAG----GAGGACGAAACCAATGTTATCTCGTGC
GGCCGTAAAAAACACAGGAATTCCCCTGCCCACTCCTTGCTTGCCACCGAGAGCCCAGCTTGCGCGGCCAGTTGCGCATC
GTTGGCTGTACGTACGTACGTGCTTTTAAATTCTGCTGCATCGATCACACCGTGAACGGCTTGTCGTGCTCCAAACCAGC
CAAAGTCACCGGCTCCCATAGCAACCACTATATGTACGTACACACACCACGAAGCCGATACACAAACACACACAACG---
----CAACCTCCAACATACAGATCGAACCACCGTGCTTGCGCACCTACGCCTCCCCGTCGCCTACAGTAATGGCCTCTCG
TAAAGTCGCGCTCGCCGCCATGGCCGTCGTCATCGCCGTGGCCGCCTTGCTCCCGGCGACGGCTTCCGCGGCGTCGTACA
CCGTCGGCGACGACTCCGGGTGGGACATCGGGATCGACTACCGCGCCTGGG-----------------------------
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-------------------------------------------------------------CCAGCGGCAAGAAGTTCAG
AGTCGGCGACACCCTCGGTGCGTTTCATCTCGGGGCACCAACCTTGCATGCATGCATGATCGGCGTATGTATATTGACTT
ATTGATGAGTTGATCCATTTTCGTCTCGTCCGTGCGTGCAGAGTTTCTCTACTCGTTGGGGGAGGCCGAGCACAACGTGG
TGTTGGTGGACGCGCAGAGCTTCGCGGCGTGCACCGTGCCCAGCAACGCGCCCACGCTCACCACCGGCGACGACACCGTG
TCGCTGACGCAGGCCGGGCAGTGGTTCTTCATCTGCGGCATCGAGGGCCACTGCCAGGACGGCATGAAGCTCGCCGTCAA
CGTCCACTGATCCACTATATATCGATCAACTGGTGTAGCCACTGCGACCGTGCGAATAAAAATCTTCAGAGCACGCACAT
TGTACCATTACGCAATTCGGGCCAGTACTTGGC-----------------------------------------------
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>chr5B_268
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-----------------------------TACTCTATGCGCATCTGGGCCATAGTCGGAGATTGGCTCGGCATCCACGAC
ATGTCCTTTGATGATTGGCCAAACTTTCAAAGTGTGGCTCAATGGTGGTCCGCTGTGATCCACATCAACGGCCAACGAAG
GAAGGCTCTTGCATCTTTGGTGATTCTCACGTCATGGGAAATCTG-AACGAGAGGAATTTTCGGGTCTTGAGGAACATCT
ACACC--TTGCCACCGGCGATATTCACCATCATCAAGCGCGAGGCGGCACTTTGGGGCATTGCTGGGGCCAAACACTTGA
GGTTGATCATGCTGTGAGGGTAATTCGTTACATGTATTTGCACCCTCGGGCGAGAGTTGTAATTCTAAACCTTCTTCCTA
ATAAATTAATATAAAATGTGGCAAAGCTTTTGTCCATGTTTTCCAAAAATGGAGAGGAAGAAATCAATGTTATTTCGTCC
GGCCGTAAAAAACACAGGAATTCCCCTGCCCACTCCTTCCTTGCCACCGAGAGCCCAGCTTGCGCGGGCAGGTGCGCATC
GTTGGCTGTACGTACGTGCTTTAATT---------CTGCATCGATCACACCGTGAACGGCTTGTCGTGTTCCAAACCAGC
CAAAGCCACCGGCTCCTATAGCAACCACTATATGT----ACACGCGCCACGAAGCCGATACACAAACGCACACAACG---
----CAACCTCCAACATACCGATCGACCCACCGTACTTC-GC----ACGCCTCCCCGTCGCCTACAGTAATGGCCTCTCC
TAAAGTCGCGCTCGCCGCCATGGCCGTCATCGTCGCCGTGGCCGCCTTGCTCCCGGCGACGGCCTCCACGGCGTCGTACA
CGGTCGGCGACGACTCCGGGTGGGACGTCGGGGTCGACTACCGCGCCTGGGCCAGCGGCAGAGTGAATTGCAGAAAACCA
CCACATTTCAGCTTAGGTTTGCAGAAAACACTCTTCTACGTTTTTGCTGCGGAAAACACTGATTTTTTTTCTAATCTTTT
ACAAAATACACTAATGGGCTCCTTAGGTCATTTAATCATGATTATGACATATGGGTCCCACATTTGATGACATGGCGTAA
CGTTTTGTGGTAGACGATGTTAGGCTGGTCTTTTTTTCAAAAAAACCCTCCCTCCCAAAGATAAATCCAAATCGCGGGGA
GCGCTCGCCGTCCGAGCTGCGGCGCCCGCAGCCAGATTCCTCTGTCTCCGTCGGGGGCACTGGTGGCGCAGCGGCAATGG
AAGCCACCGTCGACAGCTAGGGGGTAGTCGAGGGGCGGCTCTACAGTCGACGACCTCTGGCTGCGGATGCGGGAAAGGGG
AGATGGGCCCGGGGCGTCGGGGACTCGCGTGGCAGCAGCGACGGCGAGCCCGGCGGCCTCCCCGACCTCGGCCCTGGCGC
AAGCAGCGGCGGTCGCGCCTCCTCTTCACCATCCTCCGTCCTCTCTCTTTCCTGAGCAGGCGGCGCGCCTCCCGGCGGCC
TCCACGACTTCGGCCCTGGAGCAAGCAGCGGCGCGCCTCGCGGCGGCCTCCCCGATCTCGACCCTGGAGCAAGCAGAGGC
GCGACCTCGAGCAGCACGGGAACGAGCCTCGGCGGCGGCGCACATCACAAGAGCAAGTAGCGGCGCGGCGGCGCACAACA
CGAGCACAAGCAGCAGCAACGGCGCGGCGGCGCGCAGCGCCGGAGCAAACAGCAGCAACGGTGCGGCGGCGCGTAGCCCC
GGAGCAAACAGAGCGCAAGCAACAGCGGCAGCTCAGCGGCGCGCAGCACGTGCACAACCAAGCAGCGCCCCTCGTCGGTG
AGCTCCGCCGCTGCCGGGGCACCGGCGTGGGCGACAGCGCACGAGCGCTGGATGGCCGGCGGCAAAGTACAGTCGAGCTT
GGCATGGCAAGGGCCTGATTGCATTTCTGTTTTCTGATAGAAGGGTGCCACTGCAAAAATATCAGGGACTATTTGGTAAT
TTCACATCACACCATGTCTAACGCCGTTTGGGACCTATAGTTACGCCACGTCACCAAAGCTGGGCCCCACTTGTCATAAA
CGAGGTTAAAATGCCCAAACAAACGGATCAGTGCTTTCTGCAAAAGATTAGGCCGAGAATCAGTGTTTTCTGCAACATTT
TCGTAGAAGAGTGTTTTCTGCAAACCTACACTGTAATGTGGTGGTTTTCTGTAATTCACTCCCAGCGGCAAGAAGTTCAG
AGTCGGCGACACCCTCGGTACGTCTCGTCTCGGGGCACCAACATTGCATGCA--------CGGCGTTGGTACAT------
-----TGAGTTGATCCATTT-----TCGTCTGTGCGTGCAGAGTTTTTGTACTCGTTGGGGGAGGCCGAGCACAACGTGG
TGTTGGTGGACGCGCAGAGCTTCGGGGCGTGCAGCGTGCCGAGCAACGCGCCGACGCTGACCACCGACGACGACAAGGTG
TCGCTGACGCAGGCCGGGCAGTGGCTCTTCATCTGCGGCATCGAGGGCCACTGCCAGGACGGCATGAAGCTCGCCGTCAA
CGTCCACTGATCCACTGT----CGATCAACTGGAGGAGCAGC--------------------------------------
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>chr7D_1564
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-------------------------------GCACTAGTACAAAAAGGGGCTTTTGTTCCGGTTGGTAAGGGCCTTTAGT
CCCGGTTTTTGAACCGGGACTAAAGGGTCGTTACTAATGCCTCCCCCCTTTAGTCCCGGTTCTTACACGAACCGGGACTA
AAGGCCGTCCACGTGGACGCAGCCTGGAGCTCCACCTTTAGTCCCGGTTGGTGTTACCAACCGGGACTAAAGAAAATTTT
ATGATATTTTTTTTTGAATT-TTTTT-TTGT-GAAT--TTTTTAAA--TTTTCT-------TTTTTTGATTTTCAAATTT
GTGAATTATTTTAACCTCTAATCTCTAATCACCACCCCTCATCACTGCTCAATTTATCCTCTAATCTCTAATCACCCCTC
ATCATTCCAAATCATCTAACTACCCGGACGGTCACCCATCCTCTCACCACTCCAGCCTGAGCACGCTTAACTTCTGGGTT
CTATTCTCCCTTGTTTCCAAGTCTGCACTTGTTGTTTTCCTGACAATAGTAAGATGTCAATTCTATTAACCCTCAGGAAT
TTAGCTTGAGCATGAAGTGACACATTTCACTGTTTGAGTTTGAAACTATTGTTTTAAAAAACAATAATTATTTAGTAACA
CTAATATTTCTAGAATAATTAGTTTGACCATTGTTTGACCATAGTTTGACCAGATTTCACCAAAATTC-AA-AAAAACTG
AAATAATTATTTAGTAACACTAATATTCTAGAATAATTAGTTTGACCATTGTTTGACCACAATTTGA------------A
ATTT-TTTGAATTTTTTTGCCTCTCCAGATCTTAAAAGCCCCGTATCTTCTTTTCTGTTAGGTTTTTGAGGATTTTGAAA
ATGTTTAACGGGGTTCCCCCGATTAAATTCGGATGTAACTTTTCGAGTAGATGATTTTTCATAT-AAAAAACTTTTTCAT
CCGAGTTCGTATG
>chr2D_1564
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-------------------------------GCACTAGTAGAAAAGGGGGCTTTTGTCCCGGTTGGTAAGGGCCTTTAGT
CCCGGTTTTTGAACCGGGAATAAAGGGTCATTACTAATGCCTCCCCCCTTTAGTCCCGGTTCTTACACGAACCGGGACTA
AAGGCCGTCCACGTGGACGCAGCCTGGAGCTCCACCTTTAGTCCCGGTTGGTGTTACTAACCGGGACTAAAGGAAATTTT
ATGATATTTTTTT--AAAAA-A-----------AAA--ATTTGTGA--AT---T-------TTTTTTTATTTTCAAATTT
CTGAGTTATTTTAACCTCTAATCACTAATCACCACCACTCATCACTGCTCAATTTATCCTCTAATCTCTAATCACCCCTC
ATCATTCCAAATCATCTAACTTCCCGGACGGTCACCCATCCTCTCACTACTCCAGCCTGAGCACGCTTAACTTTCGGGTT
CTATTCTCGCTCGTTTCCAAGTCTGCACTTGTTGTTTTCCTGACAATAGTAAGATGTCAATTCTATTAACCCTCAGGAAT
TTAGCTTGAGCATGAAGTGACACATTTCACTCTTTGAGTTTGAAACTATTGTTTTAAAAAACAATAATTATTTAGTAACA
CTAATATTTCTGGAATAATTAGTTTGACCATTGTTTGACCACAGTTTGACCAGATTTGACCAAAATTCAAA-AAAAACTG
AAATAATTATTTAGTAACACTAATATTCTAGAATAATTAGTTTGACCATTGTTTGACCACAGTTTGACCACAATCTGAAT
TTTT-TTTGATTTTTTTTGCCTCTCCAGATCTTAAAAGCCC-GTATCTTTTTTTCTGTTAGGTTTTTGAGGATTTTGAAA
ATGTTTAACGGGGTTCCCCCGGTTAAATTCGGATGTAACTTTACGAGTAGATGATTTTTCATAT-AAAAAACTTTTTCAT
CCGAGTTCGTATG
>chr5D_1565
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--------------------------------CACTAATAGAAAAGGGGGCTTTTGTCCCGGTTGGTAAGGGCCTTTAGT
CCCGGTTTTTGAACCGGGACTAAAGGGTCGTTACTAATGCCT-CCCCCTTTAGTCCCGGTTTTTACACGAACCGGGACTA
AAGGCCGTCCACGTGGACGCAGCCTGGAGCTCCACCTTTAGTTCCGGTTGGTGTTACCAACCGGGACTAAAGGAAATTTT
ATGAT--TTTTTTTTTGAAATTTTTT-TTTGCG-A---TTTTTTAA--TT---T-------TTTTTTGATTTTCAAATTT
CTGAATTATTTTAACCTCTAATCTCTAATCACCACCCCTCATCACTGCTCAATTTATCCTCTAATCTCTAATCACCCCTC
ATCATTCCAAATCATCTAACTTTCCGGACGGTCACCCATCCTCTCACTACTCCAGCCTGAGCACGCTTAACTTCCGGGTT
CTATTCTCCCTTGTTTCCAAGTCTGCACTTGTTGTTTTCCTGACAATAGTAAGATGTCAATTCTATTAACCCTCAGGAAT
TTAGCTTGAGCATGAAGTGACACATTTCACTGTTTGAGTTTGAAACTATTGTTTTAAAAAACAATAATTATTTAGTAACA
CTAATATTTCTGGAATAATTAGTTTGACCATTGTTTGACCACTGTTTGACCAGATTTGACCAAAATTCAAA-AAAA--TG
AAATAATTATTTAGTAACACTAATATTCTAGAATAATTAGTTTGACCATTGTTTGACCACAATTTGA------------A
TTTT-TTTGAATTTTTTTGCCTCACCAGATCTTAAAAGCCCCGTATCTTTTTTTCTGTTAGGTTTTTGAGGATTTTGAAA
ATGTTTAACGGGGTTCCCCGGGTTAAATTCGGATGTAACTTTTCGAGTAGATGATTTTTCATAT-AAAAAACTTTTTCAT
CCGAGTTCGTATG
>chr1D_1565
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--------------------------------CACTAGTAGAAAAGGGGGCTTTTGTCCCGGTTGGTAAGGGCCTTTAGT
CCCGGTTTTTGAACCGGGACTAAAGGGTCGTTACTAATGCCTCCCCCCTTTAGTCCCGGTTCTTACACGAACCGGGACTA
AAGGCCGTCCACGTGGACGCAGCCTGGAGCTCCACCTTTAGTCCCGGTTGGTGTTACCGACCGGGACTAAAGGAAATTTT
ATGATATATTTTTTTTGAAATTTTTT-TTTGCG-AA--TTTTTTTAATTT---T-------TTTTCTGATTTTCAAATTT
CTGAATTATTTTAACCTCTAATCTCTAATCACCACCCCTCATCACTGCTCAATTTATCCTCTAATCTCTAATCACCCCTC
ATCATTCCAAATCATCTAACTTCCCGGACGGTCACCCATCCTCTCACTACTCCAGCCTGAGCACGCTTAACTTCCGGGTT
CTATTCTCCCTCGTTTCCAAGTCTGCACTTATTGTTTTCCTGACAATAGTAGGATGTCAATTCTATTAACCCTCAGGAAT
TTAGCTTGAGCATGAAGTGACACATTTCACTGTTTGAGTTTGAAACTATTGTTTTAAAAAACAATAATTATTTAGTAACA
CTAATATTTCTGGAATAATTAGTTTGACCATTGTTTGACCACAGTTTGACCAGATTTGACCAAAATTCAAA-A-AAACTG
AAATAATTATTTAGTAACACTAATATTCTAGAATAATTAGTTTGACCATTGTTTGACCACAATTTGA------------A
ATTT-TTAGAAATTTTTTGCCTCTCCAGATCTTAAAAGCCCCGTATCTTTTTTTCTGTTAGGTTTTTCAGGATTTTGAAA
ATGTTTAACGGGGTTCCCCCGATTAAATTCGGATGTAACTTTTTGAGTAGATGATTTTTCATAT-AAAAACCTTTTTCAT
CCGAGTTCGTATG
>chr4D_1565
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--------------------------------CACTAGTAGAAAAGGGGGCTTTTGTCCCGGTTGGTAAGGGCCTTTAGT
CCCGGTTTTTGAACCGGGGCTAAAGGGTCGTTACTAATGCCT-CCCCCTTTAGTCCCGGTTCTTACACGAACCGGGACTA
AAGGCCGTCCACGTGGACGCAGCCTGGAGCTCCACCTTTAGTCCCGGTTGGTGTTACCAACCGGGACTAAAGGAAATTTT
ATGATATTTTTTTTTTGAAA-ATTTT-TTGGCGAATTTTTTTTTAA--TT---T-------TTTTTTGATTTTCAAATTT
CTGAATTATTTTAACCTCTAATCTCTAATCACCACCCCTCATCACTGCTCAGTTTATCCTCTAATCTCTAATCACCCCTC
ATCATTCCAAATCATCTAACTTCCCGGACGGTCACCCATCCTCTCACTACTCCAGCCTGAGCACGCTTAACTTCCGGGTT
CTATTCTCCCTCGTTTCCAAGTCTGCACTTGTTGTTTTCCTGACAACAGTGAGATGTCAATTCTATAAACCCTCAGGAAT
TTAGCTTGAGCATGAAGTGACACATTTCACTGTTTGAGTTTGAAACTATTGTTTTAAAAAACAATAATTATTTAGTAACA
CTAATATTTCTGGAATAATTAGTTTGACCATTGTTTGACCACAGTTTGACCAGATTTGACCAAAATTCAAA-A-AAACTG
AAATAATTATTTAGTAACACTAATATTCTAGAATAATTAGTTTGACCACAGTTTGACCACAATTTGA------------T
TTTT-TTTGAATTTTTTTGCCTCTCCAGATCTTAAAAGCCCCGTAAC-TTTTTTCTGTTAGGTTTTTGAGGATTTTGAAA
ATGTTTAACGGGGTTCCCCCAGTTAAATTCGGATGTAACTTTTCGAGTAGATGATTTTTCATAT-AAAAAACTTTTTCAT
CCGAGTTCGTATG
>chr4D_1565
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--------------------------------CACTAGTAGAAAAGGGGGCTTTTGTCCCGGTTGGTAAGGGCCTTTAGT
CCCGGTTTTTGAACCGGGACTAATGGGTCGTTACTAATGCCTCCCCCCTTTAGTCCCGGTTCTTACACGAACCGGGACTA
AAGGCCGTCCACGTGGACGCAGACTGGAGCTCCACCTTTAGTCCCGGTTGGTGTTACCAACCGGGACTAAAGAGAATTTT
ATGATTTTTTTTT--GAAAA-TTGTT-TTTGCGAAA--TTTTTTTA--AT---T-------TTTTTTTATTTTCAAATTT
CTGAATTATTTTAACCTCTAATCTCTAATCACCACCCCTCATCACTGCTCAATTTATCCTCTAATCTCTAATCACCCCTC
ATCATTCCAAATCATCTAACTTCCCAGACGGTCACCCATCCTCTCACTACTCCAGCCTGAGCACGCTTAACTTCCGGGTT
CTATTCTCCCTCATTTCCAAGTCTGCACATGTTGTTTTCCTGACAATAGTAAGATGTCAATCCTATTAACCCTCAGGAAT
TTAGCTTGAGCATGAAGTGACACATTTCACTGTTTGAGTTTGAAACTATTGTTTTAAAAAACAATAATTATTTAGTAACA
CTAATATTTTTGGAATAATTAGTTTGACCATTGTTTGACCACAGTTTGACCAGATTTGACCAAAATTCAAAAC--AACTG
AAATAATTATTTAGTAACACTAATATTCTAGAATAATTAGTTTGACCATTGTTTGACCACAATTTGA------------A
ATTT-TTTGAATTTTTTTGCCTCTCCAGATCTTAAAAGCCCCGTATCTTTTTTTCTGTTAGGTTTTTGAGGATTTTGAAA
ATGTTTAACGGGGTTCCCCCAGTTAAATTCGGATGTAACTTTTCGAGTAGATGATTTTTCATAT-AAAAAACTTTTTCAT
CCGAGTTCGTATG
>chr3D_1565
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--------------------------------CACTAGTAGAAAAGGGGGCTTTTGTCCCGGTTGGTAAGGGCCTTTAGT
CCCGGATTTTGAACCGGGACTAAAGGGTCGTTACTAATGCCTCCCCCCTTTAGTCCCGGTTCTTACACGAACCGGGACTA
CAGGCCGTCCACGTGGACGCAGCCTGGAGCTCCACCTTTAGTCCCGGTTGGTGTTATCAACCGGGACTAAAGGAAATTTT
ATGATATTTTTTT--GAAAG-TTTTT-TTTGCG-AA--TTTTTTTT--AT---T-------TTTTTTTATTTTCAAATTT
CTGAATTATTTTAACCTCTAATCTCTAATCACCACCCCTCATCACTGCTCAATTTATCCTCTAATCTCTAATCACCCCTC
ATCATTTCAAATCATCTAACTTCCCGGACGGTCACCCATCCTCTCACTACTCCAGCATGAGCACGCTTAACTTCCGGGTT
CTATTCTCCCTCGTTTCCAAGTCTGCACTTGTTGTTTTCCTGACAATAGTAAGATGTCAATTCTATTAACCCTCAGGAAT
TTAGCTTGAGCATGAAGTGACACATTTCACTGTTTGAGTTTGAAACTATTGTTTTAAAAAACAATAATTATTTAGTAACA
CTAATATTTCTGGAATAATTAGTTTGACCACTGTTTGACCACAGTTTGACCAGATTTGACCAAAATTC-AAAA-AAACTG
AAATAATTATTTAGTAACACTAATATTCTAGAATAATTAGTTTGACCACAGTTTGACCACAATTTGA------------A
ATTT-TTTGAATTTTTTTGCCTCTCCAGATCTTAAAAGCCCCGTATCTTTTTTTCTGTTAGGTTTTTGAGGATTTTGAAA
ATGTTTAACAAGGTTCCCCCGGTTAAATTCGCATGTAACTTTTCGAGTAGATGATTTTTCATAT-AAAAAACTTTTTCAT
CCGAGTTCGTATG
>chr2D_1565
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--------------------------------CACTAGTAGAAAAGGGGGTTTTTGTCCCGGTTGGTAAGGGCCTTTAGT
CCCGGTTTTTGAACCGGGACTAAAGGGTCGTTACTAATGCCTCCCCCCTTTAGTCCCGGTTCTTACACGAACCGGGACTA
AAGGCCGTCCACGTGGACGCAGCCTGGAGCTCCACCTTTAGTCCCGGTTGGTGTTACCAACCGGGACTAAAGGAAATTTT
ATGATATTTTTTTTTGAAAT-TTTTT-TTGTCAAAT--TTTTTTAA--TT---T-------TTT-----TTTTCAAATTT
CTGAATTATTTTAACCTCTAATCTCTAATCACCACCCCTCATCA-TGCTCAATTTATCCTCTAATCTCTAATCACCCCTC
ATCATTCCAAATCATATAACTTCCCGGACGGTCACCCATCCTCTCACTACTCCAGCCTGAGCACGCTTAACTTCCGGGTT
CTATTCTCCCTCGTTTCCAAGTCTGCACTTGTTGTTTTCCTGACAATAGTAAGATGTTAATTCTATTAACCCTCAGGAAT
TTAGCTTGAGCATGAAGTGACACATTTCACTGTTTGAGTTTGAAACTATTGTTTTAAAAAACAATAATTATTTAGTAACA
CTAATATTTCTGGAATAATTAGTTTGACCATTGTTTGACCACAGTTTGACCAGATTTGACCAAAATTCAAAAA-AAACTG
AAATAATTATTTAGTAACACTAATATTCTAGAATAATTAGTTTGACCATTGTTTGACCACAGTTTGA------------C
CACAATTTGAATTTTTTTGCCTCTCCAGATATTAAAAGCCCCGTATCTTTTTTTCTGTTAGGTTTTTGAGGATTTTGAAA
ATGTTTAACTGGGTTCCCCCGGTTAAATTCAGATGTAACTTTTCGAGTAGATGATTTTTCATAT-AAAAAACTTTTTCAT
CCGAGTTTGTATG
>chr2D_1565
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--------------------------------CACTAGTAGAAAAGGGGGCTTTTGTCCCGGTTGGTAAGGGCCTTTAGT
CCCGGTTTTTGAACCGGGACTAAAGGGTCGTTACTAATGCCTCC-------------------TACACGAACCGGGACTA
AAGGCCGTCCACGTGGACGCAGACTAGAGCTCCACCTTTACTCCCGGTTGGTGTTACCAACCGGGACTAAAGGAAATTTT
ATGATACATTTTTTTTGAAT-TTTTT-TTTGCGAAT--TTTTTTAA--TT---T-------TTTTTTGATTTTCAAATTT
CTGAATTATTTTAACCTCTAATCTCTAATCACCACCCCTCATCACTGCTCAATTTATCCTCTAGTCTCTAATCACCCCTC
ATCATTCCAAATCATCTAACTTCCCGGACGGTCACCCATCCTCTCACTACTCCAGCCTGAGCACGCTTAACTTCCGGGTT
CTATTCTCCCTCGTTTCCAAGTCTGCAAATGTTGTTTTCCTGACAATAGTAAGATGTCAATCCTATTAACCCTCAGGAAT
TTAGCTTGAGCATGAAGTGACACATTTCACTGTTTGAGTTTGAAACTATTGTTTAAAAAAA----AATTATTTAGTAACA
CTAATATTTCTGGAATAATTAGTTTGACCATTGTTTGACCACAGTTTGACCAGATTTGACCAAAATTC-AAAA-AAACTG
AAATAATTATTTAGTAACACTAATATTCTAGAATAATTAGTTTGACCACAGTTTGACCATAATTTGA------------C
ATTT-TTTGAATTTTTTTGCCTCTCCAGATCTTAAAAGCCCCGTATCTTTTTTTCTGTTAGGTTTTTGAGGATTTTGAAA
ATGTTTAACGGGGTTCCCCCGGTTAAATTCGGATGTAACTTTTCGAGTAGATGATTTTTCATAT-AAAAAACTTTTTCAT
CTGAGTTCGTATG
>chr2D_1565
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--------------------------------CACTAGTAGAAAAGGGGGCTTTTGTCCCGGTTGGTAAGGGCCTTTAGT
CCCGGTTTTTGAACCGGGACTAAAGGGTCGTTACTAATGCCTCCCCCCTTTAGTCCCGG-----------------ACTA
AAGGCCGCGGCCACG---------TGGAGCTCCACCTTTAGTCCCGGTTGGTGTTACCAACCGGGACTAAAGTAAATTTT
ATGATATTTTTTTTTGAAAA-A-----------AAA--ATTTGCGA--AT---TTCTTTTATTTTTTTATTTTCAAATTT
CTGAATTATTTTAACCTCTAATCTCTAATCACCACCCCTCATCACTGCTCAATTTATCCTCTAATCTCTAATCACCCCTC
ATCATTCCAAATCATCTAACTTCCCGGACGGTCACCCATCCTCTCACTACTCCAGCCTGAGCACGCTTAACTTTCGGGTT
CTATTCTCCCTCGTTTCCAAGTCTGCACTTGTTGTTTTCCTGACAATAGTAAGATGTCAATTCTATTAACCCTCAGGAAT
TTAGCTTGAGCATGAAGTGACACATTTCACTGTTTGAGTTTGAAACTATTGTTTTAAAAAACAATAATTATTTAGTAACA
CTAATATTTCTGGAGTAATTAGTTTGACCACTGTTTGACCACAGTTTGACCAGATTTGACCAAAATTC-AAAA-AACCTG
AAATAATTATTTAGTAACACTAATATTCTAGAATAATTAGTTTGACTATTGTTTGACCACAGTTTGA------------C
CACAATTTGAATTTTTTTGCCTCTCCAGATCTTAAAAGCCC-GTAAC-TTTTTTCTGTTAGGTTTTTGAGGATTTTGAAA
ATGTTTAACGGGGTTCCCCCGGTTAAATTCGGATGTAACTTTTCGAGTAGATGATTTTTCATAT-AAAAAACTTTTTCAT
CCGAGTTCGTATG
>SNPs
SS-------------------------------------S----------------------------------------
------------------S-------------------------------------------------------------
--------------------------------------------S--------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------S------------S----------------
-----SS----------------S-------------------S------------------------------------
-------------S--------------SS---S------------------------------------S-----S---
------------------S----------------------S--------------------------------------
--------------------------------------------------S-----------------------------
-----------------------S-----------------------------------------S--------------
------------------S---S------------------------------------------------------SSS
SSSS----------------------------S--------------------------------S--------------
------------------------------------------------------------------S-------------
-S------------------------------------------------------------------------------
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----------------------------------------------------S---------------------------
------------------------------------------------------------S-------------------
---------------------------------------------------------S----------------------
-----------------------------------------S--------------------------------------
------------------------S------------------------------------SSS-SSSSSS---------
--------------------------------------------------------------------------------
-------------------S-----------------------------S------------------------------
---S-----------------------------S----------S-----------------------------------
----------------------SSSSS----S-----------------------------------------------S
-------------------------------------------------------------------S------------
------------------------------------------------------------S--------S----------
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-------S------------------S-----------------------------------------------------
----------------------------------------------------------------S---------------
-------------
>forward_959
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-----------------------------------------------------------ACACAAACACACACAACGCT-
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>reverse_3350
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---------------------------------------------------------------------GCTTCCGGGTT
CTATTCTCCC----------------------------------------------------------------------
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