>input_sequence_79175
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--------------------ATGGCCGCCTGTCAGCGTCTGCCAACCTTGGGCGGGAACATGTGCGATGGTGTTGGCGTC
GAGGCCAAAATGAGTTGGTTGCCCTATGCGTCCATCTGCGCAACCATCTCCAGCGCCATGTCCATATGTGCCCAGAAGGG
GCCGGACGATCCGCTTGCTGCTCCTCCCGATCGATGCCAAAAACGAAGGCGAGGGGGTGCTCATCCTGGTGCGCTAGGGA
CAAGGTATTTGTGCTAGATTGGATATGGGAAATTTGGAGTAGTCGAAAATAGGTTAGGGTGAGAGAAGGGGTGATCTCTA
TCTTATAGGCCACAGTCCGCGAGCTCGCCATTAAAGAAAGGAGGTTGGATAGGTCGCAGGAGGGAGACCGGAGGGCGGTC
AAAGACTGACATGGCCTGCTCTTACGCCTCCAAGCTGCAAAGAGTAGCACGACGAGCAACGGAGGATGATCAAAGGCATG
TATTCCTGTGA---------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G340700
CAGGGTGTCCTAGGAATTACAGATGGTCGCAGAATGTATGCTTGCTAAGCAAAATTGGATTTGGAAAATGTAGAAATGAA
GATGGTTTGC-----------------------------AGGAAGCAAACTACAGCTAATGTTAAAGTTAGACCTGATCC
ATCACATTTCATGCATATATCATTTTAAAAGCTACAGGTTTATCTTACAAGTGTTGTAGGAAAAAGATTGAAAAATGCCA
AAGGACCAG------------------------------ATTCTCGGAAGGTTTGTTGGTCGTGTTTGTAGAAA-TTTCA
TGGTCCTTATAATGACCTGACTCTCAGTAGTGACATTTACTAGTAGGTTTTAACAGTTTTCGATGTAGGTTTGGGGCAGA
GCATTAGATATAGGCGAACAGTTTGATGTGAAACCGTGAAAGTGATGATATGTGGCAGCAGGTCCAGTCTCCACTCTCTG
TGTAGCGAGGTCATTTGGCCAGAGCCCAGAGGAGAATGGTAAATGTCAATGGTGGCTAGGCAAGTCTTGTGTGTGCGAGT
TTTTCTGTATATTGATGCATGGTACTCTGAGAGCAGCAGCACAGGTTAGATGCTGCTGAAAATTTTGTGCAAGAATATTG
GGTGTGGATTGCATACCTTTGAACTAAGCTTAGCTTTGTCCCCTAATACAACGGCACCGAGTGAATGTCCTGCCTCTGCA
TAACATGATGCAAACAATGAACACGTTCCACACGACCAAAAGAGAAATATTATTTTAGAGTAATTACTTCTACAAAGGAT
GTTGGAGTACCAGCCTCCTTGGTGCCTCCGCGCGCGAGGAGGTCCTCTGCACCGTTCGTTAGGCGTTGGCAGCGCGCGGG
TTCTTCCCTGGGGCTCTATGCGTTGTTCGATCTACCCGGACGGCTCGCATCCAGGCGTGTCGCATCGGCGGCCCATGACG
GGTGGACCGCGGGCATGGCCGCGGCCACCCTCGTGTGGTGATTTCGGTCGTTGCAGCCGCGAGCGCCCTCTCTCAAGTCC
ACTTGCGCGACGGGGAGGCCATGGCCGCCTGTCAGCGTCTGCCAACCTTGGGCGGGAACATGTGCGATGGTGTTGGCGTC
GAGGCCAAAATGAGTTGGTTGCCCTATGCGTCCATCTGCGCAACCATCTCCAGCGCCATGTCCATATGTGCCCAGAAGGG
GCCGGACGATCCGCTTGCTGCTCCTCCCGATCGATGCCAAAAACGAAGGCGAGGGGGTGCTCATCCTGGTGCGCTAGGGA
CAAGGTATTTGTGCTAGATTGGATATGGGAAATTTGGAGTAGTCGAAAATAGGTTAGGGTGAGAGAAGGGGTGATCTCTA
TCTTATAGGCCACAGTCCGCGAGCTCGCCATTAAAGAAAGGAGGTTGGATAGGTCGCAGGAGGGAGACCGGAGGGCGGTC
AAAGACTGACATGGCCTGCTCTTACGCCTCCAAGCTGCAAAGAGTAGCACGACGAGCAACGGAGGATGATCAAAGGCATG
TATTCCTGTGAGCAACTCTGGTGCGTGTGCATCAATGCATTTTTGGAATCGACGTCGGCGGCAAAGTCCGAGACAGTGGC
AGAACAGCATGCCCGGTGATCATGAGCACGAGCAGAGAGCGACATGATCCTCGCCGTAGGTCAGCTCCCAAGATGAGAGG
CGCTAGAGCATGCAATCAAGGGCAGAAAAATGGGGGAAATGGGGAGGAGCTTGCTGGGAGGCGGTTGGTGTATTCGTATG
AACTTGACAGTGACCGACGATGCCTCATTTGATGAAGGTTTGCCGGTGACAGAAGACGAAGACGACGAAGATTCTAAGGC
GAACGTGTGCTCCTAGCTCGTGGGCGTTGACAGCGAGGAAGCAAGGCGCTTGAAAATCTCCTAGACAAGCTTGCGCGGAC
AGAGGAGGGTGCTCACTACAAAGGCGCCATGGGCGTGCTCCAGGTGCGCTCAGCAACTCCCTTGGGTGACGGGTGATGGC
TGACCGCTGACGGTGTCTCGGCTAGTGGGCCTCTCGCCA-----------------------------------------
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-----------------------------------------------------------------TACCGACTCCCAACA
TGGTGAGCCGGACTGAGGACCCTCATGTGTGTTCCGTCCTGGGCCACTTCCCGGTGGCCCATGATGATCCCAAGGAAGGT
CCGGAAGACTTAT-GTATTCTCCTAGATTTTGGACTTATGGAGAACTTTGTCTTCCCATACGTAGCCGATTAGGACCCCC
GGCTTGATGCCGTGAAGCGGTCGGTTTGTATCAAAGGTGCACGGATGGCCTTCGCCGTGTCAAGGTGCAGTGGGCGAAGA
TGAACGCCGTCAAGCTTCCAACCGAGGGACCGCTCGCAGGCAAAGAGCACCGCACGCCGGAGCGGTATTTCGAGGACGTC
CTGGAAGGATCCCGCATTGTAGAGGGCCAGTGTTCGAAGGACATTATTTTTGAATGAATGTATCCGTGTGGCCCGAACTT
GTATTATGAAACAAGGCTTATGTATGATATGTTGCTTGTTTTACTTTAAAATGTTTCCTCCTGTGCGGCCGTTTACGG
>chr5B_1
CAGGGTGTCCTAGGG-TTATAGATGGTCGTAGAATGTATGCTTGCTAAGCAAAATTGGATTTGGAAAATGTAGAAATGAA
GATGGTTTGCGCTAAATATGGATATTAGATAAATACCGCAGGAAACAAACGACAGCTAATGTTAAAGTTAGGCCTGATCC
ATCACATTTTATGCATATAGCATTTTAAAAGCTACAGGTTTAACTTACAAGTGTTGTAGGAAGAAGATTGAAAAATGCCA
AAGGACCAATTCTTGGAAGGTTTTTTTTTTTTGAAGAATATTCTCGGAAGGTTTGTTGGTCGTGTTTGTAGAAACTTTCA
TGGTCTTTATAACGACCTGACTCTCAGTAGTGACATT------TAGGTTTTAACAGTTTTCGATGTAGGTTTAGGGCAGA
GCATTAGATTTGGGCGAACAGTTTGTGA--------TGAAAGTGATGATATGTGGCAGCAGCTCCAGTCTCCACTCTCTG
TATAGCGAGGTCACGTGGCCACAGCCCAGAGGAGAATGGTAAATGTC---------------------------------
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>chr5A_17
----------------TTATAGATGGTCGCAGAATGTATGCTTGCTAAGCAAAATTGGATTTGGAAAATGTAGAAATGAA
GATGGTTTGCGCTAAATAAGGATATTAGATAAATACTGCAGGAAGCAAACTACAGCTAATGTTAAAGTTAGGCCTGATCC
ATCACATTTTATGCATGTAGCATTTTAAAAGCTACAGGTTAATCTTA--AGTATTGTAGGAAAA----------------
---GACCAG------------------------------ATTCTCGGAAGGTTTGTTGGTCGTGTTTGTAGAAAATTTCA
TGGTCCTTATAATGACCTGACTCTCAGTAGTACA----------------------------------------------
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AACTTGACAGTGACCGACGATGCCTCATTTGATGAAGGTTTGCCGGTGACAGAAGATGAAGACGAGGAAGATTATAAGGC
GAACGTGTGGTCCTAGCTCGTGGGCGTCGACAGCGAGGAAGCAAGGCACGAGGAAATCTCCTGGACAAGCTTGCTCGGAC
AGAGGAGGGTGCTCACTACAAAGGCGCCATGGGCGTGCTCCAGGTGCGCTCAGCAACTCTCTTGGGTGATGGGTGATA--
-----GCTGACGGTGTCTCGACTAGTGGGCCTCTCGCCAGAGACCTCCTATGTGACGCTCTCTGCGTCAAATTGCTGCCG
TTTCGCACAGGCGGGGCTTCGACTGTGCCGGCCCATGAAGACAGCAAACCGAAATCGAACGCGCACTGAGGCTAAAAAAG
TATATATGTGGTAGCAGGGATTCGAACACATGACGCACCGCTATACTGATTAGACCTAAAGAACCATACATGCTGCGCAG
CTCTGAATCAGTTTAGGAATTTCGGAAGCAATAGTTTTTTCGAAAAACGGAATGTTCTGTGAAACGCAAGCACTTTCTAA
ATTTGTGAACAAAATTTTTAAAACTATAACATTTCAAAAAACAAGAACATTTTTTGAAAATCTTGATTTTTTTAAACGAG
ATTTTTTTTCAAATTTCAAAAAAAAAAAGAAACGTGAACATATTTTTAAATTCCTGAATTTTTTTTGCAAACATGATTTT
ATAAAAATCGTGAATTTTTTTTAAAACTGGAATATTTTGTGAAACTACTGAAAAATGAAAACAAGAACATTTTTTAAAAC
GGGAACATTTTTCAAAAATTGTAGAAAAGCTGAACAAAAACATTCCAAACAATATTTGTAAAACAAGAACATTTTCCGAA
ATGTCGGGACAATTTTTGAAAAATGGGAACATTATTTAATTTATGAACAATTTTTTAAAACATGAACATTTTTTGGAAGT
TTGAATGTTTTAACACGAACAAATTTTGAACTTCCCGACCAACTTTCAAAAGAAATGAAAAAACAGATAGAAAACTGAAA
AAAGGGAAAGAAAGAAAAATAGGAACAAAAACACAAGTAGAAAAGGGAACTACAAAAAAATAGAAAACGGGAAAAAGAAA
GAGAAATACGAAAAAAGAAAAAAATGTAACGGAAAAAAGAAAAAGGAAGATAAGAAAAAGAGAAAAACAGGTTAATAAAA
AACTATAAATAAAAAAGTGAAAACCAATAAAAACCAGTTCAGGAACCTTCTAGAAGCTTCCCAAAACCGATCAGAAAACT
TCTAGGAGGTTCCCAAAACTGGAAACTGTAGTGCGTTTTATCTCGTAACTGGGACGACCCACCTGATTCGTTGGTGGCTA
GCTCTCTGTGCGAATCCTCGATAGTTTGACGCAACGCGCGTCCTATACGGTTTTCCCTCTCGCCATACCGACTCCCGACA
TGGTGAGCCCGGCTGAGAACCCTCATGTGTGTTCCGTCCTGGGTCACTTCTTGGTGGCCCATGATGATCCCAAGGAAGGT
CAGGAAGACGTGACGTATTCTCCTAGATTTTGGACTTATGGAGAATTTTGTCTCCTCATACGTAGCCGACTAGGATCC--
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>SNPs
--------------SS---S------------------------------------------------------------
-----------------------------------------------------------------------S--------
---------S---------S------------------------------------------------------------
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-------------------------------------SSSSSS-----------------------------S-------
---------S-S-------------SSSSSSSSSSS-------------------------S------------------
-S-----------SS------S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
--------------------------------------------------------S--------S-------S------
---------S-----------------S-------------------S-SS-S---------S-----------S-----
-----------------------------------------------------------S---------S-------SSS
SSSSS---------------S-----------------------------------------------------------
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----------------------------------------------------------------------------S---
---------S-S-----S-------------------------S------SS----------------------------
-S-------S-SS--------------------------------S-------S-S-------------S-----S--SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_719
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-----------------------------------------------------------AGTGAATGTCCTGCCTCTGC-
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>reverse_1629
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----------------------------CGAGCAGAGAGCGACATGAT--------------------------------
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