>input_sequence_79136
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------------------------------------------------ATGGGAAACTTCAGCTCGTGGTGCGGAGGGGA
GACGTCGTCGAGATGCGTTACCAAGACCGCGACGGGCGCGCACAAATTCGAGGTGACAAACTACTCGCTGCTCGACGGCA
TGGGCGCCGGCAACTGTGTAAGCTCCAACACGTTCAGCGTCGGCGGCTACGACTGGTGCATCAATTTCTTCCCTGACGCG
TACAGTGGCTGCGCGTTCGCCTGCCTATGTCTCCAAGGAACGGCCAAGGAGCCGGGCGTGATGGTGAAGTCCACGCTGAG
CTTTCTGGGGAGCGACGGCAAGCCGTATAAAGGCACGGAACCGGTGACCGCCACACGAACTCTTCCCTTCTCACATGTAG
GTATCGAGATTTTCAGTGGTTGGGAAGATCGGGTGATTGTTGAGAAGTCTAAGCTGCAGGCTGACGGCTGCTGCACCATC
AGGTGTGATCTGACCGTCATGAGAAACACCGTCGCATAG-----------------------------------------
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>chr2D_1_TraesCS2D01G471600
TAACCCCAATCATAACTACTGATCATAACTTTTCATCTGGCTAATTACGTAAAAGTTACGTTAACCCCTTCTTAGGTGTA
GCATTACCCTAAGTTCACAACGCGTTGTGAAAAGGAAAAGAAATGACACGACCCAAAATCCATGGAAGAACTGGATGTCG
GAAGTGTATGTAATT---AAGAAGAACAATAATAATTCTATGCTAAATAAAAAAATTTAGCCATGGTCCAATTCAAAAAC
AGAAAACCTACATTTGCCATGCGAACATGGCAACAATTATATAAAAATTTCCGCCATTTGGGACGCAAAAAATGTCCTAA
----TTTTTTTGCCATGCGAATGTACAAATGTGTAC-------CAATGTTTCAAAAAAAATCC-CTAAAAAGTGGGAATA
TGGGTGGCGGCGACGGGAAGGGCTGGTCGCTCGGGAGGGAGAGAGGGCAGCTGAAATTTTTACTTAGCGCAGCCGAGGTC
GAGTATATTTACGAGTGCTGTTGGAAATTTTTGGCCGGAGGAGGACAAACTTTACTCCGCTCACGGTTTGCGAGTTCGGT
TAGGTCCGGTTAGCCACGTATTTCCCTCTACTAACCGATTATAG------------------------------------
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---------------------------------------------------GGGGTTGGTTAGAGTTGCTATAAGGGCCT
TCGAGTTGTTCACACGAAATTGTACAATACTGCAATCAGACCTATAACGTTTCCG-------------------------
AAAAAAGAAGTCGGTAAAAAAGCATACGCGCGTGTCTAGCTGGTCCGGCGACGTGAGTTTAAAAGGGAAGCAGTGCTGGG
TTGT------------------GTGCGTGCCCTTTTTCTTTTCTTTTTTTA---CATGGATACGATA--GTGTGTGCTTG
TACACGTGTCACCGGCATGTACGTAGTACGA-----------GTTATCTTGGACGATGC--TCCTACTCCGACTTGGTAT
CCTCCTAGTATAGTACTGTAGTCCGTTCTCCTTTCGAGAAAACAGCTTACAAAT----ATAGATGACCAGGTTTCCTTGG
AGCTCACCCGTGCGTTTGCCCTTGGTCCGCCCGCTA-CTTGATTTGCCATGGGAAACTTCAGCTCGTGGTGCGGAGGGGA
GACGTCGTCGAGATGCGTTACCAAGACCGCGACGGGCGCGCACAAATTCGAGGTGACAAACTACTCGCTGCTCGACGGCA
TGGGCGCCGGCAACTGTGTAAGCTCCAACACGTTCAGCGTCGGCGGCTACGACTGGTGCATCAATTTCTTCCCTGACGCG
TACAGTGGCTGCGCGTTCGCCTGCCTATGTCTCCAAGGAACGGCCAAGGAGCCGGGCGTGATGGTGAAGTCCACGCTGAG
CTTTCTGGGGAGCGACGGCAAGCCGTATAAAGGCACGGAACCGGTGACCGCCACACGAACTCTTCCCTTCTCACATGTAG
GTATCGAGATTTTCAGTGGTTGGGAAGATCGGGTGATTGTTGAGAAGTCTAAGCTGCAGGCTGACGGCTGCTGCACCATC
AGGTGTGATCTGACCGTCATGAGAAACACCGTCGCATAGAAGATGCGGCCATCAACAGACCTAGTCGATTGGAATTAATT
ATGGTC---------------------------------GTTGCTTTTCGATTTGCTTGTAATAAAACATGGCTTTTGTA
GACTTTTATACGTAATAAATTCATGGTATTATCTTTAT--ATGCAATCAAAGCTGTGTATGTTCCGCAGGATGGCCACTT
TTGTATCCCTAGTTTACGTTGATCGCACTTTCATCCTACAGTTGCAAATAGAAAGAACTTTTTTTTTGTCTGTAGACTTG
GTTGAATCTTGTAACCTTGATACTGCATAAAGCCGAAAAGAACTAGACTCTTTTATGTCTCCAAGTTTTAGCAAGGTTGG
ATTTAGTTTTCAGGAGCATGTATATACTATTCCCTCTCTTTTACATTTTTTAAAATCAAAATTGCAGGGGTCACATCTTT
GCCGAGTTTCGGCTATTGGAGGCTCGCCGAGTTTATTATGGGCTGTGCCGATTTTTTCCAAACTCGGCAAGAAGAACGAT
TCTGGTTGTGTCATCACCCACGGACCATGTTGGCAAGGTGCCTAATAGCCAGTGACATGATGAGTAGAGCAAATATGTGT
ATAACTTAGTAGTTGGTTCTCACTACTTTTATTTATCTCAACATGTCATCTTAGCAAACATACCACCTCATCGAAAGCCT
G-CTCAATATGCATGGTCATTATTAGTTCCCATTACTTGCAT--------------------------------------
-------------------------GTACACATGTCATCTTAGCAAACACGTCACCTCAACAAAAGCCCACCTCAATATG
CATGGTGATTATTACTTCCCA-TTATTTCTATTTATCTCAACATGCACGCATCCCATGTCACCTCATATAAGGTCCACCA
CAACATTTATGTGAACACGTTTTCCATTATATTATGCAACTTATATCCAATAAAAAAATTAACTGCAAAATAATCAAATA
CAATATATAATATGAATCATCAGTTTCAACTAATATATTAATAATTTAAACATTCATGTTTCATACTATCAAATCTTATT
ATAATTATTGCATCTAATT
>chr2A_1
TAACCCCAATCATAACTATTGATCATAACTTTTCATCTGGCTAATTACGTAAAAATTATGTTAACCTCTTCTTAGGTGTA
GCATTACCCTAAGTTCACAACGCGTTGTGAAAAGGAAAAGAAATGACATGACCCAACATCCATGGAAGACCTAGATGTCG
CAAGTGAATGTAATTAAGAAGAAGAACAATAATAATTCTATCGTAAATACAAACTTTTAGCCATGCTCCAATTCAAAAAT
GGAACACCTACATTTGCCATGTGAACATGGCA-----------------TCCGTCATTTGGGACACAAAAAAAATGTCCT
AAGTTTTTTTTGCCATGCGAATGTACAAAAGTACAAAAGTGTACAATGTTTCAATTTTTTTTTACTAAAAAGTGGGAATA
GGGGTGGCGGCGGCGGTAAGGGGG------------------GAGGGCTGCTGAAACTTTTACTTGGCACGGCCAAGGTC
TAGTATATTTAGGAGTGTTGGTGGAAGTCTTTGGCCGGAGGAGGATAAACTTTACTCCGCTAACGGTTTGCGAGTTCGGT
TAGCCCA-----------TATTTTCCTCTACTAACCGATCGGCTTTGCTATATCAACGGAGCTTTACGGGGCTTGGCGCC
CACCCCCACCAGTTAAAATCAGGGGGCCCAATTAATTAGGAGGAGATGGTTATTTAGTCCAATTAAAAAGGAACAAGTCA
GCAAGTCTGTAAAATCCTGTTGCTTTAGGCCCTGTTTGGTTCGGCTGTGGATTTCTAAAAGCAGCTGTGAAAAATCTGTT
TTGAAAAAACAGCTGTGGAAAATCTGATGTGAAAAAGATGTAGGTCATTTGGCAAACCAGCTGATACAGCTTTTTCAAAT
TTTGGCCCGCAGCAGAATCAGATTTTGAAAAGCACGTCCTGGACTGCTTCCGCCTTTGATTCAGATTTTGGCAGCGGATT
TCTGAAATCGGATTCTGCTGGATTCGTCCTTTGATTCAGATTCTGCTGCACGGCAGCGGAATTCATCGATAAAAGCTGAA
CCAAACAGGGCCTTAGTCCGTGTATCTAGCATTTTTGCTAACCGATTATATGGGATCGGCTAGACTTGCTGTAAGGGCCT
TCGAGTTGTTGACGCGAAATTGTACAATACTGCAATCAGATCTATAACGTTTCCAAAATAAGGAGTCGGTTTCCCTCAAA
AAAAAAGGAGTCGGTAAAAAAGCATACGCGCGTGTCTAGCTAGTCCGGCGACGTGAGTTTAAAAGGGAAGCAGTCCTGGG
TTGTGTGCGTGCACTCACTCTAGTGCGTGCCCTTTTTCTTTTCTTATTTTATTACATGGATACGACAGTGTGTGTGCTTG
TACACGTGTCACCGGCACGTACGTAGTTCGTGCGACGTACCGGTTATCCTGGACGATGCTCTCCTACTCCGACTTGGTAT
CCTCCTAGTATAGTACTGTAATCCGTTCTACTTTCGAGAAAACAGCTTACAAATGTATATAGATGACCTGGTTTCTTTGG
AGCTCACCCGTGCGTTTGCCCTTGGTCCGCCGGCTATCTTGATTTGCCATGGGAAACATCAGCTCTTCGTGCGGAGCGGA
GACGTCGTCGAGATGCGTCACCAAGACCGCGACGGGCGCACACAAATTCGAGGTGACAAACTACTCGCTGCTCGACGGCA
TGGGCGCCGGCAATCATGTAAGCTCCAAAACGTTCAGCGTCGGCGGCTACAACTGGTGCATCCATTTCTGCCCTGACGGG
TATGCTGGCCAAGCGTACGCCTACCTATGTCTCCAAGGAACGGCCAAGGAGCCTGGCGTGACGGTCAAGTCCACGCTCAG
CTTTCTGGGGAGCGACGGCAAGCCGTATAAAGGCACGGAACCGGTGACCGCCACACGAACTCTTCCCTTCTCACATGTAG
GTATCGAGATTTTCAGTGGTTGGGAAGATCGGGTGATTGTCGAAAAGTGCAAGCTGCGGGATGACGAGTGCTTCACCATC
AGGTGTGATCTGACCGTCATGAGAAACACCGTCGCATAGAAGATCGATCTAGCCAGCAGCAGACCCTCCACTGGAGTAAT
GGCCTTTTTTTAAGGTTGATTTGAGTAATGGCATAGATAGTTGCTTTTCAATTTGCTTGTAATAAAACATGGCTTTTGTA
GACTTTCA----TAATAAATTCATGGTATCATCTTTATGTATGCAATCCAAGCTGTGTATGTTTCGCAGGATGGCCACTT
TTGTATCCCTAGTTTACGTTGATCACACTTTCATCCTACACTTGCAAATAGAAAGAACTTTTTT-----CTGTAGACTTG
TTGGA-TCTTGTAACCTTGATACGGCATAAAGCCGAAAAGAACTAGACTCTTTTATGTCTCCAAGTTTTAGCAAGGTTGG
ATTTAGTTTTCAGCGGCATGTATATACTATTCCCTCTCTTTTACATATTTAAAAATCAAAATTGCAGGTGTCACATCTTT
GCGGAGTTTCGGCTAATGGAGGCTCGCCGAGCTTATTATGGGCTCTGCCTATTTTTTCGCAACTCAGCAAAAAGAACGAT
TCTAGTTGTGTCATCACCCACGGACCATGTTGGCAAGGTGCCTAATAGCCAGTGACATGATGAGTAGAACAAATATGTGT
ATAACTTAGTAGTTGATTCTCACTAGTTTTATTTATCTCAATATGTCA--------------------------------
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>chr2A_2090
CTCAATATGCATGGTCATTATTAGTTCCCATTACTTACATGTACACATGTCACCTTAATTAGAAAAAACCCACCTCAATA
TGCATGATCATTATTAGTTCCAATTACTTACATGTACACATGTCACCTTAGCAAACATGTCACCCCTTCTAAGAAAAAGC
AA------------------------------------------------------------------------------
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---------------------------------------------------------ACATGTCACCTCAGCAAAAACCC
ACCTCAATATGCATGGTCATTATTAGTTCCCATTACTTGCATGTACACATGTCATCTTAACAAACATGTCACCTCAACAA
AAGCCCACCTCAATATTACTTGCATGTACACATGTCATCTTAGTAAACATGTCACCTCAACAAAAGCGCACCTCAATATG
CGTGGTCATTATTACTTCCCATTTATTTCTATTTATCTCAACATGCACACATCCCGTGTCACCTCATCTAATGTCCACTA
CAACATGTATGTGAACACGTTTTCCATTGTATTATGCAACTTATATCCAATAAAAA-ATTAACTGCAAAATAATCAAATA
CAATATATAATATGAATCATAAGTTTCAACTAATATATTAATAATCTAAACATTCATGTTTCATACTCTCAAATCATATT
ATAATTATTACAATTAATT
>SNPs
------------------S-----------------------------------S---S-------S-------------
------------------------------------------------S--------------------S----------
S-----S----------------------------------SS------S---SS----------S-------------S
S---S----------------S----------SSSSSSSSSSSSSSSSS----S----------S-------SS-SSSSS
-----------------------------S--SS-S------------------SSSSSS-SS-----------------
S-----------S---S-----SSSSSSSSSSSSSSSSSSSS------S-------S--------S--S-S---S-----
S----------S-----S--S-----S-S----------------S---------------S------------------
---SS-SSSSSSSSSSSS-----S---------------SSSSS------------------------------------
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------------------------------------------------------S-S--S----S-----S---------
----------S--S--------------------------S-------------S-------------------------
-------S---------------------------------S--------------------------------S-----
---------------------------------------------S-------------------S--------------
-----------------S---------S--S-----------------S-------------------------------
--------------------S--------S--------------------------------------S------S----
-------------------------------S-------------------------S-------S-S--------S---
------------------S--------------------S----------------------------------------
-------------SSS------------S---------------------S-----------S------S--------S-
--SSS----SSS----S-----S------------------------------S-------S---S-----------S--
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----------------------------------------S--S----SS-------S--S-----SS----S-------
--------------------------------------------SSSS-S-S-S-SSSS-SS-SS-SSSSSSSSSSS-S-
SSSS-S-------------------------------------------S------------------------------
------S-SSSS-----------------S------------------S--------------S----------------
------------------------S---------------S-----------------------SSSSS-----------
S-S--S-----------------S--------------------------------------------------------
-------------SS-------------------------------S---S-----------------S-----------
--S------------S---------------S------------S----S--------SS-----S----S---------
---S----------------------------------------------------------------S-----------
---------------S---------S---------------S------SSSSSSSSS----SS-------S-S---S--S
S-------------------------------------------------------------------------------
-------------------------------------------S-----S-----------------S------------
-S----S-----------------------------------------S------S-----------S---S------S-
------S---------------------S---------------------------S-----------------------
--------------------S------------------------S---------------------S-------S----
---------S--SS-----
>forward_567
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-------------------------------------------------------------------TTGCGAGTTCGGT
TAGGTCC-------------------------------------------------------------------------
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>reverse_2702
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-------------------------------------------------------------ACCACCTCATCGAAAGCCT
G-------------------------------------------------------------------------------
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-------------------
