>input_sequence_79108
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-----------------------------------------------------------------------------ATG
ACGAAGAGGCACGGTCCTGCCGCCCGAGTTCACCGCGTTCACCCCCTTCTTCTCCTCCTCGCGGCCGTCTTGCTGCTCGC
TGCCACGGCTGATGGCATCAGACCGGGCCCCGGTAAGTTCAACCGCATGAATGATCTCTATGTGCAATGCCATCTTCTTC
GCATGGGAATATGAATCTAACTTGAATCACATTC-TGGCAGATGATGCTGATGCGAAACCGGCAGTGCAGCGTGCACGGC
CGGGGCAGGCGCCTGGTGC---GGCGACGGCGACGGCGACGGAGGAGAAG------------GGGTTCCTGCAGGAGGAG
GTGTACGGGACGGGGTCGAGCCTGCCGGACTGCACGCACGCGTGCGGCGCCTGCAAGCCGTGCAACCGCGTCATGGTCAG
CTTCAAGTGCTCCATCGCCGAGCCCTGCCCCATGGTCTACCGCTGCATGTGCAAGGGCAAGTGCTACCCTGTCCCCTCAA
GCTAG---------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G556200
GGGGCTGTCAGTTGGATTTCTGCGTGGGAAATCACGAAAACCTG--------CCATTTCCACTCTCGTCCTCTATGCCAA
GAACTGAACCTGATTATTCCCTGCTTTTCTCATAGCATAA--CAGTTAGCTGTTGTGGATTCCACGGGACCATCGCCCGC
CGGCCAGCACTTCACTCTCTCTACTCACGGATGGATGGCC--ATTAACTAATCCATGAGCAGGTCCTGTTCCACTCCAGT
TGCAGCCAAAGCCTGCCCAGACGTA----CGCGCACAGTATCTCTCAGAGCGCAGAGGACGGCAGGCAGAGCTCATGAGG
GTCACGCGCGCGCGGTGGGTCGTCGACGGACACGGGGGCGCGGGCGAAAGCAGAGTAAATGAGCTCGGCTTCATTGAAGG
CTCCCGCGCGGTCACGACGACGGTGGCCGCCTCACGCGCGCGCGGTGGGCCGGCCGTCGACGCTGGCTGGCGCTAGCGGG
CGGGCTCGCCGTGAAATGAAATTCAAACGAGCGAGCACTCGGCGGTTTTCCCGCCGTGCTCCGAGGC------CGTGGCG
GCGTGGCCATGCCCGTGCGCCATTAATGAAGGCGCT--CTGCGCGTATCCGCGCCAGGAGGCGAACCGTTTAATGGCTTG
TCTCTCTCTCCCTCTCTCTCTGACTGCCTCGCCCGCCTGCGAAACTGTCCCGGCGCAGCGGTGGCAGGCAGGGCAGCGGG
TCACTGGATCCGTGTGATGGAGTTCGAGCCGCCGGGGGCGTGCCGGGGATCATGTGACGCACAATCAAAGATCCCCGCGG
CTGCCGCTGCGTGCATGCGCGCGCGCGTCCCGCATCAATGGCCGCGCCCGACGCGGG-------TATATATGTGCGCGGG
GCGCGTCCTCCGTGTACTCCCCCGCAGCCTGCTCCTGCTCTAGAGTACGTCGCGTTGCACCGTGCCCTCCAAAGCAGGCA
GCTCTTGAGTGTCACCGTGCACCGTACCG----GCGCGAGCTCTTGGTACGCGCGCACGCGGGATTCTTGGGAA--GATG
ACGAAGAGGCACGGTCCTGCCGCCCGAGTTCACCGCGTTCACCCCCTTCTTCTCCTCCTCGCGGCCGTCTTGCTGCTCGC
TGCCACGGCTGATGGCATCAGACCGGGCCCCGGTAAGTTCAACCGCATGAATGATCTCTATGTGCAATGCCATCTTCTTC
GCATGGGAATATGAATCTAACTTGAATCACATTC-TGGCAGATGATGCTGATGCGAAACCGGCAGTGCAGCGTGCACGGC
CGGGGCAGGCGCCTGGTGC---GGCGACGGCGACGGCGACGGAGGAGAAG------------GGGTTCCTGCAGGAGGAG
GTGTACGGGACGGGGTCGAGCCTGCCGGACTGCACGCACGCGTGCGGCGCCTGCAAGCCGTGCAACCGCGTCATGGTCAG
CTTCAAGTGCTCCATCGCCGAGCCCTGCCCCATGGTCTACCGCTGCATGTGCAAGGGCAAGTGCTACCCTGTCCCCTCAA
GCTAGCTCAGCTCAGCTGAGATGATTTCCCACGCGCACGCACACACGGCTGATGCAG------ATGCAGATGGT---GCA
GAGTAATATGCCGATCTAGTTATATGT-GAATTTTTATGCTGGTGTTCGATCACCATGATGATATGACGGCATTTTGTAA
ATTATGACTC----GGTGGCTAGCTAGCTGGCTA-------------------------------------TTTTGGAGC
ACATGAAACACTTGTTATATCTACCAAATCTTTTGTTGATTGTTGGTTTAAGATAGCTGCTCGGTTTATTGTTAAGAAAA
TCGTTAACAGGTAGCTGCTCGGTTGGTTGGTGAGTAGGGAATTAATAGGCTAATCAGTTAATCAGACGGTTTATCAGTTT
ATCGGCTACTCGGTGACCCTACGAGTAGGGAATCGGCAAGTTAACTGGTTAATTGGACGAATTCTTGAAATATCTGCA--
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--------------------------------------------------------------------AAATCTTTGGCA
CACGCTAAGTATCACTTTTTGGAAATATAT--GGAAAAAATATCAATCGATTTAGACATAGATGAAC-CCTAAAAATAGT
TGTCGTCTTTTATGATTTTACGTGAGTCTTTTATTTTTTGCTTACTGTA-----CTGCGGGATAATACCAAAAAACACTG
TCAGTAGTGGACTAAGCCGAAAACCTGCACCTAGCATTGCAAAAGATAAACTACCTTAGACTATTTTTT-CTTCCAAAAA
ACCTTGTAGGGTTGAGGTGTGGACCCCAAACTTTAGGTAAAAATATTTGTCGTTTCATGTGTTGTGGAAAAAGAGAGGAT
ATCCTTTCTAACATAAAGTCTTAC--ACCATACTCTTCCCACAAAGTAAGTATTTTTTTCCTTTCAAAACTTAGAATGTA
CGGATTTTGACGTGGATCATACATAAGCACATGACTATTTGTAACCTGGCTTGATTCTATATATGAAAGGA-AAAGGTAC
AATTTGGCCCTTCAAATATTGGCAAAGTTTAATTTAGGTCGCTCTACTGCAACACTATAAATACTGGCCCCTCAAGTGTA
AAACCATTTGGATTTTAC
>chr2A_1
GGGGCCGTCAGTTGGATTTCTGCGTGGGAAATCACGAAAACCTGAGATGCATCCATTTCCACTCTCGTCCCCCATGCCAA
GAACTGAACCTGATTATTCCCTGCTTTTCTCATAACATACTCCAGTTAGATGTTGTGGATTCCACGGGACCATCGCCCGT
CGGCCAACACTTCGCTCTCTCTACTCACTGATGGATAACC--ATTAACTAATCCGTCAGCAGGTCCTGTTCCACTCCAGT
TGTAGCCAAAGCCTGTCGAGACGTACGCGCGCGCACAGTCTCTCTCAGAGCGCAGGGGGCGGCAGGCAGAGCTCATGAGG
GTCACGCGTGCGCGGTGCGTCGTCG------ACGGGGGCGCGGGCGAAAGCAGAGTAAATGAGCGCGGCTTCATTCAAGG
CTCCCGCGCGATCACGACGA----------------------CGGTGGGCCGGCCGTCGACGCAGGCTAGTTA-------
--GGCTCGCCGTGAAATGAAATTCAAACGAGCGAGCACGCGGCGGTTTTCCCGCCGCGC------GCCGAGGCCGTGGCG
GCGTGGCCATGCCCGTGCGCCATTAATGAAGGCCCTGCCTGCGCGTATCCGCGCCAGGAGGCGAACCGTTTAATGGCTTG
--TCTCTCTCTCCCTCTCTCTGACTGCCTCGCCCGCCTGCGAAATTGTCCCGGCGCAGCGGTGGCAGGCAGGGCAGCGGG
TCACTGGATCCGTGTGATGGAGTTCGAGCCGCCGTGGGCGTGCCGGGGATCAGGTGACGCACAATCAAAGATCCCCGCGG
CTGCCGCTGCGTG-------------------CATCAATGGCCGCGCCCGACGCCGCCCCGGTATATATATGTGCGCGGG
GCGCGTCCTCCGTGTACTCCCCCGCAGCCTGCTCCTGCTCTAGAGTACGTCGCGCTGCACCGTGCCCTCCAAAGCAGGCT
GCTCTTGAGTGTCACCGTGCACTGGCACCGCGCGCGCGAGCTCTTGGTGTCGA------------------GAA--GATG
ATGATGAGGCATGGTCTTGTCGCCCGAGTTCACCGCGCTCATCCCCTTCTTCTGCTCCTCGCGGCCGTCTTGTTGCTCAC
CGCCACGGCTGATGGCATCAGACCGGGCCCCGGTAAGTTCAGCCGC----ATGATCTCTACGTGCAATGCCATCTTCTTC
GCATGTGAATCTGACTCTAACTTGCATCTGGTGGGTGGCAGATGATGCTGATGCAAGACCGGCAGTGCAGCGTGCACGGC
CGGGGCATGCGCCTGGTGCTGCGGCGACGGAGACG------GAGGAGAAGAAGGATGTGTCGGGGTTCCTGCAGGAGGAG
GTGTACGGGACGGGGTCGAGCCTGCCGGACTGCACGCACGCGTGCGGCGCCTGCAAGCCGTGCAACCGCGTGATGATCAG
CTTCAAGTGCTCCATCGCCGAGCCCTGCCCCATGGTCTACCGCTGCATGTGCAAGGGCAAGTGCTACCCCGTTCCCTCCA
GCTAGCTCAGCCCAGCTCACATGATTTCCCCCGCGCACGCACACACGGCTGATGCAGATGCAGATGCAGATGGT---GCA
GAGTAATATGCCGATCTAGTTATATG-GGAATTTTTATGCTGGTGTTCGATCACCATGATGATATGATGACATTTTGTAA
ATTATGACTC----GGTGGCTAGCTAGCTGGCTAGTCCATGCACTGAGACGGTTTCTCAAAC----AGTGTTTTTGGAGC
ACATGAAACACTTGTTATATCTACCAAATCTTTTGTTCATTGTTGGTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAATCTTTGGCG
CAC-CTAAGTTGCACTTTTTGGAAATGTATATGAAAAAAATATCAATCGACTCAGACAAAGATGAAC-CCTAAAAATAGT
TGTCGTCTTCTATGTTTTTATGTAAGTCTTTTC-TTTTTGCTAACTGTAAATATCTGCAGGATAATACCAA--AAACACT
TTAGTGGTGGGTTAAGCCCAAAACTTGCACC---CAATGCAAAAGAAAAACTACGTTGGGCTATTTTTT-CTTACAAAAA
AC------------------------------------------------------------------------------
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>chr2D_1
GGGGCCGTCAGTTGGATTTCTGCGTGGGAAACCACGAAAACCTGAGATGCATCCATTTCCACTCTCGTCCTCCATGCCAA
GAACTGAACCTGATTATTCCCTGCTTTTCTCATAACATAA--CAGTTAGCTGTTGTGGA----------CCATCGCCCGG
CGGCCAACACTTCACTCTCTCTACTCACGGATGGATAACCATATTAACTGATCCATCAGCAGGTCCTGTTCCACTCCAGT
TGTAGCCAAAGCCTGTCCAGACGTA----CGCGCACAGTCTCTCTCAGAGCGCAGAGGACGGCAGGCAGAGCTCATGAGG
GTCACGCGCGCGCGGTGGGTCGTCGACGGACACGGGGGCGCGGGCGAAAGCAGAGTAAATGAGCTCGGCTTCATTCAAGG
CTCCCGCGCGGTCACGACGA----------------------CGGTGGGCCGGCCGTCGACGCTGGCTAGA---------
-GGGCTCGCCGTGAAATGAAATTCAAACGAACGAGCACTCGGCGGTTTTCCCACCGCGC------GC------CGTGGCG
GCGTGGCCATGCCCGTGCGCCATAAATGAAGGCGCT--CTGCGCGTATCCGCGCCAGGAGGCGAACCGTTTAATGGCTTC
TCTCTCTCTCTCTCTCTCTCTGACTGCCTCGCCCGCCTGCGAAATTGTCCCGGCGCAGCGGTGGCAGGCAGGGCAGCGGG
TCACTGGATCCGTGTGATGGAATTCGAGCCGCCGGGGGCGTGCCGGGGATCATGTGACGCACAATCAAAGATCCCCGCGG
CTGCCGCTGCGTGCAT------------CCCGCATCAATGGCCGCACCCGACGCGGG-------TATATAGGTGCGCGGG
GCGCGTCCTCCGTGTACTCCCCCGCAGCCTGCTCCTGCTCTAGAGTACGTCGCGTTGCACCGTGCCCTCCAAAGCAGACA
GCTCTTGAGCGTCACCGTGCAC-----CG----GCGCAAGCTCTTCCTTGGTGCCTACGCGCGCATTCCTGGTCGTGATG
ATGAAGACGAGCGGTCTCGCCGCCCGAGTTCACCACGCTCGT---CTTCTTCTCCTCCTCGCGGCCGTCTTGCTGCTCGC
CGCCACGGCTGATGGCATCAGACCAGGCCCCCGTAAGTTCAACCTC----ATGATCTCTATGTGCAATGCCATCTTCTTC
GCATGGGGATCTGACGCTAACTTCCATCTCCTCC-TGGCAGATGACCA------------------------TGCACGGC
CGGGGCAGGCGCCTGGTGC---GGCGACGGCGACG------GAGGAGAAG------------GGGTTCCTGCAGGAGGAG
GTGTACGGGACGGGGTCGAGCCTGCCGGACTGCACGCACGCGTGCGGCGCCTGCAAGCCGTGCAACCGCGTGATGGTCAG
CTTCAAGTGCTCCATCGCCGAGCCCTGCCCCATGGTCTACCGCTGCATGTGCAAGGGCAAGTGCTACCCCGTGCCCTCCA
GCTAGCTCATCTCAGCTCAGATGATTTCCCCCGCGCACGCACACACGGCTGATGCAGATCGATGGAGGGAGCAGACAGCA
GAGTGATATGCGGATCTTGTTATGCGTGGATTTTGTATGCTGGTGTTCTATCACCATGGTATGATGCATCTCTTTTGTAA
ATTATTATGACTCGGGGGACTAGCTGGCTGGCTAGTCCGTGCACTGAGAAGGTTGATTTCTCAGCTAGTGGTTTTGGAGC
ACATGAAACACTTGTTATATCTACGAAATTTTTCGTTGATTGTTGGTTTTAAGATAGCTAACCCCTCACGCGAATCGGTT
TATATCTA------------------------------------------------------------------------
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-----------------------------------------------------------------------------GCG
CACGCTAAGTTGCAATTTTTGGAAATGTAT--GAAAAGAATATCAATCAACTCAAACATATAGATGAACCTAAAAATAGT
TGTCTTCATATGTGGTTTTAC-TAAGTCTTTTC-TTTTGGTTGACTGTAAGTTTCTGCAGGATAATACCAA--AACACTG
TCAGTAGTGGGTTAAGCCGAAAACCTGCACCTAACATTGCAAACCTAAAACTACCTTAGGCTATTTTTTTCTTCCAATAA
ACATAGTAGGGGTGAGGTTCGGACCCCAAACTTACGATAAAAATAATTGTTGATTCATGTGTTGTGGAA----AGAGGAT
ACCCTTTCTAACATAAAGTCTTATAAACCATACTCTTCCCACGAACTAAATATTTTTTCTC--TCAAAACTTAGAATGTA
CGAACTTTGACGTGGGTCGTACATAAGCATGTGACTATTTATAACCTGGCTTGATTCTATATATGAAAGGAAAAAAGTAC
ATTTTGGCCCTTCAAATATTGGCAGAGTCTAAGTTTGGTCTTTCTACTTCAACACTATAAATATTGGTCTCTCAAGTGTC
AAACCATTTGGAT-----
>SNPs
-----S------------------------------------------------------------------S-------
----------------------------------S--------------------------------------------S
------S-----------------------------SS------------------S-----------------------
--S------------S-----------------------S----------------------------------------
---------------------------------------------------------------------------S----
--------------------SSSSSSSSSSSSSSSSSSSSSS--------------------------S-SSSSSSSSSS
S-------------------------------------------------------S--SSSSSS---------------
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----------S---------------------------------S-----------------------------------
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----------------SSSSSSSSSSSS----------------------------------------------------
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----------------------S-SSS---------------------SS-S--SS-----S-SS-SSSS----------
-S--------------S--------------------S---S--------------------------------------
S---------------------------------------------SSSS------------------------------
----------S---S---------S---S-S-S---------------------S-S-----------------------
-----------------------------------SSSSSS---------------------------------------
-----------------------------------------------------------------------S--------
---------------------------------------------------------------------S--S-----S-
-----------------S------------S-------------------------------------------------
-------------------------------------------------------------------S-S----------
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-------------------------------------------------S-SSSSSSSSSS-SSS-S-SSSSS-SSSSSS
-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
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-------------------------------------------------------------------------------S
----------SS--------------S------S----------------S-S---------------------------
---------S----S--------S--------SS--------S---------------S------------SS-------
----------SS---------------------S------------S------------S--------------------
--S-S------S------SS-------------SS-S--------S----S-S----------------SSSS-------
-S---------------------S------------------S--S---S--------SS-SS-----------------
--S-S----------S--S----------SS---------S----------------------------------S----
-S----------------------S---S---S--S----SS------S--------------S---S-S---------S
-------------SSSSS
>forward_243
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---------------------------------------------------------------TCCTGTTCCACTCCAGT
TGC-----------------------------------------------------------------------------
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>reverse_1857
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----------------GCTCGGTTGGTTGGTGAGTA--------------------------------------------
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