>input_sequence_79097
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-------------------------------------------------------------------------------A
TGGCAGAGGAGAGGAGCCCCCTGCACCTGCCTCGCCACAAGGAGGAGGACAAGGAGGGGGAGGAGAAGCAGCATGGCCAC
GACCACGGTCACAACCACAGCCAC------------------GGCCACGGCCACGACCAGC------------GGGAGCA
CGCCGGCGGGAGGGGGGTGGACATGGACCTG------CCGGCGACGTACGTCAACATGGGCTCCATCGCCACCGCGGGCG
TTCTCGTACGCACCGTATCGCGCACACGATTTAGCTTACTGATTCTGACGGTTTGTTTGCGACGCTCACTGGCTAGCTAG
CTTCCTGTACGCGTGTGCAGGACTGGAGGTACCAGAAGGCGACAGGGGAGAAGAGGCCGGACAAGGTGATCGGATTGATC
AGCGCGGAGCAGGCCAAGGAGGCCGAGCGCAGGGAGGCGGAGGAGCGCAAGGCGGAGGAGGAGG---GCGGGGCCGCCTG
GGCCAAGAACAAGCACGTCTACCAGTTCTGA-------------------------------------------------
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>chr6B_1_TraesCS6B01G424200
TAACCAAAAGGTCCAACATAAGTCTTGAGGTCTCAAACAAAAAGAAAAAATGCTCACAAAGAGAATGAATGTAAAAATAG
GATAGCCACAACCGGCAGACAAAACATAAGATAGAAAACTAAACACCTATCCTATTACATGATCAACATCCAAACCGGTT
GAAGATAGCCCGTGCTACCGTCTTCCATCGAATAGATCCGGTAACTAAATGCTCCCTGGCCTCCGTCGGAGTGAGTAGCG
ACCACATATAGATGAGTGTAATGTTCCAAAGTAAGTGTCTTAACTTTTAATACAACTATTATTACAAATTTGACATACTT
ATTTTGAGACGAAGGGAGTATGTAACACCATTATTGAGCATATACATGCAAATTTGAGACACTTATTTTCAAATGAAGGG
AGTATATAACACCATTATTGAGCATATACATGCACATGTTCTAGCTGGGAATGACCCCCTGATTTATCGCCTATACATGA
CATTAGGTGCTTGGCTGGCTCGTCGACGACCACACAAACACTTCCTTCTTGAATTGGGGACGGGTCCTCGGCCCGGTCCA
TAAATGTCAGGCCAATGTGGCGTGCACACCCAATCCAGGACAGTGTCACTGATGCTGTA-------TACTTCATAGAATA
GAATACAATATATGATTGAGTAGCTGTAGTTCACCGGCGCTTTGCTGGCTCGTCGACGGCCAGGTAAACACTTCCCCATT
CGGCTGGTCTGGAGTCTAGAGAGGGCGCGACGTCACCATCGTCGGCGA----TATGTAGCAGATATCTGCGGCGAGCGAC
AGAAAACAAACCCTTCATCACTCAGATGGCAACGTATATCCACACGTGTAGGCCACACAATCATACTATCGATATAATTA
AATCG---TTCATAAATTTGAGTAGGTGACATATATCCTTCACCTAAGCTCTACGACTATATATAAAACCCGCTTGAGTC
GTCGTACACGCCGTGC-------------------------AATTCTTAATCAGGAGAAGAAAAGGAGAGCATCCAGCCA
TGGCAGAGGAGAGGAGCCCCCTGCACCTGCCTCGCCACAAGGAGGAGGACAAGGAGGGGGAGGAGAAGCAGCATGGCCAC
GACCACGGTCACAACCACAGCCAC------------------GGCCACGGCCACGACCAGC------------GGGAGCA
CGCCGGCGGGAGGGGGGTGGACATGGACCTG------CCGGCGACGTACGTCAACATGGGCTCCATCGCCACCGCGGGCG
TTCTCGTACGCACCGTATCGCGCACACGATTTAGCTTACTGATTCTGACGGTTTGTTTGCGACGCTCACTGGCTAGCTAG
CTTCCTGTACGCGTGTGCAGGACTGGAGGTACCAGAAGGCGACAGGGGAGAAGAGGCCGGACAAGGTGATCGGATTGATC
AGCGCGGAGCAGGCCAAGGAGGCCGAGCGCAGGGAGGCGGAGGAGCGCAAGGCGGAGGAGGAGG---GCGGGGCCGCCTG
GGCCAAGAACAAGCACGTCTACCAGTTCTGATCGATCGCCGCCGGGCGCCGCGCCCGGCCGTGCATCTCGCGGCAGATGG
TGTTCTGGATGACAAAAGTTCGCGAGATGATGGTTTC---TTCTACCGTGCAGACTATATA--GCGTGCATGTATCCACC
GCTCATCGTTACTTGGAGATTGGTGCTACGTTTTCTGGTTTTGTCAAAAGCTTGTCTTGTTTCAGAGTGCTGCATGTTGT
TTCGTCGATGTCTTTTTTTCCTAAAATGTATCGTAATGTGTTGTTGTGTGC---------------CAGTAAAATAAGAG
GGTATACTTGTCAGATTTGTATGTAATTTTTCAGACGGTATGTGCTCTTGGAAGGTGAAAATAAGATGCCATCTCGCAAA
TTTCTATATGTTTTTAACGTCTAGTGTT--TTTAACTCATTAATTTTAGCATATAAGAAAATTACCATTAAAGTTACAAG
TGTTCATAGTCAAGTGGGATGCGAAATATATGCGCTCTCCAAAAGTATAGTGTAATAAGTAGGGGATGCGGAAGGCAGCT
CACGACTGAAATCGAGCTACCTTACATGTAGGGTCTGCTTGGACTACAATCGTGAGCTGCCTTACCAACATATTGGTGTT
GACCAACTGCATGGGCCTTCCTTTGGATTGTAACCAATTTGTTTGCTCTTCCCTGATTCTGCACTAACTTCCTATCCACT
CGTCTATTTTTTTCGCCCACGCGCTGGCGAGCCCGTGGCGGCAAATTTTTCCGCCAATAATTTGGCGTAACCAACTTTGG
CGTGGCTAGTACAGGCGCTATCCAAACACACTCCTAGTCCCCCATTTGCATAAAACGCATTCTGCACCGGAAATCCTTGA
ACAACTAGGTCAAAACATGGTAAATCTCACTCGAACAACTTAGTTTTCACAGTGGATCGAAGCACATGCACGCACGCAAG
AAGATGCTTTGACCTTTCGGTAGGGACGCATCGTCGAAAATCCTGAAATAAATCCAGAATAATGCAAGCATCATGACTTA
AACCCTGGTGGGG
>chr6A_532
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---------------------------------------------------AACTGTGGACGGGTTCTGGGCCCGGTCCA
TAAATGCCAGGCCGACGTGATGTGCACACCCAGTCCAGGACACCGT---------TGGA-------TACTCCATAGAATA
GAATACAATATATCAT----TAGCTGTAGTTCACCGGCGCTTTGCTGGCTCGCCGACGGCCATGCAAACACTTCCACATT
AGGCTGGACTGGAGTCTGGAGAGGTTGCGACGTCACCATCGTCCGCCATATGTATGTAGCTGATATCTGCGGCGAGCGAC
AGAAAACAAACCTTTCATCACTCAGATGGCAACGTATATCCACACGTGTAGGCCACACAATCATACTATCGATATAGTTA
AATTAC---TCATAAATTTGAGTAGGTAACAGATATCCTTCACCTAAACTCTACAC-----TATAAAACCGGCTTGAGTC
GT---ACAGGCCGTGCAAGTGA----GCTTGCTAGCAACAGAATTCTTAATCAGGAGAAGAAAAGGAGAGCATCCAGCCA
TGGCAGAGAAGAGGAGCCCCCTGCACCTGCCTCACCACAAGGAGGAGGACAAGGAGGGGGAGGAGAAGCAGCACGGCCAT
GACCACGGTCACGGT------CACGGTCACGACCACAACCATGGCCACGGCCACGACCACAACCACAACCACAGGGAGCA
CGCCGGCGGGAGGGGGCTGGACATCGACATGGACCTACCGG---CGTACGTCAACATGGGCTCCATCACCACCGCGGGCG
TTCTCGTACGCACCGTATTGCACAAACAATTAAGCTTATTGATTCTGACGGTTTGTTTGCGGCACTCACTGGCTAGCTAG
CTTCCTGTACGTGTGTGCAGGACTGGAGGTACCAGAAGGCGACAGGGGAGAAGAGGCCGGACAAGGTGATCGGATTGATC
AGCGCCGAGCAGGCCAAGGAGGCCGAGCGCAGGGAGGCCGAGGAGCGCAAGGCGGAGGAGGAGGAGGGCGGGGCCGCCTG
GGCCAAGAACAAGAACGTCTACCAGTTCT----GATCGCCGCCGCAAGCCCA-----GCCGTGCATCGTGGTAGA-----
TGGTCTGAATGGAAAAAGTTCGCGAGAGATGATCCCTTTTTTCTAGCACGCGTAC--TATATGGTGTACATGTATCCACC
GCTCACCGTCACTTGGAGATCCGTGCTACGTTTTCTTGTTTTGTCGAAAGCTTGTCTTGGCACAGAGTGCTGCGCGATGT
TTCATCGATGTTTTTT------AAAATGTATCGTGATGCTTCGTTGTACTTTTCGAGAGTGTATTTCAGTAAAATAAGAG
AGTACTCA--TCAGATTTGTATGAAAT--TTCAGAGGGTGTGTGCTCTTCGAAGGGATGGCATCTCATCGAG--------
TTTCTATATGTTTTTAACGTCTACTAGTACTTTAACTTGTTAATTTTAGCAAATAAGAAAATTGTCTTTGAAGTTGCAAG
TGTT----------------------------------------------------------------------------
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>chr6D_578
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-----------------TGGTGTGCACACTCAATCCAGCACACCGCCACTCGTGCTGTACAGTCAGTACTCCGTAGAATA
GAATACAATACATCAT----TAGCTGTAGTTCACCGGCGCTTTGCTGGCTCGTCGACGGCCAGGCAAACACTTCCACATT
AGGCTGGGCTGGAGTCTGGAGAGGGCGCGACGTCACCATCGTCGGCGA----TATGTAGCAGATATCTACGGCGAGGGAC
GGAAAACAAACCCTTCATCATTCAGATGGCAACGTATATCCACACGTGTAGGCCACACAATCATACTATCCATATAGTTA
AATTATCATTCATAAATTTGAGTAGGTAACAGATATCCTTCACCTAAACTCCACGACTATATATAAAACCCGCTTGAGTC
AC---ACAGGCCGTGCAAGCAACCGTGCTTGCTAGCAACAGAAATCTTAATCAGAGGAAGAAAAGGAGAGCATTCAGCCA
TGGCAGAGGAGAGGAACCCCCTGCACCTGCCTCACCACAAGGAGGAGGACAAGGAGGGGGAGGAGAAGCAGCATGGCCAC
GACCACGGTCACGGT------CAC------------------GGCCACGGCCACAACCACAATCACAACCAGACGGAGCA
CGCCGCCGGGAGGGGGGTGGACATGGACCTG------CCGG---CGTACGTCAACATGGGCTCATTCACCACCGCGGGCG
TTCTCGTACGCACCGTATCGCGCAAACAATTAAGCTTACTGATTCTGACGGTTTGTTTGCGACACTCACTGACTAGCTAG
CTTCCTGTACGTGTGTGCAGGACTGGAGGTACCAGAAGGCGACAGGGGAGAAGAGGCCGGACAAGGTGATCGGATTGATC
AGCGCGGAGCAGGCCAAGGAGGCCGAGCGCAGGGAGGCCGGGGAGCGCAAGGCGGAGGAGGAGGAGGGCGGGGCCGCCTG
GGCCAAGAACAAGAACGTCTACCAGTTCT----GATCGCCGCCGGGCGCCCA-----GCCGTGCTTCTGGCGGCAGATAG
TGTTCTTGATGGAAAAAGTTTGGGAGAAATGG------TTTTCAACCGTGCGTAC--TATA--GCGTGCATGTATCCACT
GTTCATCATTACTTGGAGATTCGTGCTATGGTTTCTGGTTTTGTCAATGT-TTGTCTTGTTCAAGAGTGTTACATGATGT
TTCATCGATGTTTTTT----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--S--------S--S-----------
------S------S-S----S---------------------SS------SS------------------S---------
-------------S--SSSS--------------------------------------------S----------S----
S------S---------S--------------------------------------------------------------
----------------------------------------------------------------------------S---
---SS----------------------S---S---------------S--------------------------------
--SSS---S-----------------------------------------------------------------------
---------------------------------S----------------------------------------------
------------SSSSSSSSS--------------------------------------SS-------------------
-----------------------------------------SSS-----------------------S------------
------------------------S--S---S-------------------------------S----------------
-----------S--------------------------------------------------------------------
--------------------------------------S-----------------------------------------
-------------S---------------SSSS-----------------SSSSSSS-----------S---------S-
-----------SS--------------SSSS-SSSSS--------------SS--SS-----------------------
---------------------S---------------------------------------S--------------S---
---S-------S----SSSSSS------------S---SS-S-----SSSS-----------------------------
S---SS-SSS-------------S---SS------S---S---------S-----SSSSSSSSSSSSS-S-SSSSSSSSS
-----------------------S-SS----------SS------------S-----------SS-S--S-----S----
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_738
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------------------------------------------------------------------------------TT
CGGCTGGTCTGGAGTCTA--------------------------------------------------------------
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>reverse_2451
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--------------------------------------------------AGTGGATCGAAGCACATGCA----------
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