>input_sequence_79083
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-----------------------------------------------------------ATGGCTCCTGCCGGGACCAGG
GGCGCCCGCGCGGCTGCGCCGGCGGCGGTGCTCCTCGTGGCGGCGCTGCTGGTGGCGCTGGCGCTGGCGCCGCGGGGCAC
GAGCGCGGCGCTGACGTGCTCCACGGTGTACAACGAGCTGATGCCGTGCCTCGGGTACGTGCAGTCGGGCGGGGCGGTGC
CGCGGGCGTGCTGCTCGGGGATCAAGACGCTCGTGTCCAGGGCGCGCGCCACGCCCGACCGCCGCGCCGCCTGCGCCTGC
CTCAAGACCGTGGCCGCCGCCGCGGCGGGCGGGCCGTACCTCGGCCGCGCCGCGGGGCTGCCCGGCAGGTGCGGCGTCCA
GCCGCCCTTCAAGATCGACCCCAACGTCAACTGCAACGCGTACGTGACGCCAAAACCCGAGGCATGAAAGTTTCCGACAC
GTCGTTCTTCGCTTTAACCCGGCTGTTTTTGCGTTGTGCGTGCAGGGTATAA----------------------------
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>chr1A_1_TraesCS1A01G300300
ACTTGACAAGTTTATGAGCCTCAAAATTAAAATTTCTGCGCTCATGAATGAAACTAGAAGACTGAGAACTACTCCTACGA
GCTATGATTTTATGTATGATGGCGGCGTGGTGACCTCCTGACCCATGATTGATGTCATTCACTACTCCTTTACAACCTGA
AGCACAATCAGATTCTAAACATCCAGGTCCTCAGCTAATGACATGGTCCGTTTGCATCAGCGCGTTGAAATTAGCCCCAA
TAAGATCAAACGGCCCAATTGGCTGCAGTTGAAAGTCCTCTGAAAAAAAAAAGCAAAAAACATACAACCAGAGACGCATG
TGGAAATTGTGTTTGTTGTTTCCATCTTTCACTAGTCTTCGGTGCCGGGTTGAGTTGATTAGCCACTTCAGTCCAGTGCT
TCTCTACCTGCCAATTCACGGGAAAGTAAAACTCTTTTGCGAAAATATTTGGACCAAGAGAAGACAGCCCACGTTCATCT
CTCTTTCAGGGAGATGA--TATTTGGCAGCGACCAGCGCATCGCCCAGGTCGCTAGAGCGACCCAGCCTGCCTTGACGCC
AA-------GTCTCCCCGCTGGTCTACGGCCCGCAGTCCACGCACCGCGCATCCGTTG-TGTTCAGATCGAGCGTTCATG
GCATTGTCGCCTTCCCGTCTTCAGTTCTTCCCCTTCTTGCACGGGACATTCAGAAACTCCAACCACTGTCCACACATGTC
ACATGACAATGCATGCATGGCGCGTGTCGAAACCTCCATGCGGCACGTCTGCGT----CGGCACCACACGGCAAAGAGGG
AGCACAACTGTCGCACACCCGCGGGTTCCCGGCACCCACCTCTAGGCCATTGTTCCAGCGACCGCCCTACCTCGTCGGTC
GCCGCCTCTCCCCACATATACTTGCGCTCTCCCTGCCCACCTGAGCCACACCTGCCTGAGACCACAGTTCACCCACCGAT
CACCTGAAGATCCCATAGTACTACTT-----GGCAATCTTTGCTAGGCATTTGGCATCGATGGCTCCTGCCGGGACCAGG
GGCGCCCGCGCGGCTGCGCCGGCGGCGGTGCTCCTCGTGGCGGCGCTGCTGGTGGCGCTGGCGCTGGCGCCGCGGGGCAC
GAGCGCGGCGCTGACGTGCTCCACGGTGTACAACGAGCTGATGCCGTGCCTCGGGTACGTGCAGTCGGGCGGGGCGGTGC
CGCGGGCGTGCTGCTCGGGGATCAAGACGCTCGTGTCCAGGGCGCGCGCCACGCCCGACCGCCGCGCCGCCTGCGCCTGC
CTCAAGACCGTGGCCGCCGCCGCGGCGGGCGGGCCGTACCTCGGCCGCGCCGCGGGGCTGCCCGGCAGGTGCGGCGTCCA
GCCGCCCTTCAAGATCGACCCCAACGTCAACTGCAACGCGTACGTGACGCCAAAACCCGAGGCATGAAAGTTTCCGACAC
GTCGTTCTTCGCTTTAACCCGGCTGTTTTTGCGTTGTGCGTGCAGGGTATAAATTGGGCACGCAGCTCTACAGCGCGCGG
AA----CACGGCCGTGATGCGATGCCACAAGATA-TACCCTTGTGGAACGTTCTACTGTACGTTTGTACGCACCCCTACA
GATG---------------------------------------------------------TACTATACATGAGTCGACG
GCGAATAATAGCGCCATATGT-------TCTCCAATTATGTGGTGTTCTGTAAACCAGTGTGTGATGAGGGAGACATACG
CACTCCCTCCTATGAATAATCGTTGGATTTGTGAGTGTGATCGCCCGATTATCTCAACAGTAATTTTACTTCTACATTGT
TTTACGAGATGCAGCACAGTGTCACTTTGTAGAATTACAATCATGCGGTACGGCTAAATGCCGTGAACAGTAGAGGATGG
TGCACTATGAAAGTATGAAATAAGCGTGCATGGCCAGAGCATAGGCTGGGCAAATTGGGTTAACCAAATTGGATCGA---
-------------------------TGGTTGATTTATAGGTTTCATCGTGAAGCTAATTGTTACTTCGCAATTACTACCC
TCGTCTTGGTTTACAGGTCCCCTTTATAGTTTGTAGTTTGTGTCAATTTTTGACCAAAGATTTAACTAACAAAATGTTAA
TGCATGTTAACAAAAATTATATTGTTGGATTTTGTGACATGCATTAACATTTTGTTAGTTCAATCTATGATCAAAATTTG
ACACAAAATACAATGAGAACCAATAAACCAGGACGGAGGTAGTAACGCTTCATGAGAGGCCGGTGGCTGCATAGGCGACT
AGGAAACCCTAATCACCACCAGTCTTCTTCCCCTCACGGTCGTCGGGCAAAGCCCGCATGGCAGTGATGGTGGCTGGATG
ATTTTGTTAGGGAATGTCCCACTGTGGAGAATTGGGGGGACTGTTGTGAGGTGGCGAAAGTGAAGCGTGTTCGGGTCCTC
GACGATGGTATTGGTGAAGTCGGCGGTGGCCAGTGGGATTTAACGTGGTGATCTTCAACGGAGGCCCGACTTGGGTAGGT
CACCAGAGAAGAGGGCGTCAGCGTATGAG
>chr1D_389
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--------------------------------------------------------------------CAGTCCAGTGCT
TCTCTACCGGCCAATTCACAGCAAAGTTAAACCCTTCCAAAAGAAA--TTGGACCAAGAGAAGACCGCCCGCGTGCCTCT
CACTGTCCAGGAAAACGACTGTCTGCCAGCAACCAACGCATCGTCCAGGTCGCCAGAGCGACCCAGCCCGCCTTGACGCC
AGTCGCCAGGTCTCCT-GCTGGTCTACGGCTCGCGGTCCACGCACCGCACGTCCGTTGTTGTTCAGATCGAGCGTTCGCG
GCATTGTCGCCTTCTCGTCTTCAGTTCTTCCCCTTCTTGCACGGGACCTTCAGAAACTCCAACTGCTGTCCACACTTGTC
ACATGACAATGCATGCATGGCGCGTGTCGAAGCCTCCATGCGGCGCGTACGTCCGCACCGGCAACACACGGCAAAGTGGG
AACACAACTGTCACACACCCGCGGGTTCCCGGCACCCACCTCTAGGCCATTGTTCCAGCGACCGCCCTACCTCGTCGGTC
GTCGCCTCTCCCCACATATACTTGCGCTCTCCCTGCCCACCTGAGCCACACCCGCCTGCGAC--CAGTTCACCCACCGAT
CACCTGAAGATCACATA---CTACTC-----GTCAATCTTTGCTGGGCAGTTGGCATCGATGGCTCCTGCCGGGAACAGG
GGCGCCCGCGCGGTCGCGCCGGCGG------------TGCTGGTGCTGGCGCTGGCGCTGGCGC------CGCGGGGCGC
GAGCGCGGCGCTGACGTGCTCCACGGTGTACAACGAGCTGATGCCGTGCCTCGGGTACGTGCAGTCGGGCGGGGCGGTGC
CGCGGGCGTGCTGCTCGGGGATCAAGACGCTCGTGTCCAGGGCGCGCGCCACGCCCGACCGCCGCGCCGCCTGCGCCTGC
CTCAAGACCGTGGCCGCCGCCGCGGCGGGCGGGCCGTACCTCGGCCGCGCCGCGGGGCTGCCCGGCAGGTGCGGCGTCCA
GCCGCCCTTCAAGATCGACCCCAACGTCAACTGCAACGCGTACGTGACGCCAAAACCCGAGGCATGAAAGTTTCCGAGA-
--CGTTCTTCGTTTTAACCCGGCTGTTTCTGTGTTGTGCATGCAGGGTATAAATTGAGCACGCAGCTCTACAGCGTGCGG
AACATGCACGGTCGTTATGCGATGCCACAAGATA-TACCATTGTGGAACGTTCTACTGTACGTACGTACGTACCCTGCAG
ATGTACTACCTCTGTACAAGTACAAGTTCTCCCAACTATAAGTATTTTGGTACAGAGGGACTACTATACATGAGTCGACG
GCGGATAATCGCGCCATATGTCCTT-------CCATTATGTGGTGTTGTGTAAACCAGTGTGTGATGAGGGAGTTA----
-----CCTCCTAGGAATAATCGTTGGATTTGGGACTGTGATCAACAGATTATCTCAGCAGCAATTTTACTTCTTCATTGT
TTTACGAGATGCAGCACAGTGTCACTGTGTAGAATTACAATCATGCGGTACGGCTCAATGCCGTGAACAGCAGAGGATGC
TGCAC--------TATGAAATAAGCGTGCATGACCAGAGCACAGCCTGGGCAAATTGGGTTCACCAAATTGGATCGATGG
TTAGTATAACTTTTTTTTGGATCGATGGTTGATTTATAGGTTTCATCGTGAAGCAAATTGTTACT---------------
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>chr1B_502
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-----------------------TGGCAGCAACTAACGCATAATCCAGGTCCCTAGTGCGACCCAGCCTGCCTTGACGCC
AG-------GTCTCCT-GCTGGTCTACGGCTCGCAGTCCACGCACCGCACATCCGTTG-TGTTCAGATCGAGCGTTCGCG
GCATTGTTGCCTTCTCGTCTTTAGCTCTCCCCCTTCTTCCACGGGACCTTCAGAAGCTCCAACTGCTGTCCACACTTGTC
ACATGACAATGCATGCATGGCGCGTGTCGAACCCCCCATGCGGCACGT----CCGCACCGGCAACACACGGCAAAGTGGG
AACACAACTGTCACACACCCGCGGGTTCCCGGCACCCACCTCTAGGCCATTGTCCCAGCGACCGCCCTACCTCGTCGGTC
GTCGCCTCTCCCCACATATACTTGCGCTCTCCTTGCCCACCAGAGCCACACCTGTCTGAGACCACAGTTCACCCACCAAA
CACCTGAAGATCACATA---CTACTCTACTTGTCAATCTTTGCCAGGCAGTTGGCATCGATGGCTCCTGCCTGGACCAGG
GGCGCCCGCGCGGTCGCGCCGGCC---GTGCTCCTCGTGGCGGCGCTGCTGGTGGCGCTGGCGC------CGCGGGGCGC
GAGCGCGGCGCTGTCGTGCTCCACGGTCTACAACGAGCTGATGCCGTGCCTCGGGTACGTGCAGTCGGGCGGGGCGGTGC
GGCGGGCGTGCTGCTCGGGGATCAAGACGCTCGTGTCCAGGGCGCGCGCCAGGCCCGACCGCCGCGCCGCCTGCGCCTGC
CTCAAGACCGTGGCCGCCGCCGCGGCCGGCGGGCCCTACCTCGGCCGCGCCGCGGGGTTGCCCGGCAGGTGCGGCGTCCA
GCCGCCCTTCAAGATCGACCCCAACGTCAACTGCAACGCGTACGTGACACCAAAACAAAAGGCATAAAAGTTCCCGAGA-
--CGTTCTTCGTTTTAACCCGGCTGTTTTTGTGTTGTGGATGCAGGGTATAAATTGGGCACGCAGCTCTACAGCGCGCGA
AA----CGCGGCCGTGATGCGATGCCACAAGATACTCCCATTATGAAATGTTCTGCTGTACGTACGTACCCTG-----CA
GATG---------------------------------------------------------TACTATACATGAGTCGACG
GCGAATGATCGCGCCATATGTTCTGAACTCTCCCATTATGTAGTGTTGTGTAAACCAGTGTGTGATGAGGGAGACATACG
TACTCCCTCC-ATGAATAATCGTTGGATTTGTGACTATGATCAACAGATTATCTCAACGGCAGTTTTACTTCTACATTGT
TTAACGAGATGCAGCACAGAGTCACTGTGTAGGATAACAATCATGTGGTACG----------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
--------S----------S-S-----S----S---SSSSS-S--SSS-----------------S----S---S-S---
-S--S--SS---S-SSS---S-S-------S----S-------S------------------------------------
-S-------------SS-------------S-----------------S----------------------------SS-
--------------S--------------------------------S---------------SS----------S----
-------------------------------S----------------SS-SSS---------S------------S---
-S----------S-------------------------------------------------------------------
-S------------------------------------------------------------------------------
------------S----SSS-----S------S----------------S------------------------------
-------------SS----------SS-------------------------------------SSSSSS--------S-
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-----------------------------------------------------------------------------S-S
SS---------S-------------------S-------S----------------------------------------
---------------------------------------S-----------------------SS----------SSS--
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---------S-----------------------S-------------S--------------------------------
S---------------------------------S-------SS-S--------------S-------------------
--------------------------S----------------------------S--------------S--------S
-----SSSSSSSS-------------------S--------S--S----------------S------------------
------------------------------------------------------S----------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_230
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--------------------------------------------------TTTGCATCAGCGCGTTGAAA----------
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>reverse_2270
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-----------------------------AGGACGGAGGTAGTAACGCT-------------------------------
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