>input_sequence_79077
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------ATGAGGCTCTATATTGTTTTGTATGTGCAAGCCATAT
TAAAAGTTTGTTATGCTTTTCTAGGAGACTATTACCAGGACACCAAATGTCAAAATTTAAATGGACAGCAGGCAGACTAT
AAATCAGTTGTAAAGGTAACTAAAAATTCTAGGAATGGGAACAGCTCTCGTGTTGTACATTCCGATGGATAATCGGAAAA
TGAGGGTAGTATGGAGAAAGATGAATCCATATTCAAGGAATCAAGAGTTGAGAGAAAGTATATAATAGCTCACAGATGTG
GCGGCATTCGTAGAATACCAGAAAACATTATTGAGATTAACCATATAAGCTTTTGTGGTGTATTTGCATGTTCTTTCATA
GTTTTGCATGTC-----TAATTGTTAAAAATGATTTTGCAGGGGCAAGTGCAAAACTTATTTGTTCTGAAAACTATAAAG
CAAGAGCCGGAGGATGATGAACTCCACCTCCATACCACCTAA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>chr7D_1_TraesCS7D01G198800
TGTCTCATCTCAATATCTCTTGCCTTGAAGCTTTATCTATGTGAGCTACCGGATGACCTATTCTATTGCGTAGTGGCGAT
TGCTACGCGTTTGGGCTGGCGTAGTCTCATGGCCCTCATTACAGGATGTGTGGTATCCTAGAAGCAGCTTCAATCGCAGA
GAATGGGATGCATGCACGTG--GGCAGTTTTTCGACACCTCATGCAAATAAATTCAGAGCACAACCATGCCCATCAGGTG
AGCTTACACAAATTAAACATCATGTTGGTTCACAACATCGTCGACCATGACCATCTGGCGAGGTTATACAAATTAGACAC
CATGTTGGTTCACAACATCGTAGATGGTTCGCTGATCTAACTAGGTGCCAATGTTTTCTTTGGTCTGTTGTTGTCACTGT
GCATGTTAGGGAATCATCTTTTGTGTTCTTTTGCAGGTTCAATTTTTTTGTAATCCTTTAATTTGTTATATCAAGTTCAA
CTATTTTTCTTGGCAATTTAATGTTTAAAGCAATTGCGCGTGATATGATGGTCAGATTAATTAAGATGTGGGATACCATT
AACGTTAACAGTGAACTTACTTGATGAAGAGGTCAGTTTTCTGATTTGCCAACATAAACATTATACAATCAGTTATAATA
GTTATTACAAAAATACTAGGACATCTTCTCCCAAAATTATTATTGTTTCAGGGCATGATACATGAGAAGGTAATGTAACA
TATGGTTATCAAGTCCAGTCGCTGATCCAAGAAGGTTCAGTCTAAGTTTACATCTTCGCCGTATTTCCATCAAATTGGAG
GTGAGAAGACACCTTATTTCTTGCACACTAATCCAAAAAAACTATTGGAAGAGATTGAATTTTTAGTTTAGACTGAATGA
ATATAATCTCAATTCTCAAGTACATTTACCAATATTACACTATTTATGCA-AAAAATCGCAGATTTTGAAGAAGACACGT
CATTAAAGCATACAAATGTCGAACAAGTTCTGTTATTTCCACCATGAGGCTCTATATTGTTTTGTATGTGCAAGCCATAT
TAAAAGTTTGTTATGCTTTTCTAGGAGACTATTACCAGGACACCAAATGTCAAAATTTAAATGGACAGCAGGCAGACTAT
AAATCAGTTGTAAAGGTAACTAAAAATTCTAGGAATGGGAACAGCTCTCGTGTTGTACATTCCGATGGATAATCGGAAAA
TGAGGGTAGTATGGAGAAAGATGAATCCATATTCAAGGAATCAAGAGTTGAGAGAAAGTATATAATAGCTCACAGATGTG
GCGGCATTCGTAGAATACCAGAAAACATTATTGAGATTAACCATATAAGCTTTTGTGGTGTATTTGCATGTTCTTTCATA
GTTTTGCATGTC-----TAATTGTTAAAAATGATTTTGCAGGGGCAAGTGCAAAACTTATTTGTTCTGAAAACTATAAAG
CAAGAGCCGGAGGATGATGAACTCCACCTCCATACCACCTAAAAGGATTAGGGGAAGGAGCACAAGTCGTGTCACATCTA
GAAGAGGAATAAAAAAAGGAAGGTACTCAGGTGTTGATATAAAATCACCGAAATAAGA------TATAGAATGTCCAGTG
TGTCCTGGACTCGAAAATTAGTTATAATTGGAACAGGTACAAGCATTCTTATCTAACAAAATGTAATATGGTCCAGATAT
AGCACCTTTTTTTAAATTGTTCCACCATCCATGCGTCACAGTTTCTCCCTCTCTACCCTGCTTGCATCTCTCAGTTCCCC
TCTGCAAAATTTTATTTGTGAGCATGGTAGTTCTCTATGCATCTACATCTGAACATCTACCTTTTTTGCCACTGATGTAA
ACATCTACCATTGTGCAGCTAATTTTTTTAGCAAGGGGTAACAACTGATTTCAAACAATCAAGATGAGTTATGTTTGCAT
CACGGTTATGAATTTGAGACTCGGTGAAGCTAAAGAACTATAGACGAAACAAGAACATTTTGTCAGTACCTATAACTTTC
TTTTCTTAGACGGACCCTGAAATTCACATGCAGATTTAAAAAA---ATGGAAACTAGGCAATGTGATTCATATGCCCACA
GTACAACAATAACCATTTTACATGTTGTATCTGCCTAGCACTGACCTTCCTCTGCTATAATCTCTCCAGGATGCAATGTT
GAATCACCTAAAAAATGAAAGGAGGTTTGGGATAACGTAGAGAGCGTTGTTTGACATCTCAAATTTTATTTCATAGAGAG
AGGAGATTGG-AAAAAATTTGACAGGACATCTGCGCCAAATGATACTACCGAGACCGCCGACGATCCTCGGGAAAACCTG
TTACTGATCTAAAAAGACACACAAATTAGTAGTACCTGTGGTGTGTCTCCATACCAAAAGTACAATTATTACAGATATAT
ACTTTTTTAATATAAAAAACTGTAATAAATTATATGGGGACTAATTTGAGTTAACCATCGGAAAATGTGCAATGAAGATC
GGGATAATTATT
>chr2A_1
TGTCTCATCTCAATATCTCTTGCCTTGAAGCTTTGTCTGTGTGAGCTACCGGATGACCTATTCTATTGCGTAGTGGCGAT
TGCTATGCGTTTGGGCTCGCGTAGCCTCATGGCCCTCATTATAGGATGTGTGGTATCCTAGAAGCAGCTTCAATCGCTGA
GAATGGGATGCATGCACGTGTGGGCAGTTTTTCGACACCTCATGCAAATAAATTCAGAGCACAACCATGTTCATCAGGTG
AGCTTACACAAATTAAACATCATGTTGGTTCACAACATCGTCGACCATGACCATCTGGCGAGGTTATACAAATTAGACAC
CATGTTGGTTCACAACATCGTAGATGGTTCGCTTCTCTAACTAGGTGCCAATGTTTTCTTTGGTCCGTTGTTATCACTGT
GCATGTTAGGGAATCATCTTTTGTGTTCTTTCGCAGATTCAATTTTT-TGTAATCCTTTAATTTGTTATATCAAGTTCAA
CTATTTTTCTTGGCAATTTAATGTTTAAAGAAATTGCGTGTGATATGAAGGCCAGATTAATTAAGATGTGGGATGCCATT
AACGTTAACAGTGAACTTACTTGATGAAGAGGTCAGTTTTATGATGTGCCAACATAAACATTATACAATCAGTTATGGTA
GTTATTACAAATACTGA--GACATCTTCTCCCTAAATTATTATTGTTTCAGGGCATGATGCATGAGAAGGTAATGTAACA
TATTGTTATCAAGTTCAGTCGCTGATCCAAGAAGGTTCAGTCTAAGTTTATATCTTCGCCGTATTTCCATCAAATTGGAG
GTGAGAAGACACCTTATTTCTTGCACACTAATCCAAAAAAACTATTGGCGGAGATTGAATTTTCAGTTTAGACTGAATGA
ATATAATCTCAATTCTCAAGTACATTTACCAATATTACACTATTTATGCAAAAAAATCACAGATTTTGAAGAAGACACGT
CATTAAAGCATACAAATGTCGAACAGGTTCTGTTATTTCGACCATGAGGCTCTATATTGTTTTGTATGTGCAAGCCATAT
TAAAAGTTTGTTATGCTTTTCTAGGAGACTATTACCAGGACACCAAATGTCAAAATTTGAATGGACAGCAGGCAGACTAT
AAATCAGTTGTAAAGGTAACTAAAAATTCTAGGAATAGGAACAGCTGTCGTGTTGTACATTCCGATGGATAATCAGAAAA
TGAGGGTAGTATGGAGAAATATGAATCCATATTCAAGGAATTAAGAGTTGAGAGAAAGTATATAATAGCTCACAGATGTG
GTGGCATTCGTAGAATACCAGAAAACATTATTGAGATTAACCATATAAGCTTTTGTGGTGTATTTGCATGTTCTTTCATA
GTTTTTCACGTCTCTAATAATTGCTAAAAATGATTTTGCAGGGGCAAGTGCAAAACTTATTTGTTCTAAAAAATATAAAG
CAAGAGCCGGAGGATGATGAACTCCACCTCCATACTACCTAAAAGGATTAGGGGAAGGAGCACAAGTCGTGTCACATGTA
GAAGAGGAATAAAAAAAGGAAGGTACTCAGGTGTTGATATAAAATCACCGA------A------TATAGAATGTCCAGTG
TGTCCTGGACTCGAAAATTAGTTATAATTTGAACAGGTACAAGCATTCTTATCTGACAAAATGTAATATGGTCCAGATAT
AGCACCTTTTTA-AAATTGTTCCACCATCCATGTGTCACAGTTTCTCACTCTCTACCCTGCTTGCATCTCTCAGTTCCCC
TCGGCAAAATTTTATTTGTGAGCATGGTAGTTCTCTATGCATCTACATCTGAACATCTACCTTTTTTGCCACTGATGTAA
ACATCTACCATTGTGCAGCTAATTTTTTTAGCAAGGGCTAACAACTGATTTCAGACAATCAAGATGAGTTATGTATGCAT
CACGGTTATGAATTT--GACTCGGTGAAGCTAAAGAACTATAGACGAAACAAGAACATTTTGTCAGTACCTATAACTTTC
TTTTCTTAGATGGACCCTGAAATTCACATGCAGATTAAAAAAATAAATGGAAACTAGCCAATGTGATTCATATGTCCACA
GTACAACAATAACCATTTTAGGTGTTGTATCTGCCTGGCACTGACCTTCCTCTGCTATAATCTCTCCAGGATGCAATGTT
GAATCACCTAAAAAATGAAAGGAGGTTTGGGATAATGTAGAGAGCGTTGTTTGACATCTCAAATTTTATTTCATAGAGAG
AGGAGATTGG-AAAAAAATTGACAGGACATCTGCGCCAAACGCTACTACCGAGACCGCCGACGATCCTCGGGAAAACCTG
TTACTGATCTAAAAAGACACACATATCAGTAGTAGCTGTGGTGTGTCTCCATACCAAAAGTACAATTATTACAGATATAT
ACTTTTTTAATATAAAAAACTGTAATAAATTATATGGGGACTAATTTGAGTTAACCATCGAAAAATGTGCAATGAAGATC
GGGATAATTCTT
>chrUn_1506
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------ACATCTA
GAAGAGGAATAAAAAAAGGAAGGTCCTCAGGTGTTGATATAAAATCACCGA------ACTAAGATATAGAATGTCCAGTG
TGCCCTGGACTCAAAAACTATTTATAATTTGAACAAGTACACACATTCTTATCTGA-AAAATGCAATATGGTACAAATAC
AGCACCTTTTTT-AA-TTGCTCCACCATCCATGTGTCACAGTTTCTCACTCTCTACCATGCTTGCATCTCTCAGTTCCCC
TTTGCAAAATTTTATTTGTGAGCA-GGTAGTTCTCTATGCATCTACATCTGAACATCTACC-------------------
---------ATTGTGGGGCTAATTTTTTTAGCAAGGGG-AACAACTGATTTCAGACAATCAAGATGAGTTATGTATGCAT
CACGGTTATGAATTTGAGACTCGGTGAAGCTAAAGAAC------------------ATTTTGACAATACCTATAACTTTC
TTTTCTTAGATGGATCTCCAAATTCACATGCAGATTAAAAAA-TAAATGGAAACTAGGCAATATGATTCATATGCCCACA
GTACAACAATAACCATTTTACGTGTTGTATCTGCCTGGCACCGACCTTCCTCTGCTATAATCTCTTCCGGATGCAATGTT
GAATCATCTAAAAAATTAAAGGAGGTTTGGGATAACATAGAGAGCGTAGTTTGACATCTCAAATTTTATTTCATAGAGAT
AGGAGATTGGAAAAAAAATTGACAGGACATCTGCGCCAAACGCTACTACCCAGACCACCGATGATCCTCGGGAAAACCTA
TTACTGATTTAAAAAGACACACATATCAATAGTATCTGTGGTGTGTCTCCATACCAAAAGTACAATTATTAAAGATATAT
AATTTTTCATAT--AAAAACTGTAATAAATTATATGGGGATTAATTTGAGTTAACGATCAAAAAATGTGCAATGAAGATT
AGGATAATTCTT
>SNPs
----------------------------------S---S-----------------------------------------
-----S-----------S------S----------------S-----------------------------------S--
---------------------------------------------------------------------SS---------
--------------------------------------------------------------------------------
---------------------------------SS------------------------------S------S-------
-------------------------------S----S----------S--------------------------------
------------------------------S-------S---------S--S----------------------S-----
----------------------------------------S----S------------------------------SS--
-----------S-SSSSSS-------------S--------------------------S--------------------
---S----------S-----------------------------------S-----------------------------
------------------------------------------------SS-------------S----------------
----------------------------------------------------------S---------------------
-------------------------S-------------S----------------------------------------
----------------------------------------------------------S---------------------
------------------------------------S---------S---------------------------S-----
-------------------S---------------------S--------------------------------------
-S------------------------------------------------------------------------------
-----S--S--------------S-------------------------------------------S----S-------
-----------------------------------S--------------------------------------------
---------------------------------------------------SSSSSS-----------------------
-----------------------------S------------------------S-------------------------
------------S--------------------S-------------S--------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------S-----
--------------------------------------------------------------------------------
----------S-------------------------S-------------------------------------------
---------------------S--------------S-------------------------------------------
--------------------------------------------------------------------------------
-----------------S----------------------S-S-------------------------------------
-----------------------S--S-------S---------------------------------------------
------------------------------------------------------------S-------------------
---------S--
>forward_355
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------ACATCGTAGATGGTTCGCTGA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_1157
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGGAACAGCTCTCGTGTTGT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>forward_532
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------ATTGCGCGTGATATGATGGT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
>reverse_2117
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AGCACTGACCTTCCTCTGCT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------
