>input_sequence_79072
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--------------ATGGGTGCCCAGGAGATCAAGTACTTGTACTTCTCGCAGGCGAAGCTTGGCCGCCGGTGGCGGCGG
CCGGTGAGGGGGTTCCGGCTCAGCCCGACCCGCCTCTCCGTCCGCCGGCTACGCGCCAGGCTGTGGACCATGCTCGGCCT
GCTGGGCCGCTACTTCCGCGGCGTGCGGCTGCCGCAGCTTACCAGGGGGCTCGTCGCCAGCAGCAGCTCTCCCGCGTCAA
CGAGCGGCGGCGGC---AACAAGAAAGGGCAGCCGCCGGCAGTGTCACAATCACAGGCGGCCGGTAGCAACGGCGCCAAG
CCGCGGAGGCCGCCGTGCATGCGGTCAAACTCCTTCTACGCGCGCGCCGTCGCGGACTGCCTCGACTTCATCAAGGGCAG
CAACGCCGCCCCGGTCGAGGACAACCGCGGCGCCGCTGCCGGTGCCGTCCGGCACGGCTATGG---GCAGCATCAGGTGG
TGAAGGCCACGTGA------------------------------------------------------------------
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>chr7A_1_TraesCS7A01G225200
ACTGTGGACTATACTATACTGTTATATCATTAGCCGTTTTCTTGTCTTCAACAAAGCAAACCAATTTCCACCCCCTGTTC
CTCACTTTCTCTGTATGCCAAATGAGGAGAGGTTGATAGGTACCTGG---------------------------------
-------------ATGCTTTTTGTTTGTGCTGGCTTAAACCCTATTAGCCAACAGGCTTGAAATCTCAACCTTTTCAAGC
TTGGATTCCAAACTTTTATCTTCGGTAACCGGGGTGTTTCTGTCCACAGCATGAATACAACAAATCCATTCCTGTTTCTA
AGGTCGAAT-----------------------------------------------------------------------
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----------------------------------------------------GCCGTAGGGTTGCCTGACAAAAATCCTT
GAG-----------------------------------------------------------------------------
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-------------------------TAAATATAAGTTATTCTTGACTTGGATTTACGACGCA---------AACCCTCAC
CGAACCCAACAACCAGGTGGTGTTCAACTTCTTCAACCCAGCTGCTGTCGTTTTGATCTGACCACATCTTCAGCTGGTGA
ACTCGAAGTGGAATCTACAGACATTGCAA-------CGCACGCGCGCACCAAAGAGCCTCCACCGCA-------CGCAGA
GCGTCCAAGGAAACCAGTTACGCGGAAACGGAAGGCGCGCGCCTTTCACATTCTACACGATCACCTACTTCCTTTCGGAA
AGAAGATTTTAAAATTATGTACGACTCTACAGCACGAACAAACCCATCGATCATTAGGGCGCACTGGCCTGGCCTGTACA
TGCTTTTCTCCTTTGTCCACCATGCATTAGTTAAGCAACAATTAATCAATCCCGCCATGTCCCCAAATCTGGCGCCACAC
TCCACTGCTGGCTCGCGCTCGTCAAAGCCCCCCCACCAACCTTCCTGCCGTCTTCCTCCCCCTGCCCGGCCCCTCCCCCT
ATATATCGCCGTTTCCGGTCGCCACTTGACCTCCAACCAACGGAGCTGAGCTAGCCCCCAGCTCACAAGTACTACGTACG
TGTATACGTGTTGATCGGCGCGAAGTTAGCGTATACAAGTGGCGAGTGGTAGCTAGAGGCAAGAGAGAGGGAAGCTAGAG
CAGTGGTCGTGGCCATGGGTGCCCAGGAGATCAAGTACTTGTACTTCTCGCAGGCGAAGCTTGGCCGCCGGTGGCGGCGG
CCGGTGAGGGGGTTCCGGCTCAGCCCGACCCGCCTCTCCGTCCGCCGGCTACGCGCCAGGCTGTGGACCATGCTCGGCCT
GCTGGGCCGCTACTTCCGCGGCGTGCGGCTGCCGCAGCTTACCAGGGGGCTCGTCGCCAGCAGCAGCTCTCCCGCGTCAA
CGAGCGGCGGCGGC---AACAAGAAAGGGCAGCCGCCGGCAGTGTCACAATCACAGGCGGCCGGTAGCAACGGCGCCAAG
CCGCGGAGGCCGCCGTGCATGCGGTCAAACTCCTTCTACGCGCGCGCCGTCGCGGACTGCCTCGACTTCATCAAGGGCAG
CAACGCCGCCCCGGTCGAGGACAACCGCGGCGCCGCTGCCGGTGCCGTCCGGCACGGCTATGG---GCAGCATCAGGTGG
TGAAGGCCACGTGAAGATCCACCCGTTGTGTACTGTAAGAGTGTAAATACGACGCGGCGCCTCATCGTTTCTCGCGTGGG
ATTTGATGGTTTTGTGAACTTGTTAGTTTCCGGCATGGTTCTTGGTGGTCGATCTGGATG-----------TCCTTCCTT
TTGTATGTTCTAGCAA----GTACGTA-GTAGATTGTTTAGGGGTTAGCTGGTGCAAGGAAAAGATGGCGGATTGATTGA
CCGGCACAGCATGCACGTGCCACTTAATCTATCTTATGTTTTCTTTTAGTTGAGTCGAATCTATCTTCTGTTGAAAGCTG
GCGTATTAAAATGATGGCCGATGAGACTGTCATAATGAGAGTAATTTAGCTAGTAACATGTCCCAAATATCTCAAGACAA
ATTTGTTTACGTGGCAAGTGTTAATAAGAAGAGAGTTGTGTATGGTGACATAAACATGTTACCATAACATATTTAGTAAA
CTAGGCAGTTTCGATGAGGTGCATAAATG------------AAAAAAAAGGACTGAGTATCCTACTATCATTGTATCGTA
TCATAATAAATACTACAATACTACTCATTACAAAGATAGTATTATACATTAATAGCATATGCATAATATTAACTAGTGA-
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-----------------------------------------------------------TACTATCCATTATAGACAGTT
TACTAGTCTAAGTTACCTTCCACACCAGTTCAAGAGTTCTGTGTGTGAGAATATTTTTGCCTCTGCCAGACACATGCCAG
GGCACTGCATGTAGTGGCAGTTCACGCCCGACGTTTCCAGAAAATAGAACAAATAGCACCGGCGTGGCTAGCTAATACTC
CCTTCATTCGAAAATACTTGTCATCAAAATGGACAAAAATGAATGTATTTAGAATTAAAATACATCTAGATACATCCCCT
TTTATTTATTTTGATGACAAGTATTTTCGGACGGAGGAAGTATCTATCATAGACGAACATAGACGAACAGTATAATCTAG
CGTCATCAGTTGATAAGTACGCTACATCTCACACTTGTTTTTGCTTGTCGTTCTTAATTAAT
>chr7B_31
------------------------------TAGCCGTTTTATTGTCTCCAACAAAGCAAACCAATTTCCACCCCCTGTTC
CTCGC-TTCTCTGTGTGCCAAGCGAGGAGGGGTTGATAGATAGATACCTGGTTACTAATGGAATCGATCTGTTTCTGCGA
GTGAATGAACAAAATGCCTTTTGTTTCTGCTGGCTTAAACCCTACTAGCCAACAGGCTTGAAATCTTAACTTTTTACAAA
CTTAGCCGAT--------------------------------------GCATGAATAGAACGGATCCGTTCCTACTTCTA
ATGGCGTCTCTAACGCCGATCTGTAAACCTCCCGTAACCGTCCGAATCTCGTTGTCCAAACCGTGGAAGTCATTCAACGT
CGACCTGTATCGGTCCATGGGACGGTATGGACGTGATTTCTCCCACAAACTGAAAAAAAAGTGAGGAGTTTTGCGGGAAT
CCAAACCGATCCCAGGGCCGCTTCTGACCGCTCTGGCCCACCAAAAACCCCTTCCCCCTTTCGCGCTCATCCTATCCGGC
GCCAGCTGCCAACATTCATGCCGCTGTAGAACGCGCCACTCCGCATTGAAGGCGGCTTAGGACGGACGCGACCTCTCACT
GCCTCTACCATTGAAGCGGCTCGCCAGCCGAGGGCGCCGCCCGTTGCACGCCTGGCTAAACACGCCTCTCGCCGCATTCA
TATGTCTCCATTAATCCCGCAAGAAAGCCGAGAAATCTACGTCGGCCACACGTCCGTCCATGAGCAGGCCGACATTAAAC
GCAATGCCGGCCGAGCTCCACCCGCCCGCCCTCTATTTAAACGAGGCCGGACGCCGGGCAAGAATCGCACCCCACCGCCC
CCCTATCTCCTCCTTAACCATTTTCACCATTCTTCCGATGGATTTCGAAGAGCATATGCCTCCGCATACAAGACGGCTGG
GTGGCCAGCCGAGCCAACCGGATACAAGCGAGGTAGCTCGCTGCTCCACCTCCACCGCCTAGCCCGTCGGAGCCAGTTGC
CGCCCCAAGCCAGCGTGTGGTTCAGCAACTCGCCGCTCGAGGCCAGCTCGATGAAGAGTGACCAGTTGCTCCACGCCGGC
ACAACGAGGAGCATGGCGTCACGGGCGTCGCTGCATCCACTGCCTGCAACCGTGCCATCCGCCGTCGACGCGCACGTAGC
CGCGCCATGCACGCAGAGAAAGAATCCGAGTGCGCGGATGTCGACAAGGTGGCGGCTAGCACGTTCGCGTGCACCACCAT
CATCGAGGAGAAGTAGAACACGGGAGGCCACCGCCGCTTGTATCCCATGGAGGCCGCCGCCGGTGCCCTAGTCGGTTCTC
CTTTATCTCAGACCATCCTGGGCACCCGCCTGAGCTCCACGGAAGCACCTTTCGCCCTCGGCTGAAGCACCCTCTTTGCC
GCTCCGATGAGCGGCACAACCCGACATAGGGAAGATACGGGGAAAGAATATGCCTCCGGGGCTCCCGACAGTCCGGTTAG
CGGGCTGCCGGACATGGGAAGACAAAGGTATCAGCCGCTATCGGCCATAGACTAGTGTAGTGTATCCGTGTCGTGGGAGT
GGAGCTCCGCGCGACTGTACGTGCACATAGTTTTAGCTTTTTAGTTGAAAATATGTCAAAATGTAACTGTTTTCGCCCGG
TTTATATGAAATCCGTCATGTTTGTACGAAATCCGGCCATGTTTGCATGAATTTTATCCGGTTTGTTGAAAAAGAGTTTG
AAGTGCATGCGGCTAGCATTGAATGTCGACATCCCGCATCCAGGTCTGCAGACTCCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGTGAAAAAAATTGCGGGTTGCAATTGGAGATGCCCTAAGGCCGGCGCCGCGGGGTTGCCTAACAAAATTCTTC
ATTAAAGACGCAGAAGGAGGACGGTCGTTTTGATGAATTTGGTCAATTTGATAAAATTTATGATGATTCGGTTTGTCGGG
TCCGACGTGACGGACACGCCGCCTCCTTATATCCGCATCAGATATAAGCTCGATATATATGAGGAGTGCCAGTTAACCCA
TTCAGGAGCCCAACTTGAAATGCTATAAACATAAGGTACTCGTGTCTTGGGTTTACGACGCAACATTAGTCAACCTTCAC
CCAACCCAACAACCTTACCTAGTGGTGTTTAGT----CCAGCTGCTGTCGTTTCGATCTGACCACATCTTCAGCCAGTGA
ACTCGAAGTGGAATCTACAGACATTGCAA-------CGCACGCGCGCACCAAAGAGCCCGC-------CTCCACCGCAGA
GCGTCCAAGGAAACCAGTTACGCGGAAACGGAAGGCGCGCGCCTTTCACATTCTACACGATCACCTACTTCCTTTCGGAA
AGAGGATTATAAAACTCTGTCCTCTA------CACGAACAAACCCATCGATCATTAGGGCGCACTGGCTTGGCCTGTACA
TGCTTTTCTCCTTTGTCCACCACGCATTAGTTAAGCAACAATTAATCAATCCCGCCATGTCCCCAAATCTGCCGCCACAC
TCCATTGCTGGCTCGCGCTCGTCAAAGCCCACCCACCTACCTTCCTGCCGTCTTCCTCCCCCTGCCC---CCCTCCCCCT
ACATATCGCCGTTTCCGGTCGCCACTTGACCTCCAACCAACGGAGCTGAGCTAGCTCACAGCTCACGAGTACTACGTACA
TGTATACGTGTTGATCGGGGCGAAGTTAGCGTATACAAGTGGCGAGCGGTACCTAGAGGCAGGGGAGAGGGAAGCTAGAG
CAGTGGTCGTGGCCATGGGTGCCCAGGAGATCAAGTAC------TTCTCGCAGGCGAAGCTTGGCCGGCGGTGGCGGCGG
CCGGCGAGGGGGTTCCGGCTCAGCCCGACCCGCCTCTCCGTCCGCCGGCTACGCGCCAGGCTGTGGACCATGCTCGGCCT
GCTGGGCCGCTACTTTCGCGGCGTACGCCTGCCGCAGCTTACCAGGGGGCTCGTCGCCAGCAGCAGCTCTCCCGCGTCAA
CGAGCGGCGGCGGCGGCAACAAGAAAGGGCAGCCGCCAGCAGCG------TCACCGGCGGCCGGTGGCAACGTTGCCAAG
CCGCGGAGGCCGCCGTGCATGCGGTCGAATTCCTTCTACGCGCGCGCCGTTGCGGACTGCCTCGACTTTATCAAGGGCAG
CAACGCCGCCCCGGTCGAGGACAACCGCGGCGCCGCTGCCGGTGCCGTCCGGCACGGCCATGGCCAGCAGCATCACGTGC
TGAAGGCCACGTGAAGCTCCACCCGTTGTGTACTGTAAAAGTGTAAATACGACGCGGCGCCGCATCGTTTCTCGCGTGGG
ATTTGATGGTTTTGTGAACTTGTTAGTTTCCGGCATGGTTCTTGGTGGTCGATCTGGATGCTCCTCTTTTCTCCTTGCTT
TTCTATGTTCTAGCAA----GTACGTACGTAGATTGTTTAGGG-TTAGCTGGTGCAAGAAAAAGATGGTGGATTGATTGA
TCGGCACAACATGCACGTGCCACTTGATCTATCTTCTGTTTTCTTTTAGTTGAGTTGAATCTATCTTCTGTTGAAAGCTG
GCGTATTACAATGATGGCCGATGAGACTGCCATAATGAGAGTAATTTAGCTACTAAT---------ATATCCGAAGACAA
GTTTGTCTACGTGACAAGTGTTAATGAGAAGAGAGTTGTGTGTGGTAATGTAAATATGTTATCGTAACATGATTAGTAGA
TTAGGCAATTTCAATGAGGTGCATGCCATATAACTAAACGAAGAAAAATGGGTTGAGTATTCTATCATTGTACCA---TA
TCCTAATAAATACTACACTAATACTCATTACAGAGATACACTAATAACATATACTTCCTCCGTCCCAAAATTCTTGTCTT
ACATTTATGTAGATATGGATGTATATTATCTAGATATGAATGTATCAAGTCTTTTAGTGTTAGATACATCCGTATCTTAA
ACAATCTAAGACAGAAAATTTGGGACGGAGGGAGTACATGATAATAACTTGTACTCCCTCCGTTCCCAAATATTTATCTT
TCTAGAGATTTCAAATGGATTACAACATACAGATGTATATAGATATATTTTGAAGTGTAGATTTATTCCTTTTGCTTCTT
ATGCAGTAACTTGTTGAAATCTTTAAAAAGACAAATATTTGAGAACGGAGAAAGTATGGTACTATCCATTATAGACAGCC
TATTAGTCTAAGTTACCTTCCACACCAGTCTGAGAGTTCTGCGCGTTAGAATATTTTTGTCTGTACCAGACACATGCCAG
GGCACTGCATGTAGTGGCTGTTCACGCCCAACGTTTCCAGGAAACAGAACAAATAGCACCGGCGTGGCTAGCTAATACCT
ATCAC---------------------------------------------------------------------------
------------------------------------------------------------AGACGAACAGTATAATCTCG
CGTCATCAGTTGATAAGTACGCTACATCTCACACTTGTTTTTGCTTGTCCTTCTTATTTAAT
>chr7D_398
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-------------------------------------CCAGCTGCTGTCGTTTTCATCTGACCACATCTTCAGCCAGTGA
ACTCGAAGTGGAACCACGGACATCTCAACGCACGCGCGCGCGCGCGCACCAAAGAGGCTCATATTCCACTCCACCGCATA
GCGTCCAAGGAAACCAGTTACGCGGAAACGGAGGGCGCGCGCCTTTCACATTCTACACGATCACCTACTTCCTTTCGGAA
AGAAGATTTTAAAATTATGTACGACTCTACAGCACGAACAAACCCATCGATCATTAGGGCGCACTGGCCTGGCCTGTACA
TGCTTTTCTCCTTTCTCCACCATGCATTAGTTAAGCAACAATTAATCAATCCCGCCATGTCTCCAAATCTGCCGCCACAC
TCCATTGCTGGCTCGCGCTCGTCAAAGCCCACCCACCAACCTTCCTGCCGTCTTCCTCCCCCCGCCC---CCCTCCTCCT
ATATATCGCCGTTTCCGGTCGCCACTTGACCTCCAACCAACGGAGCTGAGCTAGCTCACAGCTCACAAGTACTACGTACA
TGTATACGTGTTGATCGGAGCGAAGTTAGCGTATACAAGTGGCGAGTGGTAGCTAGAGGCGAGAGAGAGGGAAGCTAGAG
CAGTGATCATGGCCATTGGTGCCCAGGAGATCAAGTAC------TTCTCGCAGGCGAAGCTTGGCCGGCGGTGGCGGCGG
CCCGCGAGGGGGTTCCGGCTCAGCCCGACCCGCCTCTCCGTCCGCCGGCTACGCGCCAGGCTGTGGACGATGCTCGGCCT
GCTGGGCCGCTACTTTCGCGGCGTACGGCTCCCGCAGCTTACCAGGGGGCTCGTTGCCAGCAGCAGCTCTCCCGCGTCAA
CGAGCGGCGGCGGC---AACAAGAAAGGGCAGCAGCCGGCAGTGTCACAATCACCGGCGGCCGGTGGCAACGGCGCCAAG
CCGCGGAGGCCGCCGTGCATGCGGTCAAACTCCTTCTACGCGCGCGCCGTCGCGGACTGCCTGGACTTCATCAAGGGCAG
CAACGCCGCCCCGGTCGAGGACAGCCGCGGCGGCGCTGCCAGTGCCGTCCGGCACGGCCATGGCCAGCAGCATCACGTGC
TGAAGGCCACGTGAAGATCCACCTGTTGTGTACTGTAAAAGTGTAAATACGACGCGGCGCCGCATCGTTTCTCGCGTGGG
ATTTGATGGTTTTGTGAACTTGTTAGTTTCCGGCATGGTTCTTGGTGGTCGATCTGGATGCTCCTCTTTTCTCCTTGCTT
TTCTATGTTCTAGCAAGTACGTACGTACGTAGATTGTTTAGGG-TTAGCTGGTGCAAGAAAAAGATGGTGGATTGATTGA
TCGGCACAACATGCACGTGCCACTTGATCTATCTTCTGTTTTCTCTTTTTTTGAAGC--TCTATCTTCTGTT--------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S------S--------------------------------
---S-S--------S------SS------S---------S--SS-SS---------------------------------
-----------------S--------S-----------------S---------------------S---S----SS-SS
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---SS----S-----SS-----
-S-S--SS------------------------------------------------------------------------
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--------------------------------------------------------SS---------S------S--S-S
SSS-----------------------------------------------------------------------------
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-----------------------------S-----S--S--S--S-----S------------------------S----
-S------------SSSSSSS--SSSSS--SS-SSSS-------------------------------------SS----
-------------------------------------------------------------SSSS-S-------------
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-----------------------------------------------------------------------S--------
----S-------------------------S------------------------------------SSS----------
-------------------------------------------------------S-S---------------------S
------------------S-------------------------------------------------------------
--------------------------------------SSSSSS-----------------------S------------
----S---------------------------------------------------------------------------
---------------S--------S-------------------------------------------------------
------------------------------------------------------S----------S--------------
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----------------------------------------------------------S----------------S---S
--------------------------------------S----------------------S------------------
----------------------------------------------------------------------------S---
--S----------------------------------------S--------------S---------S-----------
S-------S----------------S---------S-------------------S------------------------
--------S--------------------S----------------------S---SSSSSSSSSS-----SS-------
S-----S------S-----------S---------------S----S-SS----S------S-S------SS------S-
S------S----S-----------SSSSS-------------S-----S--SS-------S---SS--SS-SSS-SSS--
--S--------------S--S-----------S-----SSS-S---SSS--SSSSSSSSSSSSSSSS-SSSS--S--SS-
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------------------------------------------------------------------------------SS
--S--------------------------SSS---------S-S--S------------S--S-S---------------
------------------S----------S----------S---S---------------------------------SS
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-
-------------------------------------------------S------S-----
>forward_283
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-----------------------GGTAACCGGGGTGTTTCTGT-------------------------------------
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>reverse_3769
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--------GCATGCACGTGCCACTTAAT----------------------------------------------------
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