>input_sequence_79067
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---------------------------------------------------------------------------ATGAA
GAGGCTGAGGTTTGGTGAGGAGGCGGAGGTGGACGGCGCCGCCATAGCCCATGAGGTGATGATGCTGCTCGCCGCGCGGA
GCGCCGCGATGGGGGGCGGCGAGCCGGTGGCGGTG------GCGCGGCCGCGCGCGTTCGAGTGCAAGACGTGCAATCGC
CAGTTCCCGTCGTTCCAGGCGCTCGGCGGCCACCGCGCCAGCCACAAGCGGCCGCGGGGCGATCCGATCAGCGAGCA---
---------GGCGCCGGTGCCCTCGAGGAGGCACGGGTGCACGGTGTGCGGCGTGGAGTTCGCGCTCGGGCAGGCGCTGG
GCGGGCACATGAGGCGCCACCGCGCCCACGAGCAGGAGGAGGAGGGCGCGAGGGGGCCGGTGGTCGCCGAGCGGGAGCCC
GGCGAGACAAGAAGGGGGCTGCTGCTGGGCTTGGACCTGAACGCTACTCCCGCTGAGCAGGCCTTGGACCTCTCTCTCTG
GGCCTGA-------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G489800
CCAGGGAAGAATAAGTTCGGAGGAGGACAGAACAATAG---AAAGGACGGCAGTTAGGACAAATAAGAATCACTGACTGC
TCATTTTTATTGCTTGCAACTTATAAAGTCTT--AACTTCTTTTGCTATGACTATGATAGTATGATGTGAGCTCAGTAGA
ACTAATAATGCAATTGTAAAAGAAGATAAACATCCACAGGGTAAGAATAAAGTTCAGACGACAA---AAAAATATCCGGA
GGACGGCAGGCAGGACGAATAACACCGCA---------TTTCAATTGCTTAATTGGAGCACCGTTGACTAGAGCAAAACT
ACAGAAATGGCTAACTAGCCTGC-----ACATAATTATGCATATAGAGCACTTAGACGAAGTACTAC-------------
---------------------------GTACGTAACAAGTGTCAGTCAGCTGTGAAGGATGGGTTTATCTGTCTAAAGTT
CAATCTAGTGAAGGATACTCAGGTAATGCAG-------------------------------------------------
------------------------------------------------------------------ATATACTCCTCTAA
AAAAGGCAGTTATACTAAACACTATAGTCGCTCTCAGCGCGCGCGTGGGTGCAGC--AGTCAGATTTCACTACCCCACAG
CTGCAAACTCATCT--ATGTAA------TACCATCCCAAAATAATAGGAGTACTCGATCT-AAAATTATCCCAAGTCAAC
TCCCACAACTGCCCTCAATCGATCTCAACCAACAAGCAGTAGCAGTCTAGCATGTCAACTCCTACGAAGTCGCACCACGC
GTTAATCTGTCATCACAGAGCACCCAAAGTCCAAACGAACAGATAATGATTGCGAGACTTTCGCAAAAGATGCATAGACA
ATGCTTCAAGTAGCATAATTTTTTTGAAAGGTCTACAAGTAGTATAGATGTGTAATACACTCTGGTTGCCAAAGAAAAAG
TA------------------------------------------------------------------------------
--------------------------------------------------------------TATAAGTCTGTATGATTA
ATTAGTAGTCATATCATTCTCCAAGCTAACTAACTGCTTGTACAGTTGTATACTACATGAGTGGATGCGGCCTGCCTATA
AATACGT-------CGTCGT-----------ACAACGGAACGCGAAGAGCTCCACCAATCA---------CGACAATGAA
GAGGCTGAGGTTTGGTGAGGAGGCGGAGGTGGACGGCGCCGCCATAGCCCATGAGGTGATGATGCTGCTCGCCGCGCGGA
GCGCCGCGATGGGGGGCGGCGAGCCGGTGGCGGTG------GCGCGGCCGCGCGCGTTCGAGTGCAAGACGTGCAATCGC
CAGTTCCCGTCGTTCCAGGCGCTCGGCGGCCACCGCGCCAGCCACAAGCGGCCGCGGGGCGATCCGATCAGCGAGCA---
---------GGCGCCGGTGCCCTCGAGGAGGCACGGGTGCACGGTGTGCGGCGTGGAGTTCGCGCTCGGGCAGGCGCTGG
GCGGGCACATGAGGCGCCACCGCGCCCACGAGCAGGAGGAGGAGGGCGCGAGGGGGCCGGTGGTCGCCGAGCGGGAGCCC
GGCGAGACAAGAAGGGGGCTGCTGCTGGGCTTGGACCTGAACGCTACTCCCGCTGAGCAGGCCTTGGACCTCTCTCTCTG
GGCCTGACCGAACCAAGGACCGGTGGGCTGCTGTTCCTTCTGCAATAGCTCCTCTA---CTACTCTTTTCTCTAACTTCT
TCTCAAAAAAAAAAAACTCTTTTCTCTAACCTAGGGGTGTGGTGTTTCTTTCTTGTACAATACTGGTGGCTGTCAATTGA
TTGATTTGGATTTCCACCC--AAAAAAAGATTTATTTGGGTTTGTGAATTGGAAGGATACAACAAGACTTTTCTTATGTT
ATGTCGTAAGTACCTGATTGCCTGAGTATGTACAACAGTCGACAAGTGATCATAAAACCCATAAAACATCTACACCTACT
GTGGTGACAAAAAA-ATTCTTGTGCGAATGGATTCCTCGTGTTTCTGTTGACCACTCTTTGCAAAACAGCCGAAAGAATT
GTTCGCAATGTTGAGAATGGGTAAAGCGTCTCAACTCCTATACACAGGAGCCCGCAGTGTATATATTGATTAGATCGGGA
GCTGGGTCGTAGGTAGGTTTACAGGTGGTTGATCGTACGAACGTCC--AAAGAAAGGTACATGCGAGGGATAGATAGATA
AGAGGTTAAGTAGGAAA----------ATATCTAACTAAACCCTGGCCTATATACTTGATGCCCACGCCCACACATTGGT
ACGTGACATACAAGAGAATATTTTCAACACTCTCCCTTATGCACAACTACACTAAGTTGAGATTATGCCTGAATTCTTCA
AAATTTATAGTAGGCAATGCTTTT-GTGAATCCATCTGCAAGCTGATCCTTTGAAGGAATAAACCTGACCTCTAACTGTT
TATTTGCAACTCGTTCTCTGACGAAGTGAAAATCTATCTCAATATGTTTGGTCCTGGCATGCAAAACTGGGTTAGCTGAC
AAATAAGTAGCACCAAGATTGTCACACCAAAGACAAGGGGGTTGCACTTGTGTAATTGAT-GTTCTTTCAACATGGACTG
GAGCCAAATGACTTCTGTTGTGGCATTTGGTAGTGCTTTGATTGCTGCTTCTATACTTGACCTACAG
>chr5A_1
CCAGGGACGAATAAGTGCGGAGGAGGACAGAACAATACTACAAAGGACGGCAGATAAGACAAATAAGAATCACTGACTGC
TCATTTTTATTGCTTGGAACTTATAAAGTC-T--AATTTCCTTTGCTATGACTATGATAGTATGAGGTGAGCTCAGTAGA
ACTAATAATGTGATTATAAAAGAAGAAAAACATCCACAGGGCAAGAATAA-GTTCAGACGAGGACACAAAAATATCCGAA
GGACGGCGGGCAGGACGAATAACACCGCATCGTGCTCGTTTCAATTGCTTAATTGGAACACCGTTGACTAGAGCAAAACT
ATGAAAATGGCTAACCAGATGCATACATAATTAAGCATAGGATACCG-------GCCTTCCTCTAAAAATCTTGGTAAAA
GGGAGCAGCAACACCAACTAACTAGGTGTACATAACAAGTGTCAGTCAGCTATGAAGGATGGCTTTATCAATCTAAAGTC
CAATCTAGTGAAGGATGGGAGTGAT-AATCTAATGAACTCCGCCTACTTATTTATTGCTTGAGTAGATGTTGCAGTGCAA
CCAATATAAGAACTTCATTTGAGGCGAGGTAT----TAACTAGTGCAATACAAAGAAGGAGTACTTC------TCTCAAA
AAAAAGCAATTATACTAAACACTT--GTTGCTCTCACTGCGCGCATGGGTGCTGCGCAGTCAGTCAGATTTCACCCGGAG
CTGCAAACTCATCTCTAGTAGTATCATCTATCATCCCAAATTATTAGGAGTACTTGATCT-AAATGTATCC-AAGTCAAC
TCCTCACAACTG-CTCTATCGATCTCAACCAACGAGCAGTGGCT--------TGTCAACTCCTAAGAAGTCGCACCACGC
CTTAATCTGTCATCACAGAGCGCCCAAAGTCCAAACGAACAGATAATGATTGAGAGACTTTCGCAAAAGAAGCATAGACA
ATGCTACAAGTAGCATAA-TTTTTTGAAAGGTCCACTAGTACTATAACCAATGAAAACAATAGCATGCTACAACAAAATA
GCGCGGACCTTAAAATATGCTATTAGCATGTTATATCGCGCTATAGCGTGATATTAGCGAGACGTTATACAATAATATAT
TTAGCAAGGTCATTCTCAATATGCTATTAGCGACGCTATAGCGCGCTATTCTTTTCAATGACTATAACACTGTATGATTA
ATTAGTAGTC-TATCATTCTCCAAGCTAACTACCC--------------------CATGAGTGAATGAGGCCGACCTATA
AATACGT-------CGTCGTCGTCTAGTAGAACAACGAAACGCGAAGAGCTCCACCGATCA---------CGACAATGAA
GAGGCTGAGGTTTGGCGAGGAGCCGGAGGTGGATGGTGCCGCCATAGCCCATGAGGTGATGCTGCTGCTCGCCGCGCGGA
GCGCCGCGATGGGGGGCGGCGAGC------CGGTG------GCGCGGCCGCGCGCGTTCGAGTGCAAGACGTGCAACCGC
CAGTTCCCGTCGTTCCAGGCGCTCGGCGGCCACCGCGCCAGCCACAAGCGGCCGCGGGGCGATCCGATCAGCGAGCAGGC
GTCGGCGCCGGCGCCGGCGCCCGCGAGGAGGCACGGGTGCACGGTCTGCGGCGTGGAGTTCGCACTCGGGCAGGCGCTGG
GCGGGCACATGAGGCGCCACCGCGCCCACGAGCAGGAGGGGAGCGCTCACGA---GCCGGTAGTCGCCGAGCGGGAGCCC
GGCGAGACAAGAAGGGGGCTGCTGCTGGGCTTGGACCTGAACGCTGCTCCCGCTGAGCAGGCCCTGGAACTCTCTCTCTG
GGCCTGACCGAACCAAGGACCGGTGGGCTGCTGTTCCTTGTGCGATAGCTCCCCTC---CTACTCT--------------
----------------------TCTCTAACCTAGGGGTGTGGTGTTTCTTTCTTGTACAATATTGGTGGTTGTCAATTGA
TTGATTTGGATTTCCACCCCAAAAAAAAGATTGATTTGGGTTTGTGAATTGAAAGGATACAACAAGACTTTTCTTATGTT
ATGTCGTAAGTACTTGATTGCCTGAGTATGTACAACAGTCGACAAGTGATCATAAAACCCATAAAACATCTACACCTACT
GTGGTGACAAAAAAAATTCTTGTGCGAATGGATTCCTCGTGTTTTTGTTGACCACTCTTTGCAAAACAGCCCAAAGAATT
GTTCGCAATGT---GAATGTGTAAAGAGTCTCAACTCCTATACACATGAGACCGCAATGTATATATTGATTAGATCGGGA
GCTGGGTCGTAGGTAGGTTTACAGGTGGTTGATTGTACGAACGTCC--AGAGAGAGATACATGCGAGGGATAGAGAGAAA
AGAAGTTAAGTAGGAAA----------ATATCTAACTAAACCCTGGCCTATA--CTTGATGCCCACGCCCACACATTGGT
ACGTGACATACAAGAGAAAATTTCCAACACTCTCCCTTAATCACAACTACACTAAATTGAGATTCTGCGTGAATTCTTCA
AAACTTCTAGTAGGCAACGCTTTT-GTGAATCCATCTGCAAGCTGATCCTTTGAAGGAATAAACCTGACCTATAACTGTT
TATTTGCAATTCATTCTCTGAAGAAGTGAAAATCTATCTCAATATGTTTGGTCCTGGCATGCAAAACTGGGTTAGCTGAC
AAATAAGTAGCACCAAGATTGTCACACCAAAGACAAGGGGGTTGCACTTGTGTAATTTAT-GTTATTTCAACATGGACTG
GAGCCAAATGACTTATGTTGTGGCATTTGGTAGTGCTTTGATCGCTGCTTCTGTACTTGACCTAGAG
>chr5B_1
CCAGGGGAGAATAAGTTCGGAGGAGGACAGAAGAA---TACAAAGGACGGCAGATAAGACAAATAAGAATCACTGGCTGC
TCATTTTTATTGCTTGCAACTTATAAAGTC-TTCAACTTCTTTTGCTATGACTATGATAGTATGAGGTGAGCTCAGGAGA
ACTAATAATGCAATTGTAAAAGAAGATAAACATCCACAGGGCAAGAAAAAAGTTCAGACGACAA---A-AAATATCCCAA
GGACGGCG--------------------------CTCGTTTCAATTGCTTAATTTGAACACTATTGACTAGAGCAAAACT
ATGAAATTGGGTAACCAGCTGCATACATACATAATTAGGCATATATAGAATACCGCCTTCCTCTAAAACTCTGGACGAAA
GGGAGCACCGGAGCAG------------------------------CAGCTATGAAGGATGGGTTTATCAATCTAAAGTC
CAATCTAGTGAAGGATGGGATTGATAAATCTAATGAACTCAGCCTACTTATTTGTTGCTATGAGTATGATGT-AGTGCAA
TCAATATAAGAACTTCATTTGAGGGGAGGTAGTAACTAGCTAGTGCAGTACAAAGAAGGCAAATATATATACTTCTCTAG
AAAAGGCAATTATACTAAACACC--AGTCGCTCTCACTGCGCGCATGGGTGCTGC--AGTCAGTCAGATTTCACTCGGAG
CTGCAAACTTATCT--AGTAGTATCATCTATCATCCCAAATTATTAGGAGTGCTTGATCTAAAATGTATCC-AAGTCAAC
TCCTCACAACTG-CTCTATCGATCTCAACCAACGAGCAGTAGCT--------TGTCAACTCCTACGAAGTCGCACCACGC
GTTAATCTGTCATCACAGAGCACCCAAAGTCCAAGCGAACAGATAATGATTGAGAGACTTTCACAAAAGATGCATAGACA
ATGCTACAAGTAGCATAA-TTTTTTGAAAGGTCCACAAGTACTATAGTAGCTAGTATAACACT-----------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TGTATGATTA
ATTAGTAGTCGTATCATTCTCCGAGCTAACGAACTAGCTCGTACTACTACATAA-------TGGATGCGGCCAGCCTATA
GTATAAATACGTTACGTCGTCGTCTAGTAGTAGCACACAACGCGAAGAGCTCCATCTCAGTCCATCGATCCGACAATGAA
GAGGCTGAGGTTTGGCGAGGAGGCGGAGGTGGACGGCGCCGCCATAGCCCATGAGGTGATGATGCTGCTCGCCGCGCGGA
GCGCCGCGATGGGGGGCGGCGAGC------CGGTGGCGGTGGCGCGGCCGCGCGCGTTCGAGTGCAAGACGTGCAACCGC
CAGTTCCCGTCGTTCCAGGCGCTCGGCGGCCACCGCGCCAGCCACAAGCGGCCGCGGGGCGACCCGATCAGCGAGCAGGC
GCCGGCGCCGGCGCCGGTGCCCGCGAGGAGGCACGGGTGCACGGTGTGCGGCGTGGAGTTCGCGCTCGGGCAGGCGCTGG
GCGGGCACATGAGGCGCCACCGCGCCCACGAGCAGGAGGGGAGCACTCAC---GGGCCGGTAGTCGCCGAGCGGGAGCCC
GGCGAGACAAGAAGGGGGCTGCTGCTGGGCTTGGACCTGAACGCTACTCCCGCTGAGCAGGCCATGGACCTCTCTCTCTG
GGCCTGACCGAACCGAGGACCGGTGGGCTGCTGTTCCTTCTGCAATAGCTCCCCTCCTACTACTCT--------------
----------------------TCTCTAAC--------------------------------------------------
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>chr2D_1870
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--------TGTTAAGAATGGGTAAAGCGTCTCAACCTCTATACACAGGAGCCCGCGGTGTATTTATTGATTAGATCGAGA
GCTAGGTCTC--GTAGGTTTACAGGTGGTTGATCGTACAAACGACCAGAGAGAGAGATACATGCGAGGGATAGAGAGATA
AGAAGATAAATAGGAAAATCTCTAACTATCTCTAACTAAACCCTGACCTATA--CTTGATGTACACGCCCACACATTGGT
AC-TGACATACAA-AGAATATTTCCAACACTCTCCCTTAATCACAACTATACTAAGTTGAGATTACGCCTGAATTCTTCA
AAACTTCTAGTAGGCAATGC-TTT-GTGAATCCATCTGCAAGCTGATCCTTTGAGGGAATAAATCTGACCTCTAACTGTT
TATTTGCAACTCATTCTCTGACAAAGTGAAAACCTATCTCAATATGTTTAGTCCTGGCATGGAAAATTGGATTAGCTGAC
AAATACGTAGCACCAAGATTGTCACACCAAAGACAAGGAGGTTGCACTTGTGCAATTTTAAGTTCTTTCAACATGGACTG
GAGCCAAATGACTTCTGCTGTGGCATTTGCTAGTGCTTTGTACTCTGCTTCTGTACTTGACCT----
>chr6B_1870
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--------TGTTAAGAATGGGTAAAGCGTCTCAACCCCTATACACAGGAGCCCCCGGTGTATTTATTGATTAGATCGAGA
GCTACATCTC--ATAGGTTTACATGTGGTTGACCGTACAAACGACC--AGAGAGAGATACATGCGAGGGATAGAGAGATA
AGAAGTTAAACAGGAAAATCTCTAACTATCTCTAACTAAACCCTGACCTATA--CTTGATGTACACGCCCACACATTGGT
ACGTGACATACAA-AGAATATTTACAACACTCTCCCTTAATCACAACTATAGTAAGTTGAGATTACGCCCGAATTCTTCA
AAACTTCTAGTAGGCAATGC-TTTTATGAATCCATCTGCAAGCTGATCCTTTGAGGGAATAAATCTGACCTCTAACTTTT
TATTTGCAACTCGTTCTCTGACAAGGTGAAAATCTATCTCAATATGTTTAGTCCTGGCATGGAAAAATGGATTAGCTGAA
AAATACGTGGCACCAAGATTGTCACACCAAAGACAAGGAGGTTGCACTTGTGCAATTTTAAGTTCTTTCAACGTGAACTG
GAGCCAAATGACTTCTGTTGTGGCATTTGCTAGTGCTTTGTCCTCTGCTTCTGTACTTGACCT----
>chr4A_1875
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-------------AGAATGGGCAAAGCGTCTCAACCCCTATACACATGAGCCCGTGGTGTATTTATTGATTAGATCGAGA
GCTAGGTCTC--GTAGGTTTACAGGTGGTTGATCGTACAAACGACC--AGAGAGAGATACATGCGAGGGATAGAGAGATA
AGAAGATAAACAGGAAAATCTCTAACTATCTCTAACTAAACCCTGACCTATA--CTTGATGTACACGCCCACACATTGGT
ACGTGACATACAA-AGAATATTTCCAACACTCTACCTTAATCATAACTATACTAAGTTGAGATTACGCATGAATTCTTCA
AAACTTCTAGTAGGCAATGC-TTTTGTGAATCCATCTGCAAGCTGATCCTTTGAGGGAATAAATCTGACCTCTAACTGTT
TATTTGTAACTCGTTCTCTGACAAAGTGAAAATCTATCTCAATATGTTTAGTCCTGGCATGGAAAACTGGATTAGCTGAC
AAATACGTAGCACCAAGATTGTCACACCAAAGACAAGGAGGTTGCACTTGTGCAATTTTAAGTTCTTTCAACATGGACTG
GAGCCAAATGACTTCTGCTGTGGCATTTACTAGTGCTTTGTACTCTGCTTCTGTACTTGACCT----
>SNPs
-------------------------------------S---------------S--S-----------------------
------------------------------S----------------------------------S--------------
-----------------------------------------S------------------------------------S-
-------S-------------------------------------------------S----------------------
-SSS-----------S---SSSS----------------------S--S-SSSS-S-SSSS-SSS-S-------------
-------------------------------S-------------------S-----------------SS--------S
----------------SSSSSS-SS-SSSSS-------------------------------------------------
-------------------------------------------------------------------------S------
--------S--------------SS-----------SS------S-------S----------SSSSSSS-SS---SS--
-----------------SSSSS--------S---------S--S----------S---------SS-----S--------
---SSSS-SSSSS---S----------------S---------SSSSSSSSS----------------------------
----------------------------------------------------S---------------------------
-----S------------S--------------S-------S-----SS-SSS--S-------SS-SSSSS--S----SS
SS------------------------------------------------------------------------------
-------------------------------------------------------------------SS-----------
----------S------------------------SSS-SSSSSSSSSSSSSSSS-----------------S-------
-------------------------------------S------------------S-----------------------
---------------S----------------------------------------------------------------
------------------------SSSSSS----------------------------------------------S---
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----------------------S---------------------------------------------------------
---------------------------------------S-SSS-SSSSSSSS--------S------------------
---------------------------------------------------------------S----------------
----------------------------------------------------S--S----------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS----------------------------------------S------S----------
--------------------------------S------------------S----------------------------
-------------S------------------------------------------------------------------
--------------------------------------------S--------------------------S--------
------------S-------------------------------------------------------------------
-------------------------------------------------S---S--S-----------------S-----
---S------------------------------------------------SS--------------------------
-----------------------S---------------SS---------------------------------------
---S--S-------------------------------------------------------------------------
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---------------------------------------------------------S----------------------
------------------------------------------S---------S-----------S--
>forward_707
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-----------------------------------------------TGGGTGCAGCAGTCAGATTT-------------
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>reverse_1824
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---------------------------------------------------------------TTGGACCTCTCTCTCTG
GGC-----------------------------------------------------------------------------
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>forward_813
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-------------------------------------------------------------------------AGTCAAC
TCCCACAACTGCC-------------------------------------------------------------------
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>reverse_2370
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-------------------------------------------------AAGAAAGGTACATGCGAGGGA----------
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