>input_sequence_79064
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------------------------------------------------------------------------ATGTCGTC
GTCGTCGCTGTCGCCGGGAGGTGGGAGGCTGTCGGGCTCGGACGGCGACTCGGGGGCGACGTTCTCGGCCGGGGACAACC
GGCGGGAGAAGAGGCGGCTGTCGAACCGGGAGTCGGCGCGGCGGTCGCGGCTGCGGAAGCAGCAGCACCTGGACGAGCTG
GTGCAGGAGGTGGCGCGGCTCAAGGCCGAGAACGCGCGCGTGCTGGCGCGCGCCAACGACATCACCGGGCAGTTCGTGCG
CGTGGACCAGGAGAACACCGTGCTCCGGGCGCGCGCCGCCGAGCTCGGCGACCGGCTGCGCTCCGTCAACCAGGTGCTCC
GCGTCGTCGAGGAGTTCAGCGGCGTCGCCATGGACATCCAGGAGGAGTGCCCGCCCGACGACCCCCTGCTCCGGCCGTGG
CAGATCCCGTACCCTGCCACCGCCATGCCCATCGCCGCCACCGCCACGCACATGCTCCAGTACTGA--------------
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>chr5D_1_TraesCS5D01G100700
CCATCTGGAGAGGGCCACGGAGAGCCACCCAGCAGCACCGGACCAGCAAAGATTCCTCC-ACCTTTCTACCCTCTCCGTC
CATCTAGAATGCACATACGCCGTCGCCGTGGCCTGGCAAAATTACGGAAACACCCTCGCATGGAATTACCAGAACGCCCT
CGCGTGTGAAGTTACAGGAGTGCCCTTCCCCGGCCAATAAATAACCCCTCCGCCCTGACCTGATCCCCTCCCCCTTCCTC
CTCCTCTTCCTCCTCCGATTGGGTGGCTGCCATTGCTCTCCACAT-------CAACCAAGCTCGAGCTCCCANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCTTTGGGTTGAGGGAGCTGCTGTT
CTTGCT-----AGGCTAGGCTAGATCAGCGGGA-GAGGCTGGGTCGTTGTTCCGCTTGAAATCTCTGGGTTTTGTTGCGC
TGGAGGTTCTTGCTGGCCATGGTTTGTCCAGGCATGCTGAGGCGCAATCTCTGAGCTTTATGAAGATCGCCACTCACCTG
CGCCGGTGCTGCTTCCTCCAGTCCTTCTCCGTCGTCTTCCTCTACTACTTTTATGTGATCTCATAATTGGCCCTCTCAAA
TCCGCCGTCGCTAGCAGTAAACTATTTCCTC---CTTCTTCTTCTTCTTGT---TTCCTTTTCCTGCGTCAACAAGTGAT
AAATAAGAACCGTAGCAG------------CAGCAGCAGCAGTAGCCAGGTAGTAGTGATTCCGGTGCAAAGATGTCGTC
GTCGTCGCTGTCGCCGGGAGGTGGGAGGCTGTCGGGCTCGGACGGCGACTCGGGGGCGACGTTCTCGGCCGGGGACAACC
GGCGGGAGAAGAGGCGGCTGTCGAACCGGGAGTCGGCGCGGCGGTCGCGGCTGCGGAAGCAGCAGCACCTGGACGAGCTG
GTGCAGGAGGTGGCGCGGCTCAAGGCCGAGAACGCGCGCGTGCTGGCGCGCGCCAACGACATCACCGGGCAGTTCGTGCG
CGTGGACCAGGAGAACACCGTGCTCCGGGCGCGCGCCGCCGAGCTCGGCGACCGGCTGCGCTCCGTCAACCAGGTGCTCC
GCGTCGTCGAGGAGTTCAGCGGCGTCGCCATGGACATCCAGGAGGAGTGCCCGCCCGACGACCCCCTGCTCCGGCCGTGG
CAGATCCCGTACCCTGCCACCGCCATGCCCATCGCCGCCACCGCCACGCACATGCTCCAGTACTGATCGATCCGGTGATG
ATTGGGTCAATAATTGAGGATCCCCTGTAGGAGCGGAGCTGAGCTGTGGCTGGCAAGAGGAAGAAGATCTACCCTACTTG
GCTGCTGCCTTGAGGATTATTACCAAGGCGTAGTTTGCTGCTATATGTTGTGTTTATTAT-------TATGTTTCAGTAA
GTGTCCGCCGTCGTCGTCCTCGTCCTCC---ATGTCCTATGTAATGTAACAGTAATAAGGGTTA------TGTATGGTTG
TGTTCTATGTATCGTGAATTTGTGATAATTCTGTTCAATGTTATTACCATGTCATGTTATTATGTTTGGTTCCAGTGTTC
AGTGTAAATTCTGCTGTGTTCCAAGTATTAATTCAAGTGTTTGATCAGATTTTACGATAGTCACCGGATGTTGGTTTCTT
GTTGAATTGAATGAAGAACAATTTGGCCAGTTTTGCAGATTCACATGGTTTTTTGAGCCCACACCAAGTC-GTATAAATC
TGTGGGCTCCTATCAAATCACAAATAAGGTGGAAGGCATCGAATCACCTTGAGTGCAGAGAAACATCAAGTGCTCAAAAG
CAGAGAAAGATCTTCAGCTTCAAGGTTCCTCCTGGATTCTATCCGACAGCTCTCTGTTCTATGTTGTTTATTTTCT----
-TGCATCTATTCCAACCTTTGCAGAGGCAAAAGCAAGGTGACAAGAATCAAATGGTACCACTAGATCACAACCCATGTCA
CAACCATCAAGATATGTGTTCC------AACAGGGAAGAAACAGAATATACAT---------------------------
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-------------------------------------------------------------------------CAGCACC
TTTGATCAGTAATCACGCAATAATGGTTAATGACGGTAGTGTAAGCAAGCAGAACAAGATCCGTCATCAGAAAACTAAAC
TCATGACCGCATACGAAAACGACGGTGAAAGGCAAGGGAAAACCTTAAAAACTTATCTTGACCGAACCAAATGACATCAC
CAGATAGAAGAACACCAGTTATAAGTCATAATGATGGTGCTTGTTCCATTCATGATAATATCAAACACAAGGAG
>chr5A_1
CCATCTGGAGAGGGCCACGGAGAGCCACCCAGCA---CCGGACCAGCAAAGATTCCTCCAACCTTTCTACCCTCTCCGTC
CATCTAGAATGCACATACGCCGTTGCCGTGGCCTCGGAGAATTACGGAAACACCCTCGGGTGGGATTACCAGAACGCCCT
CGCGTGTGAAGTTACAGGAGTGTCCTTTCCCCGCCAATAAATAACCCCTCCGCCCTGACCTGATCCCCTCCCCCTTCCTC
CTCCTCTTCCTCCTCCGATTGGGTGGCTGCCATTGCTCTCCACAC-------CATCCAAGCTCGAGCTCCCATTTCATCA
CCACTCTGCTAGCCCGAGTCTCCCTCTTGACCCACCGTCGGTTTCAGGCCTCGAAATCCTCGTCCCAGTCTCTTTCTCCT
TTCAAGAAGA----------------------------------------------------------------------
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----------------------------------------------------ATTTCTTTGGGTTGAGGGAGCTGCTGTT
CTTGGTAGGACAGGCTAGGCCAGATCTGGGGGA-GAGGGTGGGTTGTTGTTCCGCTTGAAATCTCTGGGTTTTGTTGCGC
TGGAGGTTCTTGCTGGCCATGGTTTGTCCAGGCATGCTGAGGCGCAATCTCTGAGCTTTATGAAGATCGCCACTCACCTG
CGCCGGTGCTGCTTCCTCCAGTCCTTCTCCGTCGTCTTCCTCTACTACTTTTATGTGATCTCATAATTGGCCCTCTAAAA
TCCGCCGTCGCTAGCAGTAAACTATTTTCTC---CTTCTTCTTGTTCTTCTTGCTTCCTTTTCCTGCGTCAACAAGTGAT
AAATAAGAACCGTAGCAGCAGCATCATCATCAGCAGCAGTAGTAGCCAAGTACTAGTGATTCCGGTGCCAAGATGTCGTC
GTCGTCGCTGTCGCCGGGAGGCGGAAGGCTGTCGGGCTCGGACGGCGACTCGGGGGCGACGTTCGCGGCCGGGGACAACC
GGCGGGAGAAGAGGCGGCTGTCGAACCGGGAGTCGGCGCGGCGGTCGCGGCTGCGGAAGCAGCAGCACCTGGACGAGCTG
GTGCAGGAGGTGGCGCGCCTCAAGGCCGAGAACGCGCGCGTGCTGGCGCGCGCCAACGACATCACCGGGCAGTTCGTGCG
CGTGGACCAGGAGAACACCGTGCTCCGGGCGCGCGCCGCCGAGCTCGGCGACCGGCTGCGCTCCGTCAACCAGGTGCTCC
GCGTCGTCGAGGAGTTCAGCGGCGTCGCCATGGACATCCAGGAGGAGTGCCCGCCTGACGACCCCCTGCTCCGGCCGTGG
CAGACCCCGTACCCTGCCACCGCCATGCCCATCGCCGCCACCGCCACGCACATGCTCCAGTACTGATCGATCCGGTGATG
ATTGGGTCAATAATTGAGGATCCCCTGTAGGAGCTGAGCTGAGCTGTGGCTGGCAAGAGGAAGAAGATCTACTCTACTTG
GCTGCTGCCTTGAGGATTATTACCAAGGCGTAGTTTGCTGCTATATGTTGTGTTTA---T-------TATGTTTCAGTAA
GTGTCCGTCGTCGTCCTCC---TCCTCC---GTGTCCTATGTAATGTAACAGTAATAAGGGTTAATTATATGTATGGTTG
TGTTCTATGTATCGTGAATTTGTGATAATTCTGTTCAATGTTATTACCATGTCATGTTATTATGTTTGGTTCCAGTGTTC
AGTGTAAATTCTGCAGTGTTCCAAGTAATAATTCAAGTGTTTGATCAGATTTTACAACAGTCACCGGATGTTGGTTTCTT
GTTGAATTGAATGAAGAACAGTTTGGCCAGTTTCGCAGATTCACATGGTTTTTTTAGCCCACACCAAGTCTGTGTAAATC
TGTGGGCTCATGTCAAATCACAAGTAAGGTGGAAGGCATCGAATCAGCTTGAGTGCAGAGAAACACCAAGTGCTCAAAAG
CAGAGAAAGATCTTCAGCTTCAAGGTTCCTCCTGGATTCTGTCCGACAGCTCTCTGTTCTATGTTGTTTTATTTTCTTGC
ATGCATCTATTCCAACCTTTTCATAGGCAAAAGCAAGGTGACAAGAATCAAATGGTACCACTAGGTCACAATCCATGTCG
CAACCATCAAGATATGTGTTAC------AACAGGGAAGAAACAGCGTATACAT---------------------------
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-------------------------------------------------------------------------CAGCACC
TTTGATCAGTAATCACGCAATAATGGCTAATGACTGTAGCGTAAGCAAGCAGAACGAGATCCGTCATCAGAAAACTAAAC
TCGTGACCGCATACGAAAACGACGGTGAAAGGCAAGGGAAAACCTTAAAAACTTATCTTGACCGAACCAAATGACATCAC
CAGATAGAAGAGCACCAGTTATAGGTCATAATGATGGTGCTTGTTCCATTCATGATAATATCAAACATAAGGAG
>chr5B_1
CCATCTGGAGAGGGCCACGGAGAGCCACCCAGCA---CCGGACCAGCAAAGATTCCTCT-ACCTTTCTACCCTCTCCGTC
CATCTAGAATGCACATACGCCGTTGCCGTGGCCTCGCAAAATTACGGAAACACCCTCGGGTGGAATTACCATAACGCCCT
CGCGTGTGAAGTTACTGGAGTACCCTTCCCCCGCCAATAAATAACCCCTCCGCCCTGACCTGATCCCCTCCCCCTTCTTC
CTCTTCCTCCTCCGACGATTGGGTGGCTGCCATTGCTCTCCAGAGTCCAGGCCAACCAAGCTCGAGCTCCCATTTCATCA
CCACTCTGCTAGCTCGAGTCTCCCTCTTGATTCCCCGTCTGTTTCTAGTCTCGCAATCGTCGTCCCAGTCTCTTTCTCCG
TCCAATAAGA----------------------------------------------------------------------
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----------------------------------------------------ATTTCTTTGGGTCGAGGGAGCTGCTGTT
CTTGCT-----AGGCTAGGCTAGATCTGGGGGGGGAGGCTGGGTCGTTGTTCCGCTTGAAATCTCTGGGTTTTGCTGCGC
TGGAGGTTCTTGCTGGCCATGGTTTGTCCAGGCATGCTGAGGCGCAATCTCTGAGCTTTATGAAGATCGCCACTCACCTG
CGCCGGTGCTGCTTCCTCCAGTCCTTCTCCGTCGTCTTCCTCTACTACTTTTATGTGATTTCATAATTGGCCCTCTCAAA
TCCGCCGTTGCTAGCAGTAAACTATTTTCTTTCTCTTCTTCTTCTTCTTCTCGCTTCCTTTTCCTGCTTCAACAAGTGAT
AAATAAGAACGGTAGCAGCA---TCATCATCATCAGCATTAGTAGCCAAGCAGTAGTAATTTCGGTGCCAAGATGTCGTC
GTCGTCGCTGTCGCCGGGAGGCGGGAGGCTGTCGGGCTCGGACGGCGACTCGGGGGCGACGTTCGCGGCCGGGGACAACC
GGCGGGAGAAGAGGCGGCTGTCGAACCGGGAGTCGGCGCGGCGGTCGCGGCTGCGGAAGCAGCAGCACCTGGACGAGCTG
GTGCAGGAGGTGGCGCGCCTCAAGGCCGAGAACGCGCGCGTGCTGGCGCGCGCCAACGACATCACCGGCCAGTTCGTGCG
CGTGGACCAGGAGAACACCGTGCTCCGGGCGCGCGCCGCCGAGCTCGGCGACCGGCTGCGCTCCGTCAACCAGGTGCTCC
GCGTCGTGGAGGAGTTCAGCGGCGTCGCCATGGACATCCAGGAGGAGTGCCCGCCCGACGACCCCCTGCTACGGCCGTGG
CAGATCCCATACCCTGCCAACGCCATGCCCATCGCCGCCACCGCCACGCACATGCTCCAGTACTGATCGATCCGGTGATG
ATTGGGTCAATAATTGAGGATCCCCTGTAGGAGA-----TGAGCTGTGGCTGGCAAGAGGAAGAAGATCTACCCTACTTG
GCTGCTGCCTTGAGGATTATTATCAAGGCGTAGTTTGCTGCTATATGTTGTGTTTA---TTTATTAGTATGTTTCAGTAA
GTGTCCGTCGTCGTCCTCC---TCCTCCTCCATGTCCTATGTAATGTAACAGTAATAAGGGTTA------TGTATGGTTG
TGCTCTATGTATCGTGAATTTGTGATAATTT-----AATGTTATTACTATGTCATGTTATTATGTTTGGTTCCAGTGTTC
AGTGTAGATTCTGCTGTGTTCCAAGTAATAATCAAAGTGTTTGATCAGATTTTACGACGGTCACCGGATGTTGGTTTCTT
GTTGAATTGAATGAAGAATAGTTTGGCCGGTTTTGTAGATTCACATGGTTTTCTGAGCCCACACTAAGTC-ATATAAATC
TGTGGGCTCATATCAAATCACAAGTAAGGTGGAAGGCATCGAATCACCTTGAGTGCAGAGAAACATCAAGTGCTCAAAAG
CAGAGAAAGATCTTCAGCTTCAAGGTTCCTCCTGGATTCTGTCCGACAGCTCTCTGTTCTATGTTGTTTATTTTCT----
-TGCATCTATTCCAACCTTTGCAGAGGCAAAAGCAAGGTCACAAGAATCAAATAGTACCA---GGTCACAACTCATGTCA
CAACCATCAAGATATGTGTTCCTGTTCCAACAGGGAAGAAACAGCATATACATGAGTGCGGCGTTTCGGTGCCCGGGTGC
ATCTGCACCCGTTCAAAAAAAAATTCGTAAAAAATTCCGAAAAAATCAAAAAATTCCGAAAAAAATTGAGGTGGTGGACA
ATTTGATGCGTGAGGTGCGCCCCAATTTTCAAAACATTGGGACTTATGTGCAGCTCTCAGCAAAAAAGACAAATCAGACC
AAAACAGTATATGAACAGTACACATTTTTACAGACCTCCGATTTGTCTTTTTTGCTAAGAGCTGCACATAAGTCCAAATG
TTTTGAAAATTGGGGCGCACCTCACACATCAAATTGTTCACCACCCCAATTTTTTTTGGAATTTTTTGAATGTTTTTAGT
ATTTATTTTGATTTTTTTGGTGAGCGCAGGTGCAGATGAGCTCGGGCTCAGATTTGGATTTTCGCATATACATCATCAAC
TTTGATCAGTAATCAAGCAATAATGGTTAATGACGGTAGTGTAAGCAAGCAGAACGAGATCCGTCATCAGAAAACTAAAC
TCATGACCGCATATGAAAACGACGGTGAAAGCCAAGGGAAAACCTTAAAAACTTATCTTGACCGAACCAAATGACATCAC
CAGATAGAAGAGCACCAGTTATAAGTCATAATGATGGTGCTTGTTCCATTCATGATAATATCAAACACAAGGAG
>SNPs
----------------------------------SSS-------------------------------------------
-----------------------S----------S-----------------------SS--------------------
-------------------------------S------------------------------------------------
--------------------------------------------S---------------------------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
--------------------------S-S---------------------------------------------------
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---------------------------S---------------------S------------------------------
---------------------------------------S--------S-------------------S-----------
---------------------S------------------------------------------S---------------
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-----------------S--------------------------------------------------------------
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----------------------------------S---------------------------------------------
--------------------------------------------------------SSS---------------------
-------S-------S---SSS----------------------------------------------------------
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---------------------------S-----------------------------S----------------------
--------------------S-----------------------------------------------------------
---------S-------------S--------------------------------------------------------
----------------------------------------S---------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------S-----------------------------------
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-------------------------------------------------------S------------------------
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-----------S--------------------------------------------------------------
>forward_140
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----------------------------------------ATTACGGAAACACCCTCGCA--------------------
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>reverse_1696
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---------------GTCCTCGTCCTCCATGTCCT---------------------------------------------
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