>input_sequence_79059
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-------------------------------------------------------------------ACAAACCAAC--G
GAGACGATCTGGACCCGCCGCCACAGAACCCAGTAACTGCCGC------------CGTCGCCGCCGCTTCCATGGACAGC
ACGGTGGACGCAATGGCGGCGGCCTACAAGGCGCTGGTGGACGCCGCGGCGGCGGTCGCCTTGCGCGAGCCCGACCGCGA
GGCGGCGCTGCGGGAACTGCAGCGCTGCCTGCACGCCTTCAACGAGTCCTGCGACCGCGCCGAGGACCTCGTCCGGGCGG
CCGCCGCCACCCTCGATTTCGCGCCCGCCGCCGCCACAGCCCTCGACGCGCTCGGCAACACCGTGCGCGGCATCGAGCAG
GACGCCCAGGCCGGCCCCGAC---GACGGAGACGAGGAGGAGGTGCAGGATGGGAAGGGCCCCGCGCCCTCGCCGCCGGC
GGCGCCCGTGGCGCTGGCGGCCGACGACAACTAGCTCGATCCATCGATCTG---GTCTCTTGTGGCCGTGATGCTAATCA
A-------------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G387600
TAAATAATATAAAATTCTATAAAAAAATATACAAAAATGGTATTATAATAGCATAAAACAATCAAAA-TT-ATAGATACG
TTCGAGACGTATCACTGTCCTCTTCAACCACATCCTTTGCTCCAGCGAGTGCACACTATCATACCCTCAACAGAAACTAG
CCTCCCTTTCAGTCGATGTCACTATTGCGCTCGGGTGGGGTGGAAAGGGCACCGATCGTGCAATCCAGAGAGAGATCATT
GACAACACGACCAAACACATAAGGTCCATGTGTCACGGGGCCAGGATCAAGCAGGGCCCGCTGGCCATCAAGGCAAAAAT
CCAACTCA-GGGTAAAAGAAAGGTCAACCCAAGTGACTGATGAGATCGTTTGGCGAACACCCCGTGGCTG---AAATCAC
CTAAATTGGGGAGACCCTGAGCGTGCGAGCCTCGGCCACACATAAACTTGAAGGAGATATCGAATTATCATGTTGACAGG
TATGGTCAGGTTAGAGTTGGAGCTCAATATGTGCAATAAAATTTGTGAACACACAATTCTACGTGAATGAAAAAACTAAG
GAAAAAGTACCAACTTTGGTGCCCGAGTAATGAATCACGCGGTGCAAACTGCGATC------------------------
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------------------------------------------------------------TACTCTTCAAGGCGCGATCG
AACCGGCGTCGCCACGTATCACTTGCGTGAGATCCATATTGCACGTGTCACTTTCTGAGAGGTTATGTTTGCGTAGCATG
AATCCTTTCGGTGCGAGACCCG--CTATTAAAAAG-AAAAAAATCTATAGTAATGAACGCGTGCACGAAATGAGGCA-GA
ATTAATTTCTCCACTGGAAGATACAAATAACTAGTCATGCA--------ACATCTAAATCGAGAGATATTTCTCAATAAA
TCGAAAGATTAGAGCAATTACATAGCACAAGCTATATAAAAAAATAGAAGTATCTTCTTTAAAAAA---AGCTAAAAGCT
TCGAGGAGCCGTAGGTAGAGGTGTGCATATAAAGGGAGTGCCAACTGCCAAGCCAAG--GACCCAACACAAACCAAC--G
GAGACGATCTGGACCCGCCGCCACAGAACCCAGTAACTGCCGC------------CGTCGCCGCCGCTTCCATGGACAGC
ACGGTGGACGCAATGGCGGCGGCCTACAAGGCGCTGGTGGACGCCGCGGCGGCGGTCGCCTTGCGCGAGCCCGACCGCGA
GGCGGCGCTGCGGGAACTGCAGCGCTGCCTGCACGCCTTCAACGAGTCCTGCGACCGCGCCGAGGACCTCGTCCGGGCGG
CCGCCGCCACCCTCGATTTCGCGCCCGCCGCCGCCACAGCCCTCGACGCGCTCGGCAACACCGTGCGCGGCATCGAGCAG
GACGCCCAGGCCGGCCCCGAC---GACGGAGACGAGGAGGAGGTGCAGGATGGGAAGGGCCCCGCGCCCTCGCCGCCGGC
GGCGCCCGTGGCGCTGGCGGCCGACGACAACTAGCTCGATCCATCGATCTG---GTCTCTTGTGGCCGTGATGCTAATCA
ATCTTCTTGGTTTTTTCTCTGCTGATATAGTGAGCCATAATGGAGCCAGAATTAATGTTGTAATGCAGACAAATTCGTCG
CATCATCTTT-CTTGAGATTGAGAGAAAACAAGAACTGATCTTGATGTTGTGATCGTGATATTGCTGCGTACGTGTTGCC
CTCGGGCTCGCGGCGACCTTTTAACATGGCGAAAACAGTAGAAAAACAGGTGTACGTTCAGGGC--AAATGGGAGTTGCA
GGTTGCTGTCAAAGCTCATCCATACGTACAGCCTGTGGATTCGGAGGAACCGGGTAACCTCCACATACAAGAATCAGAAG
CAG----CGAGCGAGCGAGAGATCTGATCTGACAGTGAAAACCACACATGCAGGGCAAATCCAAAGTAGGACGAGCCC--
--------CCTATCCTGTCACTCTCTTGTAAACGAGAGGCGGCATCGAGCAGCAGGCCTGCCGACAGAAACAAGTCGATC
GCCAACAAATATCACTGTGGCCATCCATCCAATCATGCACACGATTCAGTTTAGGAAGTTTGTCTGATGATTGCGATATC
CGTTGTTGCCATCTGCACAGCCCAATCGTACGGGCGCAGGTGGATGG-AGGGGATTGTGTGGGGGTTGCAACTGCAGTGT
CATGTCAGCTTGGGGAGTTATACTACTACTCCTACTCCCTCCGTTCTGAATTACTTGTCTTGGATTTGTCTAGATACGGA
TGTATCTAGCACTAGTTTGCAAGGAGACCGGTAGGCCTAGTCGGCACAGATG----TGCCTGCCTGCCTGCCAGTTGAAG
GCAAGGCTCTCCGTTAAGGTGACAGTGACGCTACAAGATGGTCCGAGGCAAAGCCTTTTTGTGTCATGCACTCCAGTTCC
ATCGCACAACTCACAGGAAATAACCCAAGAGAGGTTAACATCCAAACTGACAAAACAGAGAATGTCTTAT-----TTGAC
ACTGCTAGCTTCTCTATTCGAC-GGTGGATAAAAATTATGTATTTCCTATCTAACACCGATTCTAAATT
>chr5B_1
TAAATAATATAAAATTCTATAAAAAG-TATACAAAATTGATATTATAACGGCATGAAACAATAAAAAAGTAATATATACG
TTTGAGACGAATTACTGTCCTCTTCAACCCCATCCTTTGCTCTAGTGAGTGCACACTGTCATACCCTCAACAGAAACTCG
CCTCCTTTTCAGTCGCTATCACTATTGCGCTCGGGTGGGGTGGAAAGTGCACCGATCGTGCAATCTAGAGAGAGATCATT
GACAACACGACCAAACACTTAAGGTCCATGTGTCATGGGGCTAGGATCAAGCAGGGCCTGCTGGCCATAG-GGGAGAAAT
ACAACTCAGGGGTAAAAGAAAAGTCAACCAAAGTAACTGCCGAGATCGTTTGGCGAACACCCCGCTGCTGCTGAAATCAC
CTAAATTGGGGGGACCCTGAGCGTGCGAGCCTCAACCACACATAAACTTGAAGGGGATATCGAATTGTCACATTGACGGG
TATGGTGAGGTTAAAGTTGGAGCCCAATATGTGCAATGAAATTTCTGAACACACAATTCTACGTGAATGAAAGAACTAAG
GAAAAAGTACCAACTCTCTTGCCCGAGTAGTGAATCACGCGGTGCAAATTGTGATA------------------------
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------------------------------------------------------------TACTCTTCAAGGCGTGATCG
AACCGACGTCGCCACGTATCACTTGCATGAGATCCATATTGCACGTGTCACTTTCTGAGAGGTTATGTTTGCGTGGCATG
AATCCTTTTGGTGCGAGACCCG--CTATTAAAAAGGAAAAAAATCTATAATAATAAACGCGTGCACGAAATGAGGCAAAA
ATTAATTTCTCCACAAGAAGATACAAATAACTAGTCATA--------CTACATCTAAATCGAGAGATATTTCTCAATAAA
TCGGAAGATTAGAGCAATTACATGGCGCAAGCTATATTG-AAAATAGAAGTATCTTCTTAAAAAAAATGAGCTAAAAGCT
TCGAGGAGCCATAGGTAGAGGTGTGCATATAAAGGGAGTGCCAACTGCCAAGCCAAGAGGACCCAACACAAAGCAACCAG
GAGACGATCTGGACCCGCCGCCGCAGAAGCCAGCAACTGCCGCCGTCGCT------GTCGCCGCCGCTTCCATGGACAGC
ACGGTGGACGCAATAGTGGCGGCCTACAAGGCGCTGGTGGACGCCGCGGCGGCGGCCGCCTTCCGCGAGCCCGACCGCGA
GGCGGCGCTGCAGGAAGTGCAGCGCTGCCTGCACGCCTTCAAAGAGTCCTGCGATCGCGCCGAGGACCTCGTCCGGGCGG
CCGCCGCCACCCTCGATTTCGCGCCCGCCGCCGCCACAACCCTCGACGCACTCTGCAACACCGTGCACGGCATCGAGAAG
GACGCCCAGGCCGCCCCCGAC---GGCGGAGACGAGGAGGAGGTGCAGGATGGGAAGGGCCGCGCGCCCTCGCCGCCGGC
GGCGCCCGTGGCGGTGGCGGCCGACGATGTCTAGCCCGATCC----ATCTG---GTCACTTGTGGCTGTGATGCTAATCC
ATCCTCTTGGTTTTTTCTCTGCTGATATAGCGAGTCAC-ATGGAGCCAGAATTAATGTTGTAATGCAGATAAATTCGTGG
CATTATCTTT-CTTGAGATTGAGAGAAAACAAGAACTGATCTTGATGTTATGATCGTGATATTGCTGCGTACGTGTTGCG
CTCGGGCTCGCGGCGACCTTTTAACATGGCGAAAACAGTAGAAAAACAGGGGTACGTACAGGTTAAAAAAGGGAGTTGCA
AGTTGCTGTCGAAGCTCATCCATACGTAGAGCCTGTGGATTCGGAGGAACCGGGTAACCTCCACATACAAGAGTAAGAAG
CAA----CGAGCGAGCGAGAGATCTGATCTGACAGTGAAAACCACACATGCAGGGCAAATCCAAAGTAGGAGTAGGAC--
--------CCTCTCCTGTCA--CTCTTGTAAACGAGAGGCGGTATCGAGCAGCAGGCCTGCCGACAGAAACGACTCGATC
GCCAACAAATATC-CTGTGGCCATCCGTCCAATCATGCACACGATTCAGTTTAGGAAGTTTGTTTGATGATGGCGATATC
TGTTGTTGCCTTGTGCACAGCCCAATCGTACGGGCGCAGGTGGGGGGCAGGGGATTGCCTGGGAGTTGCAACTGCAGTGT
CATGTCAGCC-------ATG------------------------------------------------------------
--------------GTTTGCAAGGAGACCGGTAGGCCTGGTCGGCAGAGATG----TGCCTGCCTGCCTGCCAGTTGAAG
GCAAGGCTCTCCGTTGAGGT----------------GATGGTCCGAGGCAAAGCTTCTTT-TGTCATGTACTCCAGTTCG
ATCGCACAACTTACAGGAAATATCCCAAGAGGGGTTAACATCCAAACTGACAAAACAGAGAATGTCTTAT-----TTGAC
ACTGCTAGCTTCTCCATTCGACCGGTAGAT-AAAATTATGTCTTTTCATCTAACAC-------------
>chr5D_1
TATATAATAT-AAATTTTATAAAAAG-TATACAGAAATTATATTATAATAGCATGAAACAATCAAAAATT-ATAGATACA
TTTGAGACGTATCACCGTCCTCTTCAACCCCATCCTTTGCTCCAGCGAGTGCACACTGTCATACCCTCGACAGAAACTCG
CCTCCCTTTTAGTTGTTGTCACTATTGTGCTCGGATGGGGTGGAAAGTGCACCGATCGTGCAATCCAGAGAGAGATCATT
GACAACACGATCAAACACTTAAGGTCCATGTGTCACGGGGCCAGGATCAAGCAGGGCCCTCTGGCCATGAAGGGAGAAAT
ACAACTCA-GGGTAAAAGAAAAGTCAACCCAAGTGACTATTGAGATCGTTTGGCGAACACCCCGCGGCTG---AAATCAC
CAAAATTGGGGAGACCCTGAGCGTGCGAGCCTCAACCACACATCAAGTTGAAGGAGATATTGAATTATCACATTGACAGG
TATGGTTAGGTTGGAGTTGGAGCCCAATATGTGCAATGAAATTTCTAAACACACAATTCTACGTGAATGAAAAAACTAAG
GAAAAAGTACCAACTCTCCTGCCCGAGTAACGAATCACATGGTGCAAATTGCGATCTACTCTTCAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCGCCACTGGTACTCTTCAAGGCGCGATCG
AACCGGCGTCGCCACGTATCACTTGCATGAGATCCATATAGCACGTGTCACTTTCTGAGAGGTTATGTTTGCGTGGCATG
AATCCTTTCGGTGCGAGACCCCCCCTATTAAAAAG--AAAAAATCTATAATAATGAACGCGTGCATGGAATGAGGCAAGA
ATTAATTTCTCCACATGAAGATACAAATAACTAGTCATACACTCATACTACATCTAAATTGAGAGATATTTCTCAATAAA
TCGGAAGATTAGAGCAATTACATGGCACAAGCTATATTG-AAAATAGAAGTATCTTCTTAAAAAAAA-GAGCTAAAAGCT
TCGAGGAGCCGTAGGTAGAGGTGTGCATATAAAGGGAGTGCCAACTGCCAAGCCAAGAGGACCCAACACAAACCAACCAG
GAGACGATCTGGACCCGCCGCCGCAGAAGCCAGTAACTGCCGCCGTCGCCGTCGACGTCGCCGCCGCTTCCATGGACAGC
ACGGTGGACGCAATGGCGGCGGCCTACAAGGCGCTGGTGGAGGCCGCGGCGGCGGCCGCCTTGCGCGAGCCCGACCGCGA
AGCGGCGCTGCAGGAACTGCAGCGCTGCCTGCACGCCTTCAACGAGTCCTGCGACCGCGCTGAGGACCTCGTCCGGGCGG
CCGCCGCCACCCTCGATTTCGCGCCCGCCGCCGCCACAACCCTCGACGCGCTCGGCAACACCGTGCACGGCATCGAGCAG
GACGCCCAGGCCGCCCCCGACGACGACGGAGACGAGGAGGGGGTGCAGGATGGGAAGGGCCCCGCGCCCTCGCCGCCGGC
GGCGCCCGTGGCGGTGGCGGCCGATGACAACTAGCTCGATCCATCGATCTGCAGGTCTCTTGTCGCCGTGATGCTAATCC
ATCCTCTTGGTTTTTTCTTCGCTGATATAGTGAGTCATA-TGGAGCCAGAATTAATGTTGTAATGCAGATAAATTCGTCG
CATTATCTTTTCTTTAGATTGAGAGAAAACAAGAACTGATCTTGATGTTATAATCGTGATATTGCTGCGTACGTGTTGCT
CTCGTGCTCGCGGCGACCTTTTAACATGGCGAGAACAGTAGAAAAACAGGGGTACGTACAGGGC--AAATGGGAGTTGCA
AGTTGCTGCCAAAGTTCGTCCGTACGTAGAGCCTGTGGATTCGGAGGAACCGGATAACCTCCACATACAAGAATAAGAAG
CAGCGATCGAGCGAGTGAGAGATCTGATCTGACAGTGAAAACCACACATGCAGGGCAAATCCAAAGTAGGAGTAGGACGA
GCCCCGGCCCTGTCCTGTCA--CTCTTGTAAACGAGAGGCGGTATCGAGCAGCAGGCCTGCCGACAGAAACAAGTCGATC
GCCAACAAATATCACTGTGGCCATCCATCCAATCATGCACACGATTCAGTTTAGGAAGTTTGTCTGACGATGGCGATATC
TGTTGTTGCCTTGTGCACAGCCCAATCGTACGGACGCAGGTGGATGG-AGGGGATTGCCTGGGAGTTGCAACTGCAGTGT
CATGTCAGCTTGGGGTTATG------------------------------------------------------------
--------------GTTTGCAAGGAGACCGGTAGGCCTAGTCGGCAGAGATGTGCCTGCCTGCCTGCCTGCCAGTTGAAG
GCAAGGCTCTCCGTTAAGGTGACAGTGACGCTACAGGATGGTCCGACGCAAAGCCTTTTTGTGTCCTGCACTCCAGTTCC
ATCGCACAACTCACAGGAAATATCCCAAGAGAGGTTAACATCCAAACTGACAAAACAGAGAATGTCTTATCTTATTTGAC
ACTGCTAGCTTCTCTATTCGAC-GGTGGAT-AAAATTATGTCTTTTCTATCTAACACGGATTCTAAA--
>SNPs
-------------------------SS------------S--------------S-------------------------
--S--------------------------S---------------------------S--------------------S-
---------------S-------------------------------S--------------------------------
------------------S-------------------------------------------------S----S-S----
S--------------------S-----------------S------------------------S---------------
---------------------------------SS-----------------------------------SS--------
------S----------------S-------------S------S-----------------------------------
---------------S-SS-----------------------------S-------------------------------
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--------------------------S-----------------------------------------------S-----
-------------------------------------------------S------------------------------
--------------SS----------------------S-----------------------------------------
---S-------------------S-------------SSS-------------------S--------------------
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----------------------S-----S---------------------------------------------------
-------------------------------------------------------S------------------------
-----------S--------------------------------------------------------------------
--------------------------------------S---------------------------S-------------
-------------S------------------------------------------------------------------
-------------S-----------------------------------------------------------------S
---S------------------------------S----------------------------------S----------
---S---------------------------------------------S-----------------------------S
--------------------------------------------------S------S----------------------
S---------------------------S---------------------------------------------S-----
-----------------------------------------------------------------------SS--SS---
-----------S--------SS--------------------S-------------------------------------
-----------------------------------------------------------------------S--------
S---------S-S--------------------------------------------SS----S----------------
---------------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--------------------------------S---------------------------------
-----------------------------------S--------------------------------------------
----------------------S---------------------------------------------------------
------------------------------S----------S---S-----------S---------SS
>forward_609
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-----------------------------ATGAATCACGCGGTGCAAAC-------------------------------
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>reverse_2313
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------------------------------------------------------------------------GAGCCCCC
TATCCTGTCACT--------------------------------------------------------------------
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