>input_sequence_79048
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
ATGAAGCGCAACCCCCGCGTCACGAGCTCCCGCCGGAAGTGCCGCAAGGCGCACTTCACGGCGCCGTCCTCCGTCCGCCG
CGTGCTCATGTCCGCGGCCCTCTCCTCCGAGCTCCGCCACAAATATAACGTCCGCTCCATCCCGATCCGCAAGGACGACG
AGGTGCAGGTCGTGCGCGGCACCTACAAGGGCCGCGAGGGAAAGGTGGTGCAGGTCTACCGCCGCCGCTGGGTCATCCAC
GTGGAGCGGATCACCAGGGAGAAGGTCAATGGATCCACGGTGAACGTCGGCATCCACCCCAGCAAGGTGATCGTCACCAA
GCTCAAGCTCGACAAGGACCGCAAGGCCCTCCTCGACCGCAAGGCTCGCGGCCGCGCTGCTGACAAGGCCAAGGGAAAGT
TCACGGCGGAGGACGTCGCCGCCGCCGCTGGGGGCGCCACGGCCACCGGTGCCTCGCTCCAGGAGATCGATTAA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G140800
CTGATGTATAAAAAATATACAATAATGCTGATACAAGCTTGACGTAAACCAATGGCTTAACTTTGATTTTCATATTGTTT
CAAATTGTTTTCATAATGATTTTACATTTGGCATGCATGTCCTTACAAATTGGTTGTTTTCGATGGAGCTGTCTAATATG
TTTACAACCAAATTAAGACTTCACTTGGATTACAAATGCAAACACATATATCATCAAGATAAAAATGATGCTCTTATGCA
TATGCTATCATTAATTAATAAAATGTACTTTGCTATTTTCATCGTAATGCAAATATTTGTTGGGCATCACCGAGGAGGAA
CGGCAATAAATGTGTAAAGAGATACCCGCAGCGAGGTAGATATTTCCATTGTCTAATAAATTCAAAACAACTTGAGTACA
CTTTAAAAATTATCACATCTCTATGTTTTTGCGTAACACCACTTA---------TCATGTTGTTTTTCATGTGGCGTCGT
GCAAGATTTCAAGAGATTTATTAATGTCTCGAGAGTGTGTATGAGGGGTAATTTTTTTCTTCCGTTGCAACGCCTGGACA
TGTTTTTTTGTGTGTGTGGTTGATGTTTGCTAGTAATTATAATATGTGAAAGCAGGAGCTAAAATAAAAGAAAGCCCCGC
CTTGGCTAGAGCTAAAAGGAAGAAGGGCTTCC------------------------------GGCCAGCAGATCCACATT
CTCCTCAAGACAAACCACTGGTCGGCCCGACTTGTTTTGTAAGCCCAGAGAGGTCCTCAAATTAGTCCAGAGAAACAAGT
AACATCGGCCCAGCTAGCCCAACCACCCATTCCGCCGAACGAATCCTCGCCGTCCACTCCCCATCGAACGCCTTGGCGCG
CCCACGCGACGGAGCGCAGATAAAACCCTAGTAGCATGCCACCTATATATTCCCCTCCCACCGCAACAGCCCGCCGCCTC
CACACACTCC-TCCCGCCCCAGAACCCTAGCCGCCGCCGACGCCCCAGGTAAGGGAGAGAGCCCACCCCCCGCTGCCGCC
ATGAAGCGCAACCCCCGCGTCACGAGCTCCCGCCGGAAGTGCCGCAAGGCGCACTTCACGGCGCCGTCCTCCGTCCGCCG
CGTGCTCATGTCCGCGGCCCTCTCCTCCGAGCTCCGCCACAAATATAACGTCCGCTCCATCCCGATCCGCAAGGACGACG
AGGTGCAGGTCGTGCGCGGCACCTACAAGGGCCGCGAGGGAAAGGTGGTGCAGGTCTACCGCCGCCGCTGGGTCATCCAC
GTGGAGCGGATCACCAGGGAGAAGGTCAATGGATCCACGGTGAACGTCGGCATCCACCCCAGCAAGGTGATCGTCACCAA
GCTCAAGCTCGACAAGGACCGCAAGGCCCTCCTCGACCGCAAGGCTCGCGGCCGCGCTGCTGACAAGGCCAAGGGAAAGT
TCACGGCGGAGGACGTCGCCGCCGCCGCTGGGGGCGCCACGGCCACCGGTGCCTCGCTCCAGGAGATCGATTAAGC-TTG
-GGATCTGCCGGTTGCCATACTGCTCTTGATATCCTAGTTTTATTACCATCACCAGTTCTGTTAGGATATGCTATCTGAA
GA---CTGCTTTATTATTCGTATGATGTCG-TGGATGAGCGTTTTCAAAC----CTTTAATGTGCATCTTTATGGGTCTG
TGCC--TTGGATTTTGATATGAAGACTTCATTATATGTTTAATATCTGGTTCTTTGTTTGTCGTTTAGATCTGATTAATG
TTATTAAGT---T--TATCTGTGTGCACCTCTAGAGGTTAAATTGACCATCTGTTAGTTCTCAGGTTAGACTAATCCTTG
CCGAGTGTTAGTTCATTACCGTAGTTGCTGTTTTGTGATGTTTATGTGATATGCTCTGTATCGGTTTGCTAGATCATACT
AGATGTTCTGTGTAGTTTTTGGTCAGCCATAGTTAAATATCTGCAAGGGAAATGTTAAACTTGTGGAAGTTACTTGCACA
ATGGATGGTGAATTCATCCTGTTTTCATG-GGCAGTTGCAATGCACCATCTCTGTTTCTAATAGCAGTCTGGATCCTGCG
TTTCGTCCTTCTCTGGTCAGTTTGCATTAGTTTTAGCAAGAAATTTCAGGCTCGTTGAAAAGAAATTTATAACCACCATA
GTTT-----------------------------------TTCAGATAATTTTGCGTGTGTTGCCCTTGATTTTAGGAGGA
CATTCAAAGATACATGGTCGGGTTTTGCTTTGTTTTTTCGGTTTTGTCTGTGATGGTAG---------------------
-------TTTCTGTCGCTCTACCTGGAGCTTCTTCTGTTGAAATGTTATACAATG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
ATGAATCGGTGTCTGTTGCTCTACCCCGGGCTTCTTCTGCCAATGAATGAGTGTCTGTTGCTCCACTCGGGGCTTATTCT
GCTGAAATGTTATACAATCAATTGAGTGCGCTCGGGCTTTTGGTGCATTCTTTTCCATGATCATCCTTCCAAGATTGTC-
----------------TGAATTTTGTCCATTCGTCAAATTCTCTGCTTAACATCAAACAGAAGCATCCCTTACCGTT
>chr3B_1
CTGATGTATAAAAAATATACAATGTTGCTGATACAAGCTTGACGTAAACAAATGGCTTAACTTTGATTTTCATATTGTTT
CAAATTATTTTCGTAATGATGTTGCATTTGGTATGCATATCCTTACAAATTGATTGTTTTTGATGGAGCTGTCTAATATG
TTTGCAACCAAATTAAGACTTCACTTGGATTACAAATGCAAACACATATACCAACAAGACAAAAATAGTGCTCTTATGCA
TATGCTATCATTAATTAATAAAACGTACTTCGCTATTTTCTTCGTAATGCAAATATTTGTTGGGCGTCACCGATGAGGAA
CGACAACAAATGCGGAAAGAGATACCTGCAGCTAGGTAGATATTTTTATTGTCTAATAAATTGG-AATACCTTGAGTATA
CTTGGAAAATTATCACATCTCTATGTTTTTGCGCAACACCACTTATCATATTTATCATGTTGTTTTTCATGTGGCATCGT
GCAAGATTCCAAGAGATTTATTGATGTCTCGAGAGTGTGTATGAGAGGTAAGTTTTTTTTTCCATTACAGCGTATGGGC-
----------------------ATGTTTGCTAGTAATTACAATATGTGAAAGCAGGAGCTAAAATAAAAGGAAGCCCCGC
CTTGGCTAGAGAGACATCACGGTTTTCCTCGACGCAGCCGACTAGGCTTTAGTGTTTACACGGGCCAGCAGATCAGCATT
CGGTCGGACCTT------------------CTTGTTTTCTAAGCCCAGAGCGGTACTCAAATTAGTCCAGAGAAACAAGT
AACATCGGCCCAGCTAGCCCAGCCACCCATTCCGCCGAACGAATCCACGCCGTCCAGTCCCCATCGAACGCCTTGGCGCG
CCCACGCGACGGAGCGCAGATAAAACCCTAGTAGCATGCCACCTATATATTCCCCTCCCACCGCAACAGCCCGCCGCCTC
CACACACTCC-TCCCGCCCCAGAACCCTAG---CCGCCGTCGCCCCAGGTAAGGGAGAGAGCCTACCCCCCGCCGCCGCC
ATGAAGCGCAACCCCCGCGTCACGAGCTCCCGCCGGAAGTGCCGCAAGGCGCACTTCACGGCGCCGTCCTCCGTCCGCCG
CGTGCTCATGTCCGCGGCCCTCTCCTCCGAGCTCAGGCACAAATACAATGTGCGCTCGATCCCCATCCGCAAGGATGACG
AGGTGCAGGTCGTGCGCGGCACCTACAAGGGCCGCGAGGGAAAGGTGGTGCAGGTGTACCGCCGCCGCTGGGTCATCCAC
GTGGAGCGGATCACCAGGGAGAAGGTCAATGGATCCACGGTGAACGTCGGCATCCACCCCAGCAAGGTGATCGTCACCAA
GCTCAAGCTCGACAAGGACCGCAAGGCGCTCCTCGACCGCAAGGCTCGCGGCCGCGCTGCTGACAAGGCCAAGGGCAAGT
TCACGGCGGAGGACGTCGCCGCCGCCGCTGGAGGCGCCACGGCCGCCGGTGCCTCGCTCCAGGAGATCGATTAAGCTTTG
-GGATCTGCCGGTTGCCATACTGCTCTTGATATCCTAGTTTTATTACCACCGCCTGTTCTGTTAGGATATGCAC------
---TGCTACTTTATCATTCGTAAGATGTCCCTGGATGAGTGTTTGGAACC----TTT--ATGTGCATCTATCATGGGTC-
TGCC--TTGGATTTTGATATGAAGACTTCATTATATGTTTAATATCTGGTTCTTTGTTTCTCGTTTAGATCTGATTAATG
TTGTTATTATGGT--TATCTGTGTGCACCTATAGAAGTTTCGCTCACCATCCGTTAGCTCTCAGGTTAGGT---------
----GTGTTAGTTCATTACCGTAGGTGCTGTTTTGTGATGAATATGTGCTAGTAATTTAAAGTAGATGGCACAGA-----
-----------GTAGTTTTTGC-CATCCATAGATAAACATGCGTAATGGAAATGGTAAGCTAGTGGAAGCTA-TTGCCCA
GTGGATG----ATTCATCTTGTTTTCATA-GGCAGCTGCAATTCGCCATCTTTGTTTCTAATAGCAATCAGGATCCTGTG
TTTCCTGCTTACATGATCGGTTTTCATTAGTTTTAGCTAGAAATTACAGGATCATCATAAATAACTTTATAACCAC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>chr3A_745
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------AGCCCGGAGAAACAAGT
AACATCGGCCCAACTAGCCCAACCACCCATTCCGGCGAGCGAATCCACGCCGTCCACTCCCGATCGAACGCCCTGACGCG
CCCACGCGACGGACCGCAAAT-AAACCCTAGTAGCACACCACCTATATATTCCCCTCCCATCGCCACATCCGGCCGCCTC
CACACACTCCCTCCCGCCGCAAAACCCTAG---CCGCCGCCGCCCCAGGTAAGGGAGAGAGCCCACCCCACGCCGCCGCC
ATGAAGCGCAACCCCCGCGTCACGAGCTCCCGCCGGAAGTGCCGCAAGGCGCACTTCACGGCGCCGTCCTCCGTCCGCCG
CGTGCTCATGTCCGCGGCCCTCTCCTCTGAGCTCCGCCACAAATACAATGTCCGGTCCATCCCCATCCGCAAGGATGACG
AGGTGCAGGTCGTGCGCGGCACCTTCAAGGGCCGCGAGGGAAAGGTGGTGCAGGTCTACCGCCGCCGCTGGGTCATCCAC
GTGGAGCGGATCACCAGGGAGAAGGTCAATGGATCCACGGTGAACGTTGGCATCCACCCCAGCAAGGTGATCGTCACCAA
GCTCAAGCTCGACAAGGACCGCAAGGCCCTCCTCGACCGCAAGGCTCGCGGCCGCGCTGCTGACAAGGCCAAGGGCAAGT
TCACGGCCGAGGACGTCGCCGCCGCCGCTGGGGGTGCCACGGCCACCGGCGCCTCGCTCCAGGAGATCGATTAAGCTCGG
TGGATCTGCCGGTTGCCATACTGCTCTTGCTATCCTAGTTTT-TTAATATCACCAGTCCTGTTAGGATATGCTACCTGAA
ATATGCTCCTTTATCATTCGTAAGATGTTCGATGGTGACGTTTGGGAACCTTTATTA--ATGTGAATCTATCATGTGGC-
TGTGCGTTGGATTTTGATATAAAGTCTTCGTTATATGTTTAATATCTGGTTCGTTGTTTGTCGTTTAGATCTGGTTCATG
TTATTATGTTCTCTCTACCTGTGTGCACCTGTAGAGATTAAAATCACCACCCGTTAGTTCTCAGGTTAGACTGATCCTTG
TCTAGTGTTAGTTCATTGTGGTAGTTGCTCTTTCGTTGTGTTTATGTG---TGCTCTGTATCGATTTGCTAGATCATACT
AGATGGTCTGTAGTTTTTA--GTCAGCCATAGTTAAATATCTGCAAGGGAAATGTTAAGCTACTGCAAGTTACTTGCACA
ATTGATGGTGAATTCTTCCTGCTTTTAATAGGCAATTGCGATGCACCATTTGTGTTTCTAATAGCAGTCAGGA-------
-----TCCTTCTCTGGTCAGGTTGCATTAGTTTTAGCAAGAAATTTCAGGTTCATTGAAAAGAAATTTATAACCACCCTA
GTATTTGCCTACATTTGACTAGTCTTCTGATTCGAGTGATTCAGATAACTGTGCGTGTGTGGCCCTTGAATTTATTAGGA
CATTCAAAGGAACATGGTTGGGTGTTGCTTTGTTTTTTTGGGCGTGTTTGCTGGTAGTTTCTGTTGAAATGTTACGCAAT
GGATCATTTTCTGTTCCTCTACTTGGGGCTTCTTCTGCTGAAATGTTGGGGCTGTTTGGTTCTAGGACTAGTATTGCCAT
ACTTTGCCACACATTTTTGCCAAACTTGCCTAAGGTTAGTTCATCAAAATGAGAGCCACAAGTTGGCAAGCCTAAGGGAA
TCTTGCCACACTTTTTGTGTGTATGCCATGTGGGACCCAAGTGTGGCTTGTCTAAGGTGTGGCTTGAACCAAACACTCAT
CTAAGTTGGTCAAACTTGCCTAACCTTAGGTGTGGCAATCTTTGGCAAAGTTAGTCACAAACCAAACAGCCCGTTATGCA
ATGAATCATTTTCTGTTCCTCTACTTGGGGCTTCTTCTG---------------------------------------CT
GCTGAAATCTTATACAATGAATTGAGTGCTCA--GGCTTTTGCTGCATTCTTTTCCATGAACATCCCTCCAAGAGTGTCC
TATATTCATGGCAACATGAATTTTGTCCATTCGTCAAATTCTCTGCTTATCATCAAACAGAAGCATCCCTT------
>SNPs
-----------------------SS------------------------S------------------------------
------S-----S-------S--S-------S------S-------------S-------S-------------------
---S----------------------------------------------S--S-----S------SS------------
-----------------------S------S---------S------------------------S-------S------
--S---S-----S-S-----------S-----S------------SS---------------SSS--S-S--------S-
---SS----------------------------S-----------------------------------------S----
--------S-------------S----------------------S-----S------S----S--S--S--SS---S-S
SSSSSSSSSSSSSSSSSSSSSS-----------------S------------------------------S---------
-----------SS-S-SSSSS-SSSSS--SSS------------------------------------------SS----
-SSSSSS-SSSSSSSSSSSSSSSSSSSSSS--------S-----------S---S-------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
------------------------------SSS------S---------------------------------S------
--------------------------------------------------------------------------------
---------------------------------------------S--S--------------S-----------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
SS-----S------S-------S------S---------S----SS--S-----S--SS----------S-SSS--SSSS
--------------------------------------------------------------------------------
------S-----------------------S-----------S-S------S--------------------S-------
S-S---------------------------------------------S--------------S----------------
-----S----------------------------------------------------S--S------------------
----------------------------S----------------------S-----------------S--------S-
----S---------------------------------------------S--S-----------------------S--
--S---------------------------------------------S-S---------S--------S----SS----
---------SS-------S----S--------------S--SSS---S--SSSSSSSSS---------------------
--------------SS------S---S----------S---------SSSSSSSS-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------SS-S------S------SSS------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--------S---------S----------S-SSS--------S-----------------S-----S-------S-----
-------------------------------------------------S---------------------SSSSSS
>forward_566
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GCAACGCCTGGACA
TGTTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_2690
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AGTGTCTGTTGCTCCACTCG-----------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
