>input_sequence_79038
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---------------------------ATGGCCGACAAGGAGGAGTTTGCGCTGAAGCCCTGCACCGCCACCAATTCAAG
GGCGGGCGGATCAGGAGCTTCGATGGCCCCAGATGGTTTCTCGGAGGCGTTCCATGGAGAGCAAACTGGAGCCAAGAGGA
AGGGGCGGAAGCGGAGGGCCGGTTGCAAGGGGTCTGCCACGAAGACGAAGGGAGAGGAGACGGCTGACCAGACCGCGATG
ACCAAGATGGCT------------GCTCTGGCTGAGAAGGCGACGATGCCGGTGGCGGCTGACGAGACGGCAGAGAAGC-
-----------------------AGGA------GCAGGAGGAGGACTTTGACAAGATCCTTGAAAAGGCCAAAGCAGAAT
ACGCTCAGCTTATGGACAATCTGTTTGGTGGTGGCCAGCCAAAGGTGAAGTGGGTGAGGTATCCCTCGTACATGTCGTAT
CCAGGTATGGAGGCCG--ACATGGAGGCTGATGGTCTCAAATTTGATGAGGAGGTTGAGCGATAA---------------
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>chr2B_1_TraesCS2B01G444300
TTTTTCGAGTTGCTGGTAGCACTTTGTCGGGTCTTTGAGGCCATGAGTTCGACCCTTCAACTCGTATATTTTGGGGGGAT
TTTTACTCGCGTCTTACAAACATAGGTCATTTTGGTGCCTGGGCCTTTCACAGCCCACGCAACTAAGCCGTCCCAACTAC
CTGGGAAATAAGTCAAATT-TATTTTAAATAGTCCCACATTGCTC--CTTTACATACAGTCATACCAAATTATATATGTG
CGTGG--AACTACATGTAGTAAGATGGATGGACTAAGTTGCATGAAGGATGGATGGATTGGTACGGGAGCTAGCTGAAAA
AGGACCCTGAATTTCTTGAAGATTGCTACCCAAAGAAA----------------------AAAGAAGAGAAGACTCGCCT
CACTTCAATATTATTGAACTTCATACCTTAAAACCCCTCGAACGATGAAAAAGTAGATTGAATAATTCACGGACCTTGTC
TGGAGTGCAATGACCTAACAAAACCCAGTACTTAAATGTTCAAACTTCGTACCTGCAATCCCCTCGGTCAATGAACAGAA
AAATAGAGAATTGATTATTTCACACGTGGCAAAACCTATCTAAATGCTCCTTCTCGCAATGTGGA---------------
--AAATAATTCACACCAAATTTAATACACACTATTTTTTT-TCCTCTTACAACGCACGATATACATACTACTCCCTCTGT
CCCATAATGTAAGAT-----------------------------------------------------------------
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---------------------------GTTTTCGCAAGGTAACGCTTAGCCCGAGTTGGGCCTGGTGTTTGTTTTTCTTG
TTGCTTTGG----TGGAGTTAGGCCGAAGAAACAAGAAAGCGGCCGCCTAGCCCGAGAGTGAATCCGGCCCGGGCAGGAA
TTGTGATA-TATACCGACTCCGAATAGAACTAGGGCCTAGGGTTCTGCCTTTTTATCGAGCGAGCCGCAGTCCCCCCTCT
TTGTCCTCTTGGAGAAAAATCCCCAAATCC-----AGGCAACCTGCGATTCCACCCGAAAACCAAATTCCTCGGCGAGTT
GAGGTGCGGCAGATCAGGGATCCGCTCATGGCCGACAAGGAGGAGTTTGCGCTGAAGCCCTGCACCGCCACCAATTCAAG
GGCGGGCGGATCAGGAGCTTCGATGGCCCCAGATGGTTTCTCGGAGGCGTTCCATGGAGAGCAAACTGGAGCCAAGAGGA
AGGGGCGGAAGCGGAGGGCCGGTTGCAAGGGGTCTGCCACGAAGACGAAGGGAGAGGAGACGGCTGACCAGACCGCGATG
ACCAAGATGGCT------------GCTCTGGCTGAGAAGGCGACGATGCCGGTGGCGGCTGACGAGACGGCAGAGAAGC-
-----------------------AGGA------GCAGGAGGAGGACTTTGACAAGATCCTTGAAAAGGCCAAAGCAGAAT
ACGCTCAGCTTATGGACAATCTGTTTGGTGGTGGCCAGCCAAAGGTGAAGTGGGTGAGGTATCCCTCGTACATGTCGTAT
CCAGGTATGGAGGCCG--ACATGGAGGCTGATGGTCTCAAATTTGATGAGGAGGTTGAGCGATAATGAGGTTGCTCTGGC
ATATACTTCCTCCGTTTCTAAATACTTCCTTCGTCCCAAAATATTTGTCTAGATACAAATGTATCTAATATTAAAACATG
ACTTGATACATGTGTATCTAAACAAATTTAAGACAAAAATTCTGAAACGGAGTGAGTATAAGTTTTTTTAGAGATTGCAC
TACAAACTACATACGGACGGACGTATATAAATATATTTTAGAGTGTAAATTCACTCATTTTATTTCGTATGTACTCCCTC
CGTCCAGAAATATTTGTCATCAAAATGAATAAAAGAGGGTGTATCTAGATGTATTTTAGTTCTAGATACATCATTTTTTG
TCCATTTTGATGACAACTATTTTCGGACGGAGGGAGTAGTTCATATTTCAACCTCTAAAATGACTTATATTTAGGAATGG
AGGGAGTATATCCATCTAATGTACGGAACCATTCTCCTAAAGGTCATAACTTGTAGTCCATTGATTGACCCCGTAAGAGC
ATCTCCAGCTACGCCCCAGAATGGCCTCCCCAGGTGAATTTTTTGCGCCGGCGTTGAAAAAACAGCCCGCTGGGGAGCGC
CGGGGCAAGTGATTTTTGCGCGAAGCAGCCGCGGGCCCGCCGAGTCAGCGAGACGGGCGCTTCGTCGCCCTCATCGCCTC
GGTTTCTGTGAGAATTAATGCCAAGGCTGCCGCTGCCGGTCAGCCTTGTCATTGATTCCTCACGGGCGGCGCGTCACGGG
GCGGCGCGGCGACGCCTCCCCTCTCGCCACGCGTACACACGGGCGCGGCTATATAAGCCGGTGGCCTCCCTCGCCTCTGG
CCACACCAGCCCTAGCCGCCGAGCTCTCCCTCTCCAGTGCGCCGCCGCCGAGCCCTCCCTCTCCCTCTCCCGTGCGCCGC
CGTCGAGCCCTCCCTCACTCCGACACCCGATGGCCGCACGTTTCCCCGGTGCCGCGGCGGCGGCCAACGTCTCCGGCCGC
CGCTCGCTCCACGAACAGGAGTCGT
>chr2D_1
TTTTTCAAGTTGCTGGCAGCACTTTGTCGGGTCTTTGAGGTCGTGAGTTCGACCCTTCAATTCGT-TTTTCTTT--GGAT
TTTTACTCGCGTCTTACAAACATAGGTCGTTTTGGTGCCTGGGCCTTTCACAACCCACGCAACTTAGTCGTCCCAACTAC
CTGGGAGATAAGGCAAATT-TATTTTAAATAGTCCCACGTTGCTC--CTTTACATACAGTCATACCAAATTATATATGTG
TGTGG--AACTACATGTAGTAAGGTGGATGGACTAAGCGGGATGAAGGATGGATGGATTGGTACGGGAGCTAGCTGAAAA
AGGACCCTGAATTTCTTGAAGATTGCTACCCGAGGAAA----------------------AAA-AAGAGAAGACTCGCCT
CACTTCAATATTATTTAACTTCATACCTTAAAACCCCTCGAATGATGAAAAAATAGATTGAATAACTCGCGGACCTTCTC
TGGAGTGCAATGACCTAACAAAACCCAGTACTTAAATGTTCAAACTTTGTACCTGCAATCCCCTTGGTCAATGAACGAAA
AACTAGCGGATTGATTATTTCACACGTGGCAAAACCTACCTAAATGTTCCTTCTCGGTGTGCACACAGGGTTATACTTGA
ATAAATAATTCACACCAAATTTAATACACACTATTTTTTTCTCCTCTTACAATGCACGGTATACATACTACTCCCTCCGT
CCCATAATGTAAGATATTTTCGCAGGGAGCAACTAGTTAACGAGCGCTCCTTCGGGAGCCTCGCAACGATCAGCGCCACT
TGGCGCGCTCTCAGCCATTCGCCACGTGTCGCGCTCTGGACGCTCCCTTCGGATTTTGTTTTTTTATTTTTTCGCACGCG
TTTTCGGCTTTTTAAATTGGTTTTTTCGACGTTTTGGTTTTCCCCCGGTCTTTCTTAGCTTTTCGATAAAAAAAAAATTT
CGAAATTTTTTTTTGCGCGAAAAAACGCGTTTTTTTTCTTTTCGCGAAAGTCACGGTTTTTCTTCCGCAAGAGGCACGGT
TGTGCTTTATCGAGAGTCACGGCCGTGCCTTTCGGAAACGAAAAAACGCGTTTTCTGTTTTTTTTTCTTTCGCGAGAGTC
ACGGTTTTACTTCCGCGAGAGGCACGGTTGTGCTTTCGCGAGAGTCACGGTCGTGCCTCTCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTTGCTTCCGCGAGAGGCACGGTTGTGCTTACGCGAAAGTCACGGCCGTGCCTCTCGAAAAGGGAAAAAAATACGTGTTT
TCTGTTTTTTTTTTCTTTCGCGAGAGTCACGGTTTTGCTTTCGCGAGAGGCACGGTTGTGCTTTCGTGAGAGTCACGGCC
GTGCCTCTCGAAAACGGAAAAAAACGCGTTTTCTGTTTTTTTTTTTCCACGAGAGTCACGGTTTTGCTTCCACGAGAGGC
ACGGTTGTGATTTCGCGAGAGGCACGGGCGTGTCTCTTTCGGAAAGGGAAAAAACCGTGCTCCCGATTCGGTTTTTTCGC
CCGGTTTTTTTCGTCCGGTTTTTTTTTTGAAAAAAAGTTCGTCAAAACCTATCAAATGGGATCTAGTTTTGAAGATCTCG
ACGCGAGGAATCCAATGGTGAAAACGGTTCGAGATTTGGACGCACGGTTTAAGAGATAAAACGTTTTGAATAAACGGATC
TACGAAAACCTGGTTGCGACAAGTGGTGCGCTGCATGTGCGCCACTTGTCGCGATCTGGGAAAGTGGAGTGTTCTTTGCA
ACGAGTACTCCTTAATTAGTGATTTCGGTTTTCGCAAGGTAACCCTTAGCCCGCTTTGGGCCTGGGCCCTGGAGTTCGAT
TTCCTTCTCTGGTTGGAGTTGGGCCAAAGAAGCAAGAAAGTGG-------------------------------------
-------------CCGACTCCGAACAGAACTA-GGCCTAGGGTTCCGCCTTTATATCGAGCGAGCCGCAGTGCCC-----
----CCTCTTCGAGAAAAATCCCCACATCCAGGCGAGGCAACCTGCGATTCCACCCGAAAGCCAAATTCCTCGGCGAGTT
GAGGTGCGGCGAATCAGGGGTCAGCTCATGGCCGACAAGAAGCAGTTTTCGCTGAAGATCTGCACCGCCACCAATTCAAG
GGCGGGCGGATCAGGAGTTTCGATGGCCCCAGATGGTTTCTTGGAGGCGTTCCTTGGAGAGCAAACTGCGGCCAAAAGGA
AGGCGCGGAAGCGGAGGGCCGGTCGCAAGGGGTCTGCCATGAAAACGAAGGGAGAGGGGACGGCGGATCAGACAACAGTC
GTCGA---------------------------------------GAAGCCGGTGGCGGTAGACGCGCCAGCGGAGC----
--------------------------------AGCAGGAGGAGGACTTGGATAAGCTCTATGAAAAGGCCAAAGCAGAAT
ACGCAAAACTTTTTGAGAAGGTGTCTGCTCATGATCCGCCAATTGTGAAGTGGGTGAAATATCCATCGTACATGTCGTAT
CCAGGTATGGAGTTTG--ACATGAAGGCTGATGGGCTCCAATTTGATGAGGAGGGTAAGCGATGATGAGGTTGCTCT---
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>chr7A_15
GGCAGT--------------ACTTAGTCAAGTCTTTCAGGTCATGAGTTCAATCCTTCAACTCGTCTTTTTTTT--GTAT
TTTTACTCGCGCCTTACAAAGACAAGTC-TTTCGGTGCCTGGGCCTTTCACAGCCCACGCAACTTAGCCAACCCAACTAC
CTGGGAAACAAGGCAAAACATATTTTAAATAGTCTCACATTGCTATACTTTACATGCAGTTGTACCAATTTATATGCGTG
TGTGCGAAACTACATGTAGTAAGCA--------------GGATGAAGGATGGACAGACTAGTACATGAGCTAGCTGGAAA
A-GACCCTGAATTTCTTTTAAAAAAGAAAAGAAAACCCGACTAAGTGAGCTAGATACATGAAA-AAGAGAAGACCCGCCT
C--TTCCATATTATGGAACTTCGTGCCTTCAATCCCC-------ATGGGAAAACGGATTGCATAACTTGCGGGCATTCTC
TGACATGTGATGACCTAACAAAACCCAAGACCTAAATGTTCAAACATCATACCTTAATTCTTCTCGATCAGTAAACGGAA
CAATAGCGGATTGATTACTTCAGACGTGGC--------------------------------------------------
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>chr2D_700
AGGAA---------------------------------------------------------------------------
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------------------------------------------CGCCTGGCCAGAGTTGGTCCTAGTGCTCGTTTTTCTTC
TTGCTTTGG----TGGAATTGGGCCAAAGAAACAAGAAAGTGTCGGCCTAGCCCGAGCGGGAATCCGGCCCGGGGAGGAA
TTGTGATACTATACCGACTCCGAATAGAACTAGGGCCTAGGGTTCCGCCTTTATATCGAGCGAGCCGCA-TCCCCCCTCT
TCGTCCTCTTCGAGAAAAATCCCCAAATCC-----AGGCAACCTGCGATTCCACCCGAAAGCCAAATTCCTCGGCGAGTT
GAGGTGCGGCGAATCAGGGGTCAGCTCATGGACAACAAGAAGGAGTTTTCGCTAAAGACCTGCACCGCCACCAATTCAAT
GGCGGGCGGATCAGAAGTTTCGATGGCACCAGATGGTTTCTCGGAGGCGTTCCTTGCAGAGCAAACTACAGCCAAAAGGA
AGGCGTGGAAGCGGAGGGCCGGTCGCAAGGGGTCTGCCATGAAAACGAAGGGAGAGGGGACAGCGGATCAGA--------
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>chr2D_858
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---------------------------------------GGGTTCCGCCTTTATATCGAGCGAGCCGTAGTCCCCCCTCT
TCG-CCTCTTCGAGAAAAATCCCCAAATCT-----AGGCAACCTGCGATTCCACCCGAAAGCCAAATTCCTCGGCGAGTT
GAGGTGCGGCGAATCAGGGGTCCGCTCATGGCCGACAAGGAGGAGTTTTCGCTGAAGACCTGCACCGCCACCAATTCAAG
GGCGGGCGGATCAGGAGCTTTGATGGCCCCAGATGGTTTCTCAGAGGCGTTCCTTGGAGAGCAAACTGGAGCCAAGAGGA
AGGGGCGGAAGCGGAGGGACGGTCACAAGGGGTCTGCCGCGAAGACGAAGGGAGAGGAGACGGCTGACCAGACCGCGATG
ACCAAGATGGCT------------GCTCTGGCTGAGAAGGCGACGATGCCGGTGGCGGCTGACGAGACGGTAGAGAAGC-
-----------------------AGGAGCAGGAGCAGGAGGAGGACTTTGACAAGATCCTTGAAAAGGCCAAA-CAGAAT
ACGCTCAGCTTATGGACAATCTGTTTGGTGGTGGCCAGCCAAAGGTGAAGTGGGTGAGGTATCCCTCGTACATGTCGTAT
CCAGGTATGGAGGCCG--ACATGGATGCTGATGGTTTCAAATTTGATGAGGAGGTTGAGCGATGATGAGGTTGCTCTGGT
ATATATATCCTGCG------------------------------------------------------------------
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>chr2B_901
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--GTCCTCTTGGAGAAAAATCCCCAAATCC-----AGGCAACCTGCGATTCCACCCGAAAGCCAAATTCCTCGGCGAGTT
GAGGTGCAGCGAATCAGGGATCCGCTCATGGCCGACAAGAAGGAGTTTTCGTTGAAGCCCTGCACCTCCACCTATTCAAG
GGCAGGCGGATCAGGAGTTTCGATGGCCCCAGATGGTCTCTCGGAGGCGTTCCTTAGAGAGCAAACTGCAGCCAAAAGGA
AGGCGCGGAAGCGGAGGGTCGGTCGCAAGGGGTCTGCCATGAAAACGAAGGGAGAGGGGACGGCCAATCAGACAGCAGTC
GCCGA---------------------------------------GAAGCCGGTGGCGGCAGACGCGACGGCGGAGCAGA-
-----------------------AGGAGA---------AGGAGGACTTCGACAAGCTCTATGAAGAGGCCAAAGCAGAGT
ACGCGCAACTTATGGACGAGCTGTTGGGTACTGACCCGCCAATTGTGAAGTTGGTGAAATATCCCTCGTGTATGTGGTAT
CCAGGTATCGAGGAGGACA--TGAAGGCTGATGGTCTCAAATTTGGTGAGGAGGTTGAGAGATGATGAGG---CTCTGGT
ATATA---------------------------------------------------------------------------
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>chr2A_1002
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----------------------------TGGCCGAC---AAGGAGTTTTCGCTGAAGCCCTGCACCACCA----------
GGCGGGCGGATCAGGAGCTTCGATGGCCCCAGATGGTTTCTCGGAGGCGTTCCTTGAAGAGCAAACTGGATCCAAGAGGA
AGGCGCGGAGGCGGAGGGCCAGCCGCAAGGGGTCTGCCATGAAAACAAAGGGCGATGAGACGGCTGACCAGACCGCGATG
ACCAAGATGGATGTGGATCAGAAAGCACTGGCTGAAGAGGCGGCGATGCCGGTGGCGGCCGACGAGACGGCAGAGCAGCA
GCAGCAGCAGCATCAGCATCAGGAGGA------GGAGGAGAAGGACTTTGGCAAGCTCCTTGAAAAGGCTAAAGCAGAGT
ACGCGCAGCTTATGGACAATCTGTTTGGTGGTGACCACCCAAAGGTGAAGTGGGTGAAATATTCCTCGTACATGTCGTAT
CCAGGTATGGAGGCCG--A--TGGAGGCTGATGGTCTCAAATTTGATGAGGAGGTTGAGCGACGATGAGGTTGCTCTGGT
ATATA---------------------------------------------------------------------------
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>SNPs
------S---------S-----------------------S------------------------S-S----SSSS----
----------------------------S-----------------------------------S---------------
------------S-------------------------------------------------------------------
S----------------------S-------------SS-S---------------------------------------
---------------------------------------------------------------S----------------
------------------------------------------S---------S------------S--S--------S--
----------------------------------------------------------------------------S---
------S-S-----------------------------S-------S---------SSS--SSS----------------
----------------------------------------------------S-----S------------------S--
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-------------------------------------------------------------------S-----------S
--------------------S----S--------------S---S------------S-S--------------S-----
---------------------------------------------S------S---------------------------
-S----------------------------------------------------------S-------------------
----------SS------------------------------------S-------------------------------
-----------------------------------------------------S--------------------------
-----------------------S--------------------------------------------------------
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---------------------------------------------------------------S---------------S
-----SS----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2293
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---------------------------------GGCCTAGGGTTCTGCCTTTT---------------------------
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>reverse_3301
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--------------------TTTCGGACGGAGGGAGTAGT----------------------------------------
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