>input_sequence_79018
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---------------------------------------------------------ATGGCTCAGGGAAGAGGCAGTGC
GGCGCAGGGCTTCACCCTCGGCTTCCTCGTGCTGTGCCTCCTCCTCGGCGCCGACACCGCCGGCGCCGCCACCTACAACG
TCGACTGGTCGTTCGCCGCCGGCAGCTGGCCCAGCGGCAAGAGCTTCCGCGCAGGGGACGTCCTCGGTGAGTGACCAGGC
CGTCAGAAAGATGGCACAGTCGATTACTCCTTCCT---GTTGCTCCGTATCATTACCTCGTCTCACGTGATGCGCGTCTT
TGATCTACGGCGCAGTGTTCAGCTACAACCCGGCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAACAGCTGC
CGGGGCTCCGGCGCGACGCACACCTACACCTCGGGGAGCGACCGCGTGACGCTCGTCCCTGGGACGAACTACTTCATCTG
CAGCCTCAGCGGCCACTGCGGGCTCGGGATGAAGATGGCCGTCACTGCAAACTGA-------------------------
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>chr4D_1_TraesCS4D01G218900
GAATCGAGCATATTTTATATGGAAATCTACTCCCCATTTTCTACAGCAAGTACGTTGTAAAAAGGCTAGGGCGCCCAATC
CACTGTCGACTGCTACAGTTGAGTGAGATAGGTTCAGCAAAGCGCATAAAACACCTCTGGTGAAACACTAGTTCTGAAGC
CGCCATACATGAGATCTGACAATATTGGTTTACAGGTGGGGCGATGTCGCATGCCTTGGCGTTCCTCGTCCACTCGTCCC
TCTCCTTGCTTGAAATCAAAACTGACTTCTGCAATTTTGTTAGAAAGTTTGGCTTGTTGTTATCCCTATAGCCTACACAC
TTGACTTTGAAGTTAAATGTCACATTCCTCCC----AAAAAAGTTAGATGCCCTGCAACAATGAAGAATTTGAAGTTAAA
TGAGGTAATCGAACATTCCACAAAATTTAGCTCTTCATTTAGGGTGTTTCAATAGGGTTCGTTGTGTTTTGAGAAGGAAT
AGG-GTCATTGGTGTGTGCATTGATAGATCAAAATG-GGATAAATCTTAGTAGATTGAGATTTTTCTATGATTTTTT-CA
CTCTCTTCGATCCATATTATTTTGTCGCTTAAATAAA------TGTATCAAGCTGCGTTTCAGTGCTAGATA--CATCCG
TTAAAGTGACAAGTAATATGGATCCGAGGGAGTATCATTATCCCAAGAGAAGGAATTGGCCGAG-AAATGTAATATTTCT
TTA---TACTTGCAGTAGGACAAGATGCATGTCCAGAAAGTTACACCTAAGTTCAGTTAGCATTTCCCAGCTTTTGAGGA
TCCATGGACGGCGTGCGCTACCACCCACGCCATTCGGCACA------ACTACTACTCCATTTTGGTATAA---CTACAGT
AATGTGCTGCCG--------TCTATGGACTTGCGATTGGATCCAGGTAGCCGGCTTTGCCCTTT---------------C
CGCCCCACGCTCTCGTGCACAG----------------TATAGCTAC--AGTCACTCCA-------------------CC
CCACACACT-CACAGAGGGACGCAGAGAAGCACCAGGGGAGTT--------ATGGCAATGGCTCAGGGAAGAGGCAGTGC
GGCGCAGGGCTTCACCCTCGGCTTCCTCGTGCTGTGCCTCCTCCTCGGCGCCGACACCGCCGGCGCCGCCACCTACAACG
TCGACTGGTCGTTCGCCGCCGGCAGCTGGCCCAGCGGCAAGAGCTTCCGCGCAGGGGACGTCCTCGGTGAGTGACCAGGC
CGTCAGAAAGATGGCACAGTCGATTACTCCTTCCT---GTTGCTCCGTATCATTACCTCGTCTCACGTGATGCGCGTCTT
TGATCTACGGCGCAGTGTTCAGCTACAACCCGGCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAACAGCTGC
CGGGGCTCCGGCGCGACGCACACCTACACCTCGGGGAGCGACCGCGTGACGCTCGTCCCTGGGACGAACTACTTCATCTG
CAGCCTCAGCGGCCACTGCGGGCTCGGGATGAAGATGGCCGTCACTGCAAACTGAAGC-----TAGCTGCAGCTTCCGGT
TTCA-AAAAAGCTAGCCGCGGCTGCGATGCCTTCTGTGCGCATGTGAAAACATCAATAAAGTAAGTACTAGCGATCTAAA
CACTCTTATATTTCTTTACAGAGGGAGTATGTGATAGTGTACGCCCCGTGTGTTGTA-----TCCCTGAGTTGCTAACAT
GATACAGAAGCCAGCAGTGTGCATCCATTGATGCGGAGACCGAGGACGTGATATCCTTCTTTTCGGAAGAAAAAAAAAAT
ACAGCAGCGAGTAGGCATGTGTTATGTGTGGATATGGAGGGTGGTAGGTAATGCATGATGTTTGTATGAACGATCGCCGG
CATGGCAGTAAAGAACCTCGGACTGGTTTGTTTAATTTGTTTCCAACAGTACGCATAGAGAGCCATGGTCTGGTCTAGGC
GAAATTCCAATTAGCCAGCTCACAGTCAGCTTTGAACCACTCTCACTCTTGGTCATATTTTTTTAATTTTCTTTTAGAAA
AGGAGGTTAAACCCCGGCCTATGCATCAACCGATGCATGCAGCCATCTGTATTAATTATTTCACACAAAGGTCTAACAAG
AATATACATCAATCCACCCGAAGCCACCACTCACACCTACAAACTTGATAATGTTGAGTGATCTCACTCCCCATATCTAA
AATCGATGTCGTCGTCGATCCATCCACATAATGACTCACACCTACAAACTTGATAATGTGGAGTGATCTCACTCCTCATA
TCTAAAATCGATGTCGTCGTCGATCCATCCACATAATGTATCGGGATCAACATCCGGTGCAGCAGACATAAAGCGCATCC
CACATGCATACGTTTTAGAAGCCGACATCATCATCGGAGCAATGACTCGTCTTCAGGAGAGAGATCCAATCCTTACCAGT
CCGGACATCCGTCGACGCCACCACAGCGCCCAACGGCACCACCGCCCTGCGCTCGTCCGTCCAGATGCAAAGACTCTGGA
AGATCTGTCGTGTGTAGCACCTGCCA
>chr4A_1
GAATCGAGCATATTTTATATGGAAATCTATTCCCCATT------------------------------------------
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----------------------------------TTTGGTTATAAAGTTTGCCTTGTTCTTATCCCTATAGCCTACACAC
TTGAATTTGAAGTTAAATGTCACATTCCTCAAAAGAAAAAAAGTCAGATGCCCTGCAATAATGAAAAATTTGAACTTAAA
TGAGGTAATGGAACATTCCACAAAATTTAGTTCTTCATTTAGGGCGTTTCAATAGGGTTCATTGTGTTTTGAGCAGGAAT
AGGAGTCATTGGTGTGTGCATTGACAGAACAA---------------------ATTGAGATTTTTCTATGATTTTTTTCA
CTCTCTTCGATTCATATTATTTTGTCGCTCAAATAAA------TGTATCTAGCTGTATTTCAGTGCTAGATATACATCGG
TTAGAGTGACAAGTAACATGGATGGGAGGGAGCATCATTATCCCAAGAGAAGGAATTGGCTAAGAA-ATGTAATCTTTCT
TTATACTACTTGCAGTAGGACAAGATGCATGTCCAGAAAGTTACACCTAAGTTCAGTTAGCATTTCCCAGCTTTTGTGGA
TCCATGGACGGCGTGCGCTACCACCCACGCCATTCGGTACAGCTACTACTACTACTCCATTTTGGTATAATAACTACAGT
AGTGCGCTGCCGTCTATCAGTCTATGGACTTGTGATTGGATCCAGGTAGCCGGCTTTGCCCTTTCCGCCTCTATAAATGC
CGCCCCACGCTCTCGTCCACAGCAAAACCCAACTGAGCTACGTATAACTAGTCACTCTGCTCTCTCACTCCACCG-----
-CACACACT-CACAGAGGGACGCAGAGAAGCACCAGGGGAGTCCGGGAGTGATGGCAATGGCTCAGGGAAGAGGCAGTGC
GGCGCAGGGCTTCGCCCTCGGCTTCCTCGTGCTGTGCCTCCTCCTCGGCGCCGACACCGCCGGCGCCGCCACCTACAACG
TCGACTGGTCGTTCGCCGCCGGCAGCTGGCCCAGCCGCAAGACCTTCCGCGCAGGGGACGTCCTCGGTGAGTGACCAGGC
CGTCAGAAAGATGGCACAGTCGATTACTCCTTCCCACCGTTGCTCCGTATCATCACCTCGTCTCATGTGATGCGTGTCTT
TGATCTACTGCGCAGTGTTCAGCTACAACCCGATCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAACAGCTGC
CGCGGCTCCGGCGCGACGCACACCTACACCTCGGGGAGCGACCGCGTGACCCTCGTCCCCGGGACGAACTACTTCATCTG
CAGCCTCAGCGGCCACTGCGGGCTCGGGATGAAGATGGCCGTCACTGCAAACTGAAGCGAGTCTAGCTGCAGCTTCCGGT
TTCA-GAAAAGCTAGCTGCGGCTGCGATGCCATCCGTGCGCATGTGAAAACATCAATAAAGTGTTGTGGAACTCAGTGAC
TCC------------------------------------------CCGCGTGTTGTA-----T-CCTGAGTTGTTAACAT
GATACAGAAGCCAGCAGTGTGCATCAATTGATGCAGAGACGGAGG---TGGTATCCTTCTTTTCGGAAGGAAAGAAAAAT
ACAGCAGCCAGTAGGCATGCGTTATGTGTGGATATGGAGGGTGGTAGGTAACGCATGATGTTTGTATGAACGATCGCCGG
CATGGCAGTAAAGAACCTCGGACTGGTTTGTTTAATTTGTTTCCAACAGTACGCATAGGGAGCCATGGTCTGATCTAGGC
GAAATTCCAATTAGCCAGCTCACAGTCAGCTTTGAACCACTCTCACTCATGATCATA-TTTTTTTATTTTCTTTTAGAAA
AGAAGGTTATACCCCGGCATATGCATCAATCGATGCATGAAGCCATTTTTATTAGTTATTC--CACAAAAGTCTAACAGG
AATATACATCAATCTACCCGAAGCCACCACTCACACCTACAAACTTGATAATGTGGAGTGATCTCAATCCCCATATCTAA
AATCGAT-------------------------------------------------------------------------
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>chr4B_118
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-------------------------------------CAAAGCGCATAAAACACCTCTGGCGAAACACTAATTCTGAAGC
CGCCATACATGAGATCTGACAGTATGAGTTTACAGGTGGGGCGATGTCGCATGCCTTGGCGTTCCACGTCCACTCGTCCC
TCTCCTTTCTTGAAATCAAAACTGACTTCT-CAATTTTGTTAGAAAGTTTGGCTTATTGTTATCCCTATAGCCTACACAC
TTGAATTTGAAGTTAAATGTCACATTCCTCCA---AAAAAAAGTTAGATGCCCTGCAACAAAGAAGAATTTGAAGTTAAA
TGAGGTAATGGAACATTCCACAAAATTTAGCTCTTCATTTAAGGCGTTTCAATAGGGTTTGTTGTGTTTTGAGAAGGAA-
AGGAGTCATTGGTGTGTGCATTGCTAGAACAAAATTAGGATAAATCTTAGTGGATTGAGATTTTTCTACGATTTTTTTTA
CTCTCTTCGAAGCATATTATTTTGTCGCTCAAATAAAAATAAATGTATCTAGATGTATTTCAGTGCTACATA--CATCCG
TTTGAGTAACAAGTAATACCGATTAGAGGGAGCATCATTATCCCAAGAGAAGGAATTGGCTGAG-A-ATGTAATCTTTCT
TTA---CACATGCAGCAGGACAAGATGCATGTCCAAAAAGCTATACCTAAGCTCAGTTAGCATTTCCCAGCTTTTGTGGA
TCCATGGACGGCGTGCGCTACCACCCACGCCATTCGGTACA------ACTACTACTCCATTTTGGTATAA---CTACAGT
AATGTTCTGCCG--------TCTATGGACTTGTGATTAGATCCAGGTAGCCGGCTTTGCCATTTCCGCCTCTATAAATGC
CGCCCTACGCTCTCGTGCACAGCAAAACCCAACGGAACTATAACTAC--AGTCACTCTGCTCCCTCACTCAACCTGTCCC
CCACACACCACACAGAGAGACGCAGAGAAGCAGCAGGAGG--------GTGATGGCTATGGCTCAGGGAAGAGGCAGTGC
GGCGCAGGGCTTCGCCCTCGGCTTGCTAGTGCTGTGCCTCCTCCTCGGCGCCGACACCGCCGGCGCCGCCACCTACAACG
TCGACTGGTCGTTCGCCTCCGGCAGCTGGCCCATCGGCAAGAGCTTCCGCGCAGGGGACGTCCTCGGTGAGTGACCA---
-----------------AGTCGATTGCCCCTCCCC---GTTGCTCCGTATTATTACCTCGTCTCATGTGGTGCGTGTCTC
TGATCTACGGGGCAGTGTTCAGCTACAACCCGGCCGTGCACAACGTGGTGGCGGTGGACGCCGGCGGCTACAACAGCTGC
CGGGGCTCCGGCGCGACGCACACCTACACCTCGGGGAGCGACCACGTCCCGCTCGTCCCCGGGACGAACTACTTCATCTG
CAGCCTCAGCAGCCACTGCGGGCTCGGGATGAAGATGGCCGTCACTGCAAACTGAAG-----CTAGCTGCAGCTTCTGGT
TTCAAGAAAAGCGAGCTGCGACTGCGATGCCATCTGTGCGCATGTGAAAACATCAATAAAGTGCTGTGGAACTCAGTGAC
TCCT---------------------AGTATGCGATAGTGTACGCCCCGTGTGTTGTACTGTATCCCTGAGTTGTTAACAT
GACACAGAAGCCAGCAGTGTGCACCAATTGATACAGAGACCGATG---TGATATCCTTCTTTTCGGAAG---AGAAAAAT
ACAGCAGCCAGTAGGCATGTGTTATGTGTGGATATGCAGGGTGGTAGGTAACGCATGATGTGTGTAAGAACGATCGCCGG
CATGACAGTAAAGAACCTCGGACTGGTTTGTTTAATTTGTTTCCACCAGTAAGCACAGAGAGCCATGGTCTGGTTTAGGC
GAAATTCCAATTAGGCAGCTCACAGTCAGCTTTGAACCACTCTCACTCTTGGTCATATTTCTTTTGATTTT---------
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>SNPs
-----------------------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------S---------S---------
---------------------S---SS--------------------------------------S--------------
-------S----------------------S-------------------------------------------------
----S--------------------------S------------------------------------------------
---------S----------------------------------S-----------------------------------
----------------------------S------S---------------S----------------------------
-----------S-----------------S-------------------S-----SS-----------------------
---S-------------------SS-------S---------------------------S-----S-------S-----
----------------------------------------------------------------------------S---
-------------------------------------S------------------------------------------
--------------------------------S-----------------------------------------------
------------------------------------------S--------------SS---------------------
------------------------------------------S-------------------------------------
-------------S------------------------------------------------------------------
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----------------------------------S------------------------------S--------S-----
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-----------------------------------------------------------S--------------------
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-----S----------S--------------S------------------------------SSSSSSS-S-SSSS-S-S
SS--SSSSSSSSSSSSSSSSSSSSS------S-----------------------------------------S------
-------------------------S--------S----------SSS---------------------S---S------
--------S------------------------------------------S----------------------------
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----------------------------------------------------------------S---------------
--S------S--------S----------S---------S------S-S-----S-----SSS------S--------S-
--------------S---------------------------------------S-----------S-------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_94
--------------------------------------------------------------------------CCAATC
CACTGTCGACTGCT------------------------------------------------------------------
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>reverse_1355
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--------------------------------------------------------------------------CGTCTT
TGATCTACGGCGCA------------------------------------------------------------------
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>forward_1083
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-----------------------AGAGAAGCACCAGGGGAGTT-------------------------------------
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>reverse_2250
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---------CGTCGTCGATCCATCCACAT---------------------------------------------------
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