>input_sequence_79014
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-----------------------------------------ATGGCCGGGGAAGACGGCAAGGTGGATCATCCACGCCGC
AGCGGGCGCCTGAAGGCTCAAACTCGCGCGGATCAGGAGCACGGTGCTGAGGACACCAGCGAGGTGGACTGCTCGCGCCG
CCGCTGTCTCAGGCCTCAGTCTTCCTCGGGCCAGGAGGTCGATGGCGAGGCGGACCACCCGCGCTACAATTTACGCCTCA
GGTATTCGTTTTCCGCCAATCCTACCTTCATGTAGTGTTTGGTCAGGTTTAGCTTAGTAGGATTTGTATAACCATTTTGC
TAGTTATTGTATAGGAACATACAATCAAGTTACTTTGCTCTTAACAGTACACTTGCATGCTGAACATAGATGTGCAGGAT
GCATACGTGCCTTGTGTAGCTTTTTATGTAAGCATGTTTAGCCTTGTAATTGTAGGTTTGGGGCACAAGAATGCACCAAA
CAAAAAATTGGTAATAAGAGAGGTCTGACAGGCTAG--------------------------------------------
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>chr4A_1_TraesCS4A01G001700
TCAGTTAACTTGGGCCTGACAATTTCCCCCCTCTTAAGGTGCTGCTTGTGCACGAGTAGCTCTAGGAACATGAGTTGGCC
ACTGTGGTGGTGCAGTGAATTCCGGGAAATTGGCCTGGAAGAAAAAGAGAGATCTTCCCACGTTGCGTCAGTAGGTGCCA
TGT-TTTCCCAGTGAACCAACCATTGTGCCACAGGTGTGTGTTTCCTCTGGATAATTCTTTTATCCAGAACCGCAAATGG
TGAGGTTTTGAGTTTGCCATCCTCAGTCACCATAGGTACATTAGGAAGAGGGATAGCCTGAGAGCCCAGATGTTTCTTCA
AGTGACTAATGTGGAAAACAGAATGTATGAGAGCTGTGTCTGGTAATTGTAATCTGCAGGCAACTGTTCCCACTTTGGCC
AATACCTTGTAGGGACCACAGTATTTCGACCTGAGTTTCAAAGAGCCTCTTAGTCCAAAGGCATTCTGCCTGTAAGGTTG
TACTTTGAGATAGTCATTGTCTCCAACTTCCAATTGTCTTTCTGTCCTCTTGAGATCTGCAAAGTATTTCATTCTATCTT
GAGCTTGGGGAAGGTTACCTCTTAGTTGCTCCCTCATCTTCTCTCTTTGCTCTACAAGTGGCTCTAGCTTCTGGCAGTAC
TGTTCTGGGCAATGATAGTTCTCTAATCTGAGGGGGCTGATAAGCATACAATGCTTCAAATGGAGAGACTTTTAATGATG
TGTGATAGGTAGTATTGTACCACCACTCTGCCATTGACAACCAATTCATCTAGTCCTTGGGATTTTGGAAACTACATCTT
ACATGTGTCATTGACTGAATTCAACATAAAAAAAATAGTCAGCAGGTGGGCAACTACTGTGTTTATGCACACAAATTTTC
ATGCTTCATTTTCCTTGGTCAGGCAACAGACAAGTAGCAATTACATACTAAAATAAAATGCAATGTATTGCAGGTGATAG
CACCCCCGCCCCGTCTACCGTGTCACCGCAACCTGCCGCCCATGGCCGGGGAAGACGGCAAGGTGGATCATCCACGCCGC
AGCGGGCGCCTGAAGGCTCAAACTCGCGCGGATCAGGAGCACGGTGCTGAGGACACCAGCGAGGTGGACTGCTCGCGCCG
CCGCTGTCTCAGGCCTCAGTCTTCCTCGGGCCAGGAGGTCGATGGCGAGGCGGACCACCCGCGCTACAATTTACGCCTCA
GGTATTCGTTTTCCGCCAATCCTACCTTCATGTAGTGTTTGGTCAGGTTTAGCTTAGTAGGATTTGTATAACCATTTTGC
TAGTTATTGTATAGGAACATACAATCAAGTTACTTTGCTCTTAACAGTACACTTGCATGCTGAACATAGATGTGCAGGAT
GCATACGTGCCTTGTGTAGCTTTTTATGTAAGCATGTTTAGCCTTGTAATTGTAGGTTTGGGGCACAAGAATGCACCAAA
CAAAAAATTGGTAATAAGAGAGGTCTGACAGGCTAGGACACCGGTGAATTGATTTGGCTCGCATGATTGGACCAACCTAT
TTAGGAATCTTTTGTCTATGGTGTGGCTTAGCTGCGAAATTAAGCGCAAGAAAAAAAGAAGTAATTTTTTTGGTCCACCT
TAACTTTCTAGCCGCCGCTATAAGCCACTCGGAGGTAGCTTCCCGAGCTTCCCCTTTAAGTGGAAATTGCTAAATCCTAC
GTAGAATTTACCTAAAAGGGAACCATTATTCCATACAAAATGCCAGCGCACCAATCTACTTTGGACAACCTGCATAAAGA
CAACAACACCAGCCAATCCAATCCTGCACAACCGCCTCCTCGTCGTAGACACCATGGTTGTCGGCTGCCTACTCTTTCGC
CTTGTCGTGGTTGTGGTGTCCCTCATCACGACGTCTCTGGTGGCCTTTCACGCGTCCCCGCCAAGCTCACACCACTGCCT
CTAGTTCGCCGCCTCGTAGAGTTGCACTGCCTTGCTATTTCGCTCCACCATTCGAGGTCAACACCTTTATCGTTGTGGAT
CCTAGGTTGTTGCGAGGCTTACAGTGTCGGTGGTTTACACACCGACCGTTGAGTTCTCTGAGCCGTGCTCCTCTCCGTCT
TTGTGTGTGCCTCGGGTGAAGTAGGCCACCATGTTTTTGGGTGTTCAAGGTTGATAGGCCTTCTACACCGAGCTTGGAGC
CATCGCCGGTGGGTGATGTGGTTGCTTTTATTCCTCGTCACCTCCTGGGTCGGTTGGCTCCTCATCTGCATGCTTGCCTG
CAAGGTCGCCGGCTTCCCTCCACCATCGAGCCCTACGACTTGTGCTCTCAACTCTGCTGCCTAGCCGGAGCTCGAAGGTA
ATCCCGCACCGCTGTGCTATTCTGATGCTTTGCCCCTCTGCTTCAGCTGGAGGCCGTTGCTAGAGCCGCAAGCGCACTCA
CTCGTGCATGCTTGTAGATTGCTCGATGATTTACAGTTGCGCCTTGAAGTTGCCGAGTGCTGGTTGCGTTGCGTGC
>chr3D_47
----------------------------------------------TGTCCACGAGCAGCTATTGGAACATGAGGTGGCC
GTGGTGGTGGTGGGGCGATGTCTGGGAAATTGGCCTGCAAG--AAAGAGGGATCTTCCCATGTTGTGTCAGTAGCAGCCT
TGTGTTTCCCAGTGAATTAACCACTGGGCCACTGGGGTGTTTCTCCTCTGGATAATTCTTTTGTCTAGGACTGCAAAAGG
TGATGTTTTGAGTTTGTCGTCTTCTGTAACGAGTGGTACATTGGGAAGAGGGATATCCTGTGAGCCGAGATGTTTCTTCT
GGTGACTAATGTGGAACACTGGATGGATGAGAGCAGTTTCTGGTAATTGTAGTATGTACATAACTGTGCCCACCTTGGC-
--TACCTTGTAATGGCCATAGTAT---GACCTAAGCTTCAAAGAGCTTCTTAGTCCAAAAGCATTATGCATGTATGCTTG
TACTTTGAGATAGACATCGTCTCCAACTTCCAATTGCCTTTCTGTTCTCTTGAGATCTGCAAAATACATCATTCTGTCCT
GAGCTTGCAGCTGATTTCCTCTTAATTGCTCCCTCATCCTTTCTCTTTGCTCTACTA-TGACTCTAGCTTCTGGCAGCAC
TGTTTCAGGCAAAGATGTTTCTACAATCTGAAATGGCTGATAAGCATACAGTGCTTCAAATGGGGAGACTTTTAAATATG
TGTGGTAGGTAGTATTGTACCACCACTCTGCCATTGATAACCAATTCATCCAGTCCTTGGGATTTTGTAAA---------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------S----S-S----------S-----
SSS---------SS-S--SS--S--------------S---SS------S----------S----S--------SS---S
----------------SS-----S--S-----S--S----S-S-------------------S--S--S--S-----S--
---S------------S-S--S--S--S--S-SS--------S------------S----S-----S------------S
S---------------S--S-S---S--------S--S-------------S-S--S-SSS------S-----S-----S
SS---------SS-S---S-----SSS-----S--S----------S------------S-----S---S----S-S---
-------------S---S------------------S--------S-----------------S--SS-------S--S-
-------SS-SS-S--S-------S-------------S-S--------------S-S--S----------------S--
----SSS-----S---SS----SS-------SSS----------------S------------S-----------SS---
----S--------------------------------S------------S----------------S---SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_401
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-------------------------------------------------------------AACTGTTCCCACTTTGGCC
A-------------------------------------------------------------------------------
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>reverse_2039
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--------------------------------------ACACCGACCGTTGAGTTCTC----------------------
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