>input_sequence_79002
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------------------------------------------------------------------ATGGGCCAGATCCA
GTACTCCGAGAAGTACTTCGACGACACCTTCGAGTACAGGTTCGTGCCCAAACCCTAGCCCCTCCCGATCTCATCCC---
----------CTCGGTGCGCCGCGGATGGCGAAACCCTAAGTAACCAACTAACACGGCCGATGTCGCCGCGCGCAGGCAC
GTGGTCCTCCCGCCGGAAGTCGCCAAGCTCCTCCCCAAGAACCGCCTCCTCGCCGAGGTAACCGTCCAGATTTCCGTCCG
CATTCCCGTAAGATCGCGTTTTCTCGCCGGATCGGCTCTCTGATGTTGCGAAATTGGGGTTTTTTTC-CCCTTGCAGAAC
GAGTGGCGCGCGCTGGGCGTGCAGCAGAGCCGCGGGTGGGTGCACTACGCCGTCCACCGGCCGGAGCCGCACATCATGCT
GTTCCGCCGCCCGCTCAACTACCAGCAGCAGCAGGACGCGGCTGCTGCCGCCGCGGCGCAGATGATGCCCAAGTGA----
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>chr4D_1_TraesCS4D01G308900
TACGTGGCGCTCGTGGACTGGTCAAACCGGCGGCGTACCGGCTCTGTATGTGAAACAGTGATCGTATAATCACGTCCCAT
CGTACATAGTGACCGTATTTCTAAGTACAATGACCAAACCAAGCTCGCGGCGCAAGTTCAAGTACCTGTAGTGTATTTTA
CTCAAAACAATTCTCTGCTCCCGCTGCGACGA--GAGAGAGATGGAGGCCCAACGGTTAGATTTCCGCGCGATTTCGAAA
TTCGAAACCAACG-CGAAACCCAGCCCACGCCGCCGACGAATCCGGTGCG---CGATGAGGTGGTGGATCACGAT----G
GATCGGCAGCAACGACTACCTGCCCTACCCCGCGCCCCGCCATCCGGGCCGTCCATCCCCGCACCGACGGCCCCGCCCGC
CCCGCTCCGTTTTAAATAGACAGACACA--CGCTCCCCCACCCCCACCCCACCCCAACTCGTCCCCTCCCCCTCCCC---
CCTCGCCGCCGCCCGTCTCCGACGCTCCATCAGCGCCGACAGCCGCCCCCCTCTCAGCTCCAAGGTTGGTCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCTCGCCCCCCTCC
CCCGCGAAATCCGCCCATCCCTCCGCTGG---------------------------------------------------
------------------------------------ATCAGCCATCCGTTGATTGATCTGGTGGTCTGT----TCGGATT
TCTCTGAAATGGTTTGGGGATTTGTTCTTGGTGCAGGGCCTCGATCGAGAAGCGGCGGCGGTGGACATGGGCCAGATCCA
GTACTCCGAGAAGTACTTCGACGACACCTTCGAGTACAGGTTCGTGCCCAAACCCTAGCCCCTCCCGATCTCATCCC---
----------CTCGGTGCGCCGCGGATGGCGAAACCCTAAGTAACCAACTAACACGGCCGATGTCGCCGCGCGCAGGCAC
GTGGTCCTCCCGCCGGAAGTCGCCAAGCTCCTCCCCAAGAACCGCCTCCTCGCCGAGGTAACCGTCCAGATTTCCGTCCG
CATTCCCGTAAGATCGCGTTTTCTCGCCGGATCGGCTCTCTGATGTTGCGAAATTGGGGTTTTTTTC-CCCTTGCAGAAC
GAGTGGCGCGCGCTGGGCGTGCAGCAGAGCCGCGGGTGGGTGCACTACGCCGTCCACCGGCCGGAGCCGCACATCATGCT
GTTCCGCCGCCCGCTCAACTACCAGCAGCAGCAGGACGCGGCTGCTGCCGCCGCGGCGCAGATGATGCCCAAGTGATCGG
CCCCAGCGAGGGCAGTGGCGACCGGGGGTTGGAACTCCTGAAAACCCCAGGCCCTTTTGATCTCTAAAAGGGCGATCGCA
CTGGTTTGTCTGGTCAGGATCTAGTTGTGTTGGTGGTGTCCACCATGTGTTCGTGGAAATGCCTGGGAGGAACTTGCAGT
GTGTTAGT---CTGTGTTATTATCCTGGATACTGTTGAATGCTACCTGTTATGTGATGCTGGTACTGTTGGTAGATCTCC
CCGTGATGATCTGTTAGTGTTAATGCTTGCTTTACTGTTATCTGGTTCCTTA-GATTAGGTGTATGGTGTTCATGTGATA
GTGAATCTTATGTTTAGCAAGAGGATTTGGAGCACTGGTTATGGATGATCTATGCACCGTCCAGACTAAAATGCACCTCC
TTTGCATGTTTGGTACATCATCAACTGTATCATGTTAGTCTGAAGTGACAATTTTCGCTGCGCTGTTGAATGTCCATTAC
AGTCGAATGATGTCCACATTTGTTAACATCATCAACATTGATTGTGACACTGGTAATTCGCAGTGGGAGGAAATGCCTGG
GAGGAACTTGCCTTGTCTTGGTCTTTGTTATCATTGGCACTCTTGAATGCTAAGTTGC-TATGCGATGCTGTTATAATAA
CTGGTAGAACTTCCTGTAATTATCTGCTAGTGATGTTGGTAGAACTTCCTGTAATGTCTTGTTCCTCACCTTTAGGATTA
TAGAGTGATGGTGAATCTTATGCTAGCAAGAGCAAATGGAACTCTGGACTTTCAAAGAATTATCACAGGCAAAAATGCTC
GTCTTTTTGCACATTATATACCCTGGGCCGGTTAGCATGAAGGAGTCACTGTTTTTTGTGTGCTGTTGAATGTCCAGTAC
CATTGTAAATTTTCCAAAGCTATATTGCTGTCACAGGAAGTAAAAACAACTGGGGTTCTGCAGAGTTTGAAGGACAGGTT
GTGCAAGTGTTCACCATGCTGCTTTGTGTACGTTTAGCATT
>chr4A_169
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--------AACTCTCGGCTCCCGCTGCGACGAGAGAGGGAGATGGAGACCCAACGGTTAGATTTCCGCGCGATTTCGAAA
TTCGAAACC-AGCACGAAACCCAGCCCACGCCGCCGACGAATCCGGTGCGATGCGATGAGGTGGTGGATCACGATGGATG
GATCGGCAGCAACGACTACCCTGCCCTACCCGCGCCCCGCCATCCGGGCCGTCCATCCCCGCACCGACGGCCCCGCCCGC
CCCGCTCCGTTTTAAATAGACGCACACACACGCTCCCCCACCCCCACCCCACCCCAACTCGCCCCCTCCCCCCCTCCCCG
CCTCGCCGCCGCCCGTCTCCGACGCTCCATCGGCGCCGACAGCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCGTCGGCTGCTGATCGATTGGTCGGTGGTTTTACTCGGATT
TTTCTGAAATGGTTTGGGGATTTGTTCTTGTCGCAGGGCCTCGATCGAGAAGCGGCGGCGGCGGACATGGGCCAGATCCA
GTACTCCGAGAAGTACTTCGACGACACCTTCGAGTACAGGTTGGTGCCCAAACCCTAGCCCCTCCCGATCTTATCCC---
----------C-CGGTGCGCCGCGGATCGCGAAACCCTAACTAACTAACTAACACGGCCGATGTCCCCGCGCGCAGGCAC
GTCGTCCTCCCGCCGGAAGTCGCCAAGCTCCTCCCCAAGAACCGCCTCCTCGCCGAGGTAACCGTCCAGATTTCCGTCCG
CATTCCCGTAAGATCGCGTTTTCTTGCCGGGTCCGTTCTCTGATCTTGCGAAATTTTGGGTTTTTTTTCCCTTGCAGAAC
GAGTGGCGCGCGCTGGGCGTGCAGCAGAGCCGTGGGTGGGTGCACTACGCCGTCCACCGGCCGGAGCCGCACATCATGCT
GTTCCGCCGCCCGCTCAACTACCAGCAGCAGCAGGACGCGGCGGCCGCCGCCGCGGCGCAGATGATGCCCAAGTGATCGG
CCCCAGCGAGGGCAGTGGCGACC-GGGGTTGGAACTCCTGAAAACCCCAGGCCCTTTTCATCTCTAAAAGGGCGGTCGCA
CTGGTTTGTCTGATCAGGATCTAGTTATGTTGGTGGTGTCCACCATGTGTTTGTGGAAATGCCTGGGAGAAACTTGCAGT
GTGTTAGTAGTCTGTGTTATTATCCTGGATACTCTTGAATGCTACCTGTTATGTTATGCTGGTACTGTCTGTAGATCTTC
CTGTGATGATCTGTTAGTGTTGATGCTTGCTTTACTGTTATCTGGTTCCTTATGATTAGGAGTATAGAGTTCATGTGATA
GTGAATCTTATGT-TTGCAAGAGGGCATGGAGCATTTGTTATGAATGAGCTATGCACTGTCCAGAGTAAAATGCACCTCC
TTTGCACGTTTGGTACATCATCAGCGGTATCATGTTAGTCTGAAGTCACATTTTTCGCTGCGCTGTTGAATGTCCATTAC
AGTCGTGTGATGTCCACATCTGTTAACATCGTCAACACTGGTTGTGACACTGCTAATTTACTGTGTGAGGAAATGCCTAG
GAGGAACTTGCC----------CTGTGTTATCATGGGTACTCTTGAATGCTTAGGTTTTTATGTGATGCTGGTACAGTTG
ATAGAACTTG---CTGTAATGATCTGCCAGGGATGTTGGTAGAACTTCCTGTGATGTCTGGTTCCTCACCTTTAGGATTA
TAGAGTGATG----------------------------------------------------------------------
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>chr4B_187
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-----------------------------CGAGAGAGAGAGATGGAGACCCAACGGTTAGATTTCCGCGCGATTTCGAAA
TTCGAACCC-ACG-CGAAACCCAGCCCACGCCGCCGACGAATCCGGTGCG---CGACGGGGTGGGG--------TGGACG
GATCGGCAGCAACGACTACCTGCCCTACCCCGCGCCCCGCCATCCGGGCCGTCCATCCCCGCACCGACGGCCCCGCCCGC
CCCGCTCCGTTTTAAATAGACACACGCACACACTCCCCCACCCCCACCCCACCCCACCTCGCCCCCTTCCCCTCCCC---
CTTCGCCGCCGCCCGTCTCCGACGCTCCATCAGCGCCGACAGCCGCCCCC-TCTCCGCTCCGAGGTCG------------
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---------------------------------------------------------------GTCGCTCGCCCCCCTTC
CCCGCGAATCCCCCG-ATCCCTCCGCTGG---------------------------------------------------
------------------------------------ATCAGCCGTCTGTTGATTGATCTGGTGGTCCGT----TCGGATT
TTTCTGAAATGGTTTGGGGATTTGTTCTTGTTGCAGAGCCTCGATCGAGAAGCGGCGCCGGCGGACATGGGCCAGATCCA
GTACTCCGAGAAGTACTTCGACGACACCTTCGAGTACAGGTTCGTACCCAAACCCTAGCCCCTCCCGATCTCATCCCCCG
ATCTTATCCCCTCAGTGCGCTGCGGATGGCGAAACC--------CTAACTAACACGGCCGATGTCGCCGCGCGCAGGCAC
GTGGTCCTCCCGCCGGAAGTCGCCAAGCTGCTCCCCAAGAACCGCCTCCTCGCCGAGGTAACCCTCCAGATTTCCGTCCG
CATTCCCGTAAGATCGCGTTTTCTCGCCGGATCGGCTCTCTGATGTTGCGAAATTGGGGTTTTTTTTTCCCTTGCAGAAC
GAGTGGCGCGCGCTGGGCGTGCAGCAGAGCCGCGGGTGGGTGCACTACGCCGTCCACCGGCCGGAGCCGCACATCATGCT
GTTCCGCCGCCCACTCAACTACCAGCAGCAGCAGGACGCGGCGGCCGCCGCCGCGGCGCAGATGATGCCCAAGTGATCGG
CCCCGGCGAGGGCAGTGGCGACC-GGGGTTGGAACTCCTGAAAACCCCAGGCCCTTTTCATCTCTAAAAGGGCGGTCGCA
CTGGTTTGTCTGATCAGGATCTAGTTGTGTTGGTGGTGTCCACCATGTGTTCGTGGAAATGCCTGGGAGGAACTTGCAGT
GTGTTAGT---CTGTGTTATTATCCTGGATAATCTTGAATGCTACCTGTTATGTTATGCTGGTACTGTCTGTAGATCTAC
CTGTGATGATCTGTTGGTGTTAATGCTTGCTTTACTGTTATCTGGTTCCTTATGATTAGGGGTATAGTGTTCATGTGATG
GTGAATCTTATGT-TAGCAAGAGGACATGGAGCATTTGTTATGGATGAGCTATGCACTGTCCAGACTAAAATGCACCTCC
TTG---CGTTTGGTACATCATCAACCGTATCATGTTAGTCTGAAGTCACATTTTTCGGTGCGCTGTTGAATGTCCATTAC
AGTCGAATGATGTCCACATTTGTTAACATCATCAACACTGGTTGTGACACTGGTAATTCGCAGTGGGAGGAAATGCCTGG
GAGGAACTTGCCTTGTCTTCGTCTTTGTTATCATTGGCACTCTTGAATGCTAAGTTGC-TATGCGATGCTGTTATAATGA
CTGGTAGAACTTCCTGTAATTATCTGCTAGTGATGTTGGTAGAACTTCCTGCAATGTCTTGTTCCTCACCTTTAGGATTA
TATAGTGATGGTGAATCTTATGCTAGCAAGAGCAAATGGAACTCTGGACTGTCAAAG-ATTATCACAGGCAAAAATGCAC
TTCTTTTTGCATATTATATATCCTTGGCCAGTTAGCATGAAGGAGTCACTGTTTTTTGTGTGCTGTTGAATGTCCAGTAC
CATTGTAAAATTTCCAAAGCTATATTGCTGTCACAGGAAGTAAAAACAACTGGAGTTCTGCAGAGTTTTAAGGACAGGTT
GTGCAAGTGTTCACCATGCTGCTTTGTGTA-----------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS--S----S-------------------------------S--------------------------------
---------S----------------------------------------------------------------------
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----------------------S--------------------------------------S------------------
--------------------------------------------------S----S-----S----S-SSS---------
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------------------------------------------------------------------------------S-
--------SS--S-SS----------------------------------------------------------------
-------------------------------------------S--S-------------------S-------------
-S----------------------------S------------------------------S------------------
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----------------------------------------S----S----------------------------------
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------------------------------------------------------------------S-------------
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------------------------------------------S--S----------------------------------
-----------------------S----------------------------------S---------------S-----
------------S-------------------------------------------------------------------
---------------------------------S--------------------S-------------SS--------S-
-S----------------------------------------------------------S----S--------------
-------------S-----------SS-------S-S-----------S--------S----------------------
------S------------------S--------------------S---S-----------------------------
-------------------------------------S--S---------------------------------------
-------------------S----------------------------------------------------------S-
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--------------------------------------------------S------S--------------------S-
S----------S--------S---S----S--------------------------------------------------
---------S-------------------------------------------S--------------S-----------
------------------------------SSSSSSSSSSS
>forward_148
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------------------------------------------------GGCGCAAGTTCAAGTACCTG------------
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>reverse_1675
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--------------------------------------------------------------------------ATCGCA
CTGGTTTGTCTGGT------------------------------------------------------------------
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