>input_sequence_78999
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-----------------------------------------ATGGGCCAGATCCAGTACTCCGAGAAGTACTTCGACGAC
ACCTTCGAGTACAGGTTGGTGCCCAAACCCTAGCCCCTCCCGATCTTAT-CCCCCG--------------GTGCGCCGCG
GATCGCGAAACCCTAACTAACTAACTAACACGGCCGATGTCCCCGCGCGCAGGCACGTCGTCCTCCCGCCGGAAGTCGCC
AAGCTCCTCCCCAAGAACCGCCTCCTCGCCGAGGTAACCGTCCAGATTTCCGTCCGCATTCCCGTAAGATCGCGTTTTCT
TGCCGGGTCCGTTCTCTGATCTTGCGAAATTTTGGGTTTTTTTTCCCTTGCAGAACGAGTGGCGCGCGCTGGGCGTGCAG
CAGAGCCGTGGGTGGGTGCACTACGCCGTCCACCGGCCGGAGCCGCACATCATGCTGTTCCGCCGCCCGCTCAACTACCA
GCAGCAGCAGGACGCGGCGGCCGCCGCCGCGGCGCAGATGATGCCCAAGTGA----------------------------
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>chr4A_1_TraesCS4A01G410900
ATGGAGTGAATATTTTTGCCGTATGTCCAGTCCAAGTCCAAAGGAAATGCAAAGCCCGTTGAAAACTCTCGGCTCCCGCT
GCGACGAGAGAGGGAGATGGAGACCCAACGGTTAGATTTCCGCGCGATTTCGAAATTCGAAACC-AGCACGAAACCCAGC
CCACGCCGCCGACGAATCCGGTGCGATGCGATGAGGTGGTGGATCACGATGGATGGATCGGCAGCAACGACTACCCTGCC
CTACCCGCGCCCCGCCATCCGGGCCGTCCATCCCCGCACCGACGGCCCCGCCCGCCCCGCTCCGTTTTAAATAGACGCAC
ACACACGCTCCCCCACCCCCACCCCACCCCAACTCGCCCCCTCCCCCCCTCCCCGCCTCGCCGCCGCCCGTCTCCGACGC
TCCATCGGCGCCGACAGCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNATTCGTCGGCTGCTGATCGATTGGTCGGTGGTTTTACTCGGATTTTTCTGAAATGGTTTGGGGATTTGT
TCTTGTCGCAGGGCCTCGATCGAGAAGCGGCGGCGGCGGACATGGGCCAGATCCAGTACTCCGAGAAGTACTTCGACGAC
ACCTTCGAGTACAGGTTGGTGCCCAAACCCTAGCCCCTCCCGATCTTAT-CCCCCG--------------GTGCGCCGCG
GATCGCGAAACCCTAACTAACTAACTAACACGGCCGATGTCCCCGCGCGCAGGCACGTCGTCCTCCCGCCGGAAGTCGCC
AAGCTCCTCCCCAAGAACCGCCTCCTCGCCGAGGTAACCGTCCAGATTTCCGTCCGCATTCCCGTAAGATCGCGTTTTCT
TGCCGGGTCCGTTCTCTGATCTTGCGAAATTTTGGGTTTTTTTTCCCTTGCAGAACGAGTGGCGCGCGCTGGGCGTGCAG
CAGAGCCGTGGGTGGGTGCACTACGCCGTCCACCGGCCGGAGCCGCACATCATGCTGTTCCGCCGCCCGCTCAACTACCA
GCAGCAGCAGGACGCGGCGGCCGCCGCCGCGGCGCAGATGATGCCCAAGTGATCGGCCCCAGCGAGGGCAGTGGCGACC-
GGGGTTGGAACTCCTGAAAACCCCAGGCCCTTTTCATCTCTAAAAGGGCGGTCGCACTGGTTTGTCTGATCAGGATCTAG
TTATGTTGGTGGTGTCCACCATGTGTTTGTGGAAATGCCTGGGAGAAACTTGCAGTGTGTTAGTAGTCTGTGTTATTATC
CTGGATACTCTTGAATGCTACCTGTTATGTTATGCTGGTACTGTCTGTAGATCTTCCTGTGATGATCTGTTAGTGTTGAT
GCTTGCTTTACTGTTATCTGGTTCCTTATGATTAGGAGTATAGAGTTCATGTGATAGTGAATCTTATGT-TTGCAAGAGG
GCATGGAGCATTTGTTATGAATGAGCTATGCACTGTCCAGAGTAAAATGCACCTCCTTTGCACGTTTGGTACATCATCAG
CGGTATCATGTTAGTCTGAAGTCACATTTTTCGCTGCGCTGTTGAATGTCCATTACAGTCGTGTGATGTCCACATCTGTT
AACATCGTCAACACTGGTTGTGACACTGCTAATTTACTGTGTGAGGAAATGCCTAGGAGGAACTTGCC----------CT
GTGTTATCATGGGTACTCTTGAATGCTTAGGTTTTTATGTGATGCTGGTACAGTTGATAGAACTTG---CTGTAATGATC
TGCCAGGGATGTTGGTAGAACTTCCTGTGATGTCTGGTTCCTCACCTTTAGGATTATAGAGTGATGATTCGTTGTGG---
-------------------------------------------------ATGCACTTCCTTTTGCATGTTTGGTACATCA
ACCAACCTTGGATGGTTAGCATGAAGCAGTCAGTGTTTCTTGTGCGCTGTTGAATGTCCAGTACTGTCTTAAGATTTCCT
AGGCTATATTGCTGTCACGGAGAGTAAAAACAACTGTTCAGGCCCCGTTTGATAGCAAAGTATTTTCTAAACATTTTGAG
AATACTGCAGTTTTTGATATTACCATAGTTTTATTTACAATGAGCTGTTCGATTGCCGCTTAAAACTGTTGTTTTAATA-
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>chr4D_64
---------------------------------------------------------------AATTCTCTGCTCCCGCT
GCGACGAGAGAGAGATGGAGG--CCCAACGGTTAGATTTCCGCGCGATTTCGAAATTCGAAACCAACG-CGAAACCCAGC
CCACGCCGCCGACGAATCCGGTGCG---CGATGAGGTGGTGGATCACGATGGAT----CGGCAGCAACGACTACCTGCCC
TACCCCGCGCCCCGCCATCCGGGCCGTCCATCCCCGCACCGACGGCCCCGCCCGCCCCGCTCCGTTTTAAATAGACAG--
ACACACGCTCCCCCACCCCCACCCCACCCCAACTCGTCCCCTCCCCCTCCCCCC---TCGCCGCCGCCCGTCTCCGACGC
TCCATCAGCGCCGACAGCCGCCCCCCTCTCAGCTCCAAGGTTGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCTCGCCCCCCTCCCCCGCGAAATCCGCCCATCCCTCCG
CTGG----------------------------------------------------------------------------
-----------ATCAGCCATCCGTTGATTGATCTGGTGGTCTGT----TCGGATTTCTCTGAAATGGTTTGGGGATTTGT
TCTTGGTGCAGGGCCTCGATCGAGAAGCGGCGGCGGTGGACATGGGCCAGATCCAGTACTCCGAGAAGTACTTCGACGAC
ACCTTCGAGTACAGGTTCGTGCCCAAACCCTAGCCCCTCCCGATCTCATCCCCTCG--------------GTGCGCCGCG
GATGGCGAAACCCTAAGTAACCAACTAACACGGCCGATGTCGCCGCGCGCAGGCACGTGGTCCTCCCGCCGGAAGTCGCC
AAGCTCCTCCCCAAGAACCGCCTCCTCGCCGAGGTAACCGTCCAGATTTCCGTCCGCATTCCCGTAAGATCGCGTTTTCT
CGCCGGATCGGCTCTCTGATGTTGCGAAATTGGGGTTTTTTTC-CCCTTGCAGAACGAGTGGCGCGCGCTGGGCGTGCAG
CAGAGCCGCGGGTGGGTGCACTACGCCGTCCACCGGCCGGAGCCGCACATCATGCTGTTCCGCCGCCCGCTCAACTACCA
GCAGCAGCAGGACGCGGCTGCTGCCGCCGCGGCGCAGATGATGCCCAAGTGATCGGCCCCAGCGAGGGCAGTGGCGACCG
GGGGTTGGAACTCCTGAAAACCCCAGGCCCTTTTGATCTCTAAAAGGGCGATCGCACTGGTTTGTCTGGTCAGGATCTAG
TTGTGTTGGTGGTGTCCACCATGTGTTCGTGGAAATGCCTGGGAGGAACTTGCAGTGTGTTAGT---CTGTGTTATTATC
CTGGATACTGTTGAATGCTACCTGTTATGTGATGCTGGTACTGTTGGTAGATCTCCCCGTGATGATCTGTTAGTGTTAAT
GCTTGCTTTACTGTTATCTGGTTCCTTA-GATTAGGTGTATGGTGTTCATGTGATAGTGAATCTTATGTTTAGCAAGAGG
ATTTGGAGCACTGGTTATGGATGATCTATGCACCGTCCAGACTAAAATGCACCTCCTTTGCATGTTTGGTACATCATCAA
CTGTATCATGTTAGTCTGAAGTGACAATTTTCGCTGCGCTGTTGAATGTCCATTACAGTCGAATGATGTCCACATTTGTT
AACATCATCAACATTGATTGTGACACTGGTAATTCGCAGTGGGAGGAAATGCCTGGGAGGAACTTGCCTTGTCTTGGTCT
TTGTTATCATTGGCACTCTTGAATGCTAAGTTGC-TATGCGATGCTGTTATAATAACTGGTAGAACTTCCTGTAATTATC
TGCTAGTGATGTTGGTAGAACTTCCTGTAATGTCTTGTTCCTCACCTTTAGGATTATAGAGTGATG--------------
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>chr4B_79
------------------------------------------------------------------------------CT
GGGACGAGAGAGAGAGATGGAGACCCAACGGTTAGATTTCCGCGCGATTTCGAAATTCGAACCC-ACG-CGAAACCCAGC
CCACGCCGCCGACGAATCCGGTGCG---CGACGGGGTGGGGTGGAC----GGAT----CGGCAGCAACGACTACCTGCCC
TACCCCGCGCCCCGCCATCCGGGCCGTCCATCCCCGCACCGACGGCCCCGCCCGCCCCGCTCCGTTTTAAATAGACACAC
GCACACACTCCCCCACCCCCACCCCACCCCACCTCGCCCCCTTCCCCTCCCCCT---TCGCCGCCGCCCGTCTCCGACGC
TCCATCAGCGCCGACAGCCGCCCCC-TCTCCGCTCCGAGGTCG-------------------------------------
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--------------------------------------GTCGCTCGCCCCCCTTCCCCGCGAATCCCCCG-ATCCCTCCG
CTGG----------------------------------------------------------------------------
-----------ATCAGCCGTCTGTTGATTGATCTGGTGGTCCGT----TCGGATTTTTCTGAAATGGTTTGGGGATTTGT
TCTTGTTGCAGAGCCTCGATCGAGAAGCGGCGCCGGCGGACATGGGCCAGATCCAGTACTCCGAGAAGTACTTCGACGAC
ACCTTCGAGTACAGGTTCGTACCCAAACCCTAGCCCCTCCCGATCTCAT-CCCCCGATCTTATCCCCTCAGTGCGCTGCG
GATGGCGAAACC--------CTAACTAACACGGCCGATGTCGCCGCGCGCAGGCACGTGGTCCTCCCGCCGGAAGTCGCC
AAGCTGCTCCCCAAGAACCGCCTCCTCGCCGAGGTAACCCTCCAGATTTCCGTCCGCATTCCCGTAAGATCGCGTTTTCT
CGCCGGATCGGCTCTCTGATGTTGCGAAATTGGGGTTTTTTTTTCCCTTGCAGAACGAGTGGCGCGCGCTGGGCGTGCAG
CAGAGCCGCGGGTGGGTGCACTACGCCGTCCACCGGCCGGAGCCGCACATCATGCTGTTCCGCCGCCCACTCAACTACCA
GCAGCAGCAGGACGCGGCGGCCGCCGCCGCGGCGCAGATGATGCCCAAGTGATCGGCCCCGGCGAGGGCAGTGGCGACCG
GGG-TTGGAACTCCTGAAAACCCCAGGCCCTTTTCATCTCTAAAAGGGCGGTCGCACTGGTTTGTCTGATCAGGATCTAG
TTGTGTTGGTGGTGTCCACCATGTGTTCGTGGAAATGCCTGGGAGGAACTTGCAGTGTGTTAGT---CTGTGTTATTATC
CTGGATAATCTTGAATGCTACCTGTTATGTTATGCTGGTACTGTCTGTAGATCTACCTGTGATGATCTGTTGGTGTTAAT
GCTTGCTTTACTGTTATCTGGTTCCTTATGATTAGGGGTATAGTGTTCATGTGATGGTGAATCTTATGT-TAGCAAGAGG
ACATGGAGCATTTGTTATGGATGAGCTATGCACTGTCCAGACTAAAATGCACCTCCTTG---CGTTTGGTACATCATCAA
CCGTATCATGTTAGTCTGAAGTCACATTTTTCGGTGCGCTGTTGAATGTCCATTACAGTCGAATGATGTCCACATTTGTT
AACATCATCAACACTGGTTGTGACACTGGTAATTCGCAGTGGGAGGAAATGCCTGGGAGGAACTTGCCTTGTCTTCGTCT
TTGTTATCATTGGCACTCTTGAATGCTAAGTTGC-TATGCGATGCTGTTATAATGACTGGTAGAACTTCCTGTAATTATC
TGCTAGTGATGTTGGTAGAACTTCCTGCAATGTCTTGTTCCTCACCTTTAGGATTATATAGTGATGGTGAATCTTATGCT
AGCAAGAGCAAATGGAACTCTGGACTGTCAAAGATTATCACAGGCAAAAATGCACTTCTTTTTGCATATTATATAT----
-----CCTTGGCCAGTTAGCATGAAGGAGTCACTGTTTTTTGTGTGCTGTTGAATGTCCAGTACCATTGTAAAATTTCCA
AAGCTATATTGCTGTCACAGGAAGTAAAAACAACTGGAGTTCTGCAGAGTTTTAAGGACAGGTTGTGCAAGTGTTCACCA
TGCTGCTTTGTGTAGCATCCTTTTTGTTTTGAATAATATAATATATGCTAGAATGGAGTTGCTGCAGAAGATTGGTTATA
TGTCGCGTGTTTCTTAGCGTGTGCTTAGGTAAAATTTTCTGCTTTCTATGGGTGCAATAGGATCATTTTTCTGGCGATAT
AAACTTTTTTTAGGATAAATGTTGCCGCTTTATTAATTAAACGTAAACAGAAATCTTGTCTGAAATAATGTCCAGAATGC
AATCTGGAGGAACAGAGAGCCAGACTTTACAAAGTTCTTCCCCCATTCCAACCTTGAGCATTTCCTTAATCTCCTCCACA
TGCGGCCCTACAGCTGAGAGATTCTTCTCCGAGTTGTTAGTCATAGCCACCACACTTGAGTTATCACTCTCCAGATGTAG
CCTTTGCACATTTACCTCTGCTGCAATGCAAGCTGGATGGCTCTCTTGCAAGCATGTAATTCCACCCCTGCCGACCTGCT
GTAGTGGTGACACGCTGCTGCCTTGAAAGCACCCATATGAACTTGGAGTGTGTTGGCCTGTGTTATCATGGGTACTCTTG
AATGCTAAGTTGTTATGTGATGCTGGTACAGTTTGTAGAACTTCCTGTGATGATC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----S---------
------------S-----------------------------------------------------SSS-----------
-------------------------SSS--------------------------SSSS-----------------SSS--
SSS-------------------------------------------------------------------------S---
-----------------------------------------------S-S----SSS-----------------------
------S---------------SSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
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--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS--SS-S--S---S----S---SS-SS---SSS-SSSS--------------------------------
------S-------------------------------------------------------------------------
-----------------S----------------------------S---------------------------------
---S------------S------------------------S----------------S---------------------
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S-----S--S-S--------S----------SS--S--------------------------------------------
--------S-----------------------------------------------------------------------
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--S------------------------S-----------------S------------------SSS-------------
------------------------------------------------------S----------------------S--
------------------------------------S------S---------------------------S--------
S------------------S---------------------S-------------------------------------S
-S-----------------------------------------------------------SS------------S----
------S---------------------S-----SS-S---S------------S-------------------------
S---------S--S-------------S--S-SSS----S-------S--S-S-SSS-S-S-SSSS----------S---
---S--S---------------------S------S------------------------------S-SSS-SS-SS---
----------------------------------------------------------S--------S--SSS--SSSSS
SSSSS------SSS------------S-----S-----S-----S-------------------SS-SS---S------S
-S----------------S-SS--------------SSSSSSSS-S-SS-SS--SSS-SSSS--S-SS--SSS--SSSSS
SSSSSSSSS--S-SSS--SS-SSSSSSS--SS--SSSSS-SS-SS--S-S--S--SS-S-SSSSSSSSSSS--SSSSSS-
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>forward_36
----------------TGCCGTATGTCCAGTCCAAG--------------------------------------------
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>reverse_1628
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---------------------------TGTGGAAATGCCTGGGAGAA---------------------------------
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