>input_sequence_78982
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-------------------------------------------------ATGGCCATGAGCTCATCTCCTCTTCGGGCGT
TCCTGGCGGCCATGCTTCTCAGCTTCTTCCTCGGAGCTGCGACGACATTCAGCCGCACCACGCCGCCGATGCTCTCCGCT
TTTCAGGTACGTATGTCCTCGGAGCATAGATGACAGAGCATCACTCTCTCTCC-------------TTGCAACTCCATTA
ATTTACGTGGCTCC------AGCTAACTAAACCGCACTGACGCTGGTGTTCATGGGCAGAACTTGGCGGAGGACAAGTCG
CGGCTGGGGTCGACGCCGCCGAGCTGCCACAACCGGTGCAACACTTGCAACCCCTGCAAGCCGGTGCAGGTGACCACGAC
GCTCCCGGTGGGGTCTGGCGGCCCGTCCACGGCGTCCCGCGGCTCCTCCGCCGCCGT---CGACGAGGCCGCGGCCAACG
TGCAGTACTCCAACTACAAGCCGCTGGGGTGGAAGTGCCGCTGCGCCGGCCGCCTCTACAACCCCTAG------------
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--
>chr6D_1_TraesCS6D01G296500
GGAATGCTGCAATGCGTGCCTTTGGATGGCCCACGGGAGAAAAACACAGAAATTTTAGAGGATAGAGGAGAGGGA--GTA
GAGAGAGATAGAGTGTATTGGACTTTTCAAAGAAAAACAAAATAAGATTTGAGCTCATGTTCATATTCCTATGGAATAGA
CAGCATATAAATTTGGTGACGCCAATCCTATGATTTACAGTAAATGGTTCTCTTAAGAAAATACCGTTAAATTCCTTCAA
TCTAGGGAGGGTGACACTAAGGGCCTGTTTGGTTTCAATAAGTCACCCGACTTATAAATCAGGTGACTTAAAACCAGTGA
CTTATAAGTCACGCCTGTTTAGTTGTCATCTGACTTATAAGTCACCTGACCACACCTTCACACCTTGTTTTTTTATGTAA
AGGTAGTGGGACCCACGCAAAAGGGGTGACTTGCAAGTTTTAAGTTGAGGTGGAGCAACTTATGACTTATAAATTGGGGT
GACTTATTTGAAACCAAACTGGCCCTAAGAAGCCGTGGGTTTGCAACGAGTGGAGTGGTA-GTACGTGTACAA-GTCACA
TGTGGCAGCGAGGGGTGGTCACCATCTCTGTCTCTTGCGA---CCTCCATGGCTCCATTCTGCAGCGGCATCTCAGTCTC
CCT-CCCATACATATACGCCCGTCTCGTCTCTTTCCTAGCTCTCATCCCATTTGCAACTTCGCTCCTCATAGGCCACTGA
CCACTTTCTTCTACCCTCTGATGTCCGATCCAGCGGCACCATCACTGCCCGCCCATCTGCACTAGCCGGCCACCTTGAGC
TCCAATAGAGTGGCTAGGTTTCTCCTA-GCTGTATCCCTAGCTCTGGCCAGTCTGATCAAGGAACCTACACACAAGGCAA
GCTGCAAGCTAGCTTCCTCTTCCACCTCTGCCTCTGCCTCACCCCAGGCTAGAAGCTTCTCTTCTCTTTAGCCTCACCTC
TCACGGTCACCGGCACATAATCTGTGGCTGTAACGACCGAGATGGTCGGATGGCCATGAGCTCATCTCCTCTTCGGGCGT
TCCTGGCGGCCATGCTTCTCAGCTTCTTCCTCGGAGCTGCGACGACATTCAGCCGCACCACGCCGCCGATGCTCTCCGCT
TTTCAGGTACGTATGTCCTCGGAGCATAGATGACAGAGCATCACTCTCTCTCC-------------TTGCAACTCCATTA
ATTTACGTGGCTCC------AGCTAACTAAACCGCACTGACGCTGGTGTTCATGGGCAGAACTTGGCGGAGGACAAGTCG
CGGCTGGGGTCGACGCCGCCGAGCTGCCACAACCGGTGCAACACTTGCAACCCCTGCAAGCCGGTGCAGGTGACCACGAC
GCTCCCGGTGGGGTCTGGCGGCCCGTCCACGGCGTCCCGCGGCTCCTCCGCCGCCGT---CGACGAGGCCGCGGCCAACG
TGCAGTACTCCAACTACAAGCCGCTGGGGTGGAAGTGCCGCTGCGCCGGCCGCCTCTACAACCCCTAGATCGTCGACTAG
ATAAGCCGCTGATTACCACAACACTCCTCGACGGCGGCACGTACCATAGAGGCTC------------CGGCCGGTCGAGA
CTCGAGAGCTACGCTACGATCCCGGTCTAGTTTTGGTTATTTCATTTGGTCCCATAAATTCCTTGGCATCTCGTGTACCG
TCCTCGTCCTGCACTGCAGGCTTGCATTGTCTTGTGTTCTTTCTTGCTACGCTGATTCCAGCATTTTACGGTGTACTACG
CACATAG---------TAAGAGTGATTGGGATCGATGGAGCGAGCGGTAAATTATGTATTGTAGCGTAGATGTAATAATA
GTAATAACAGTACCAGTGCTGTGGTGATGGCGGGTTAAAAGCCAGGCAAGCATGCATGGCTGCACGTGACTCTCCTCTGA
CGTGAATCTGAAATCCCGAGTGGATCCGGTCCAAGCTGCTGCGCGCGGCCCAGCAATTAGCGCCACTGACCGGGGTCTCC
GACACGTTTTCCAGGAGCGGCTGAGCGGTGGCCCCCGGCCCCGTCGTCGAAGTAATTGCGCTTGTGTGCG------TACG
TGAAAACTCTCGGTCATGAGACGTGGGTCCGAGGCGAATGGAGGCTAGCGCGATTTTTTAGCCTGATCATCATTATCTCC
GGCACGGCTCTGGTGGATCGCCATGTGTTAATTTATAGTGGTGTCTCCCTCGCCCTGGGGCTGGGCTGGGTTCGTA----
---TGGGTGTGGTGGGGTGTGTGGGGTTCGCCGCGCTTGGAAGTACCCGCTCGGACGTGGCTCTTGTCGCCTGTCGGGCC
TCCCTCT------------CGCTCTGTAGCGGCGTCCGGGCTTGGGCGGATGCGCGGTGTGGGCACGCCGCGCACGTACG
GACACACCAGTAGCGGCTATAGCGACGATGCAGGTGTTGCTGACAGTATTATTTTTTCAAAT----TGAAGTGAGGCAGG
A----GTAGTTTTCGTCTGCAAATAAGTGTGTGTTAAGACACGAGACAGTGTTTTGCGGGGTGCTGCTCAACGTTCTGAG
TT
>chr6A_1
GGAATTCTGCAATGCGTGCCTTTGGATGGCCCACGAGAAAAAAACACAGAAATTTTAGAGTGTTGAGGGGAGAGA--GTA
GAGAGAGATAGAGTGTATTGGACTTCTCCAAGAAAAATAAAATGAGATTTGAGCTCATGTTCATATTCGTATGGAATAGG
CAGCATGTAAATTTGGTGGCAGCAATCCTATGATTTA-----AATGGCTTTCTAAAGTAAATACTGTGAAATTCCTTCAA
TCTAGGGAGGGTGACACTAG------------------------------------------------------------
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-----------------------------GAGCCGTGGGTTAGCACCGAGTGGAGTGGTACGTACGTGTACAATGTCACA
TGTGGCAGCGAGGGGTGGTCACCATCTCTGTCTCTTGCGA---CCTCCATGGCTCCATTCTGCAGCGGCATCTCAGCCTC
CCTA-CCATACATATACGCCCGTCTCGTCTCTTTCCTAGCTCTCATCCCATTTGCAACTTCGCTCCTCATAGGCCACTGA
CCACCTTCTTTTACCCTCTGATGTCCGATCCAGCGGCACCATCACTGCCCGCCCATCTGCACTAGCCGGCCACCTTGAGC
TCCAACAGAGTAGCTAGGTTTCTCCTA-GCTGTATCCCTAGCTCTGGCCAGTCTGATCGAAGAACCTACACACAAGGCAA
GCTGCAAGCTAGCTTCCTCTTCCACCTCTGCCTCTGCCTCACCCCAGGCTAGAAGCTTCTCTTCTCTTTAGCCTCAC-TC
TCACCGTCACCGGCACATACTCTGCGGCTGTAACGACCGAGATGGTCGGATGGCCATGAGCTCATCTCCTCTTCGGGCGT
TCCTGGCGGCCATGCTCCTCAGCTTCCTCCTCGGAGCTGTGACGACATTCAGCCGCACCACGCCGCCGATGCTCTCCGCT
TTTCAGGTACGTGTATCCTCAGAGCATAGATGATAGAGCATCACACACTCTCCCTCTCCCTCGCACTTGTAGCTCCATTA
ATTTATGTGGCTCGAACTCGAACTAACTAAATGGCACTGACGCTGATGTTCATGGGTAGAACCTGGCGGAGGACAAGTCG
CGGCTCGGGTCGACGCCGCCGAGCTGCCACAACCGGTGCAACACGTGCAACCCCTGCAAGCCGGTGCAGGTGACCACGAC
GCTCCCGGCGGGGTCTGGCGGCCCGTCCACGGCGTCCCGCGGCTCCTCCGCCGCCGCCGCCGACGAGGCCGCGGCCAACG
TGCAGTACTCCAACTACAAGCCGCTGGGGTGGAAGTGCCGCTGCGCCGGCCGCCTCTACAACCCCTAGATCGTCGCCTAG
ATAAGCCGCTGATTACCACAACACTCCTCGACGGCGGCATGTACCCTAGAGGCTCCGGCCGGGCGGGCGGCCGGTCGAGA
CTCGAGAGCTACGG-----TCCCGGTCTAGTTTTGGTTAGTTCATTTGGTCCCATAAATTCCTTGGCATCTCGTGTACCG
TCCTGGTCCTGCACCGCAGGCTTGCATTGTCTTGTGTTCA-TCTTGCTACGCTGGTTCCAACATTTTACGGCGTACGCAT
------G---------TAAGAGTGATTGGGATCGAT-GAGCGAGCGGTAAATTATGTATTGTAGCGTAGATGTAA---CA
GTAATAACAGTACTGGTGCTGTGGTGATGGCGGGTTAAAAGCCAGGCAAGCCTGCATGGCTGCACGTGACTCTCCTCTGA
CGTGAATCTGAAATCCCGAGTGGATCCGGTCCAAGCTGCTGCGCTTGCCCCAGCAATTAGCGCCACTGACCGGGGTCTCC
GACACGTTTTCCAGGAGCGGCTGAGCGGTGGCCCCCGACCCCGTCACCGAAGTAATTGCGCTTGTGTGTGTACTCCTACG
TGAAAACTCTCGGTCATGAGACGTGGGTCCGAGGCGAATGGAGGCTAGCGCGGTTTTTTAGCCTGATCATCATTATCCAC
GGCACGGCTCTGGTGGATCGCCATGTGTTAATTTATGGTGGTGTCTCCCTCGCCCTGGGGCTCGGCTCGTATCGTA----
---T------------GGGTGTGGGGTTCGCCGCGCTTGGAAGTACCCGCTCGGACGTGGCTCTTGTCGCTTGTCGGGCC
TCCCTCCCTCCCTCCCTCCCGCTCTGTAGCGGCGTCCGGGGTTGGGCAGATGCGCAGTGTGGGCACACGGCGCGCGTACG
GACACGCCAGTAGCGAC--TAGCGACGATGCAGGTGTTGCTGACAGTAATAGTTTTTTCAAATTGATGAAGTGAGGCAGG
GGTAGGTAGTTTTCGTCTGCAAATAGGGGTGTGTCAAGACCCGAGA----------------------------------
--
>chr6B_1
GGAATTCTGCAATGGGTGCCTTTGGATGGCCCACGAGAAAAAAACACAAAAAATTTAGAGGATTGAGGAGAGAGAGAGTA
GAGAGAGGTAGAGTGTATTGGACTTCTCAAAGAAAAACAAAATGAGATTTGAGTTCATGTTCATATTCCTATGGAAAAGA
CAGCATATAAATTTGGTGACGCCAATCCTATGATTTACAGTAAATGGTTTTCTAAAGAAAATACCGTTAAATTCCTTCAA
TCTAGGGAGGGTGACACTAC------------------------------------------------------------
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-----------------------------AAACCGTGGGTTTGCACCGAGTGGAGTGGTACGTACGTGTACAATGTTACA
TGTGGCAGCGAGGGGTGGTCACCATCTCTGTCTCTTGCGACCTCCTCCATGGCTCCATTCTGCAGCGGCATCTCAGTCTC
CCTTCCCATACATATACGCCCGTCTCGTCTCTTTCCTAGCTCTCATCCCATTTGCAACTTCGCTCCTCATAGGCCACTGA
CCACCTTCTTTTACCCTCTGATGTCTGATCCAGCGGCACCATCACTGCCCGGCCATCTGCACTAGCCTTAGCAGTTTAGC
TCCAAGAAAGTAGCTAGGTTTCCCCTAGGCTGTATCCGTAGCTCTGGCCACTCTGATCGAAGAACCTACACACAAGGCAA
GCTGCAAGCTAGCTTCCTCTTCCACCTCTGCCTCTGCCTCACCCCAGGCTCGAAGCTTCTCTTCTCTTTAGCCTCAC-TC
TCACCGTCGCCGGCACATAATCTGTGGCTGTAACGACCGAGATGGTCGGATGGCCATGAGCTCATCTCCTCTTCGGGCGT
TCCTGGCGGCCATGCTTCTCAGCTTCCTCCTCGGAGCTGCGACGACGTTCAGCCGCCCCCCGCCGCCGATGCTCTCCGCT
TTTCAGGTACG----------------------CACAGCGTCACCGTCTCCG------------ACTTGTAGCTCCATTA
ATTTACGTGGCTCT------AACTAACTAAACCGCACTGACGGTGATGTTCATGCGCAGAACTTGGCGGAGGACAAGTCG
CGGCTGGGGTCGACGCCGCCGAGCTGCCACAACCGGTGCAACGCGTGCAACCCCTGCAAGCCGGTGCAGGTGACCACGAC
GCTCCCGATGGGGTCTGGCGGCCCATCCACGGCGTCCCGCGGCTCCTCTGCCGCCGT---CGACGAGGCCGCGGCCAACG
TGCAGTACTCCAACTACAAGCCGCTGGGGTGGAAGTGCCGCTGCGCCGGCCGCCTCTACAACCCCTAGATCGTCGACTAG
ATAAGCCGCTGATTACCACAACACTCCTCGACGGCGGCACGTACCCTAGAGGCTCCGGCCGGGCGGGCGGCCGGTCGAGA
CTCGAGAGCTACGG-----TCCCGGTCTTGTTTTGGTTAGTTCATTTGGTCCCATAAATTCCTTGGCATCTCGTGTACCG
TCCTGGTCCTGCACCGCAGGCTTGCATTGTCTTGTGTTCTTTCTTGCTACGCTGGTTCCAACATTTTACGGTGTACGCAT
------GTACTACTACTAAGAGTGATCGTGATCGATGGAGCGAGCGGTAAATTGTGTATTGTAGC---GATGTAA---TA
GTAATAACAGTACTGGTGCTGTGGTGATGGCGGGTTAAAAGCCAGGCAAGCCTGCATGGCTGCACGTGACTCTCCTCTGA
CTTGAATCTGAAATCCCGAGTGGATCCAGTCCAAGCAGCTGCGCTTGCCCCAGCAATTAGCGCCACTGACCGGGGTCTCC
GACACGTTTTCCAGGAGCGGCTGAGCGGTGGCCCCCGGCCCCGTCATCGAAGTAATTGCGCTTGTGTGCG------TACG
TGAAAACTCTCGGTGTA-AGACGTGGGTCCGAGGCGAATGGAGGCTAGCGCGATTTTTTAGCCTGATCATCATTATCCTC
GGCACGGCTCTGGTGGATCGCCATGTGTTAATTTATGGTGGTGTCTCCCTCGCCCTGGGGCTCGGCTCGTATGGGTGTAG
TGGT------------GTGTGTGGGGTTCGCCGCGCTTGGAACTAGCCGCTCGGACGTGGCTCTTGTCGCTTGTCGGGCC
TCA--------CTCCCTCGCTCTCTGTAGCGGCGTCCGGGCTTG-GCAGATGCGCAGTGTGGGCACACCGCGCACGTACG
GACACACCAGTAGCGAC--TAGCGACGATGCAGGAGTAGA------------TTTTTCAAAT----TGAAGTGAGGCAGG
G----GTAGTTTTCGTCTGCAAACAAGTGTGTGTCAAGACTCAAGGCAGTG-TTTGCGGGGTGCTGCTTGACGTTCTGAG
TT
>SNPs
-----S-----------------------------S--S------------------------S--------S-------
-------------------------S-----------------S------------------------------------
-------------------------------------------------S---S--------------------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S----------------------------------
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----S-----S---------------------------------------------------------------------
-----S-----S----------------------------------------------S-S-------------------
-----------------------------------------------------------------------------S--
----S---------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
------------S-S-----S-----------------------S------------------------S-S--------
-------------S-------S-----------------------S----------------------------------
--------------------------------------------S-----------------------------------
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---------------------------------------------S----------------------------------
-------------SSSSSS--------------------S----------------------------------------
----S---------S---------------------------------------S-----S---------------SSSS
SSSSSS---------------------------------------------------------------------SSS--
-------------SS------------------------------------S----------------------------
--------------------------------------------SS-S--------------------------------
---------------------------------------------S----------------------------------
-----------------------------------------------------------------------------SS-
------------------------------------S-------------------------S----S-SS---------
----SSSSSSSSSSSS------------------------------------------------------S---------
------S----------------------------------------S-------S----------S-------------
---------------S-SS-----------------------------S--S----------------------------
S---------------------------------S-----S----------S----------------SS----------
--
>forward_382
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------------------------------------------CACCTGACCACACCTTCACA------------------
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--
>reverse_2416
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---------------GCTATAGCGACGATGCAGGT---------------------------------------------
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--
